RNA–Protein interactions for RNA: ENST00000565958.1

CCNDBP1-207, Transcript of cyclin D1 binding protein 1, humanhuman

TSL 2

Gene CCNDBP1, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNDBP1-207ENST00000565958 AEBP2Q6ZN18 517 aaPredicted RBP27.25■■□□□ 1.95
CCNDBP1-207ENST00000565958 CHIC1Q5VXU3 224 aa25.55■■□□□ 1.68
CCNDBP1-207ENST00000565958 SENP3Q9H4L4 574 aaPredicted RBP23.39■■□□□ 1.33
CCNDBP1-207ENST00000565958 PHF23Q9BUL5 403 aaPredicted RBP23■■□□□ 1.27
CCNDBP1-207ENST00000565958 FOXD1Q16676 465 aa21.8■■□□□ 1.08
CCNDBP1-207ENST00000565958 POTEDQ86YR6 584 aa20.77■□□□□ 0.92
CCNDBP1-207ENST00000565958 MSH5O43196 834 aa20.62■□□□□ 0.89
CCNDBP1-207ENST00000565958 PIAS4Q8N2W9 510 aaPredicted RBP20.28■□□□□ 0.84
CCNDBP1-207ENST00000565958 PLPPR3Q6T4P5 718 aa20.24■□□□□ 0.83
CCNDBP1-207ENST00000565958 PPP6R1Q9UPN7 881 aa20.05■□□□□ 0.8
CCNDBP1-207ENST00000565958 ADRA2BP18089 450 aa19.96■□□□□ 0.79
CCNDBP1-207ENST00000565958 MAPK8IP2Q13387 824 aaPredicted RBP18.46■□□□□ 0.55
CCNDBP1-207ENST00000565958 DMRT2Q9Y5R5 561 aa18.46■□□□□ 0.55
CCNDBP1-207ENST00000565958 SCAF1Q9H7N4 1312 aaKnown RBP18.37■□□□□ 0.53
CCNDBP1-207ENST00000565958 CACNB1Q02641 598 aaPredicted RBP17.94■□□□□ 0.46
CCNDBP1-207ENST00000565958 DCAF8L1A6NGE4 600 aa17.72■□□□□ 0.43
CCNDBP1-207ENST00000565958 PPP4R3CPQ6ZMV5 832 aa17.66■□□□□ 0.42
CCNDBP1-207ENST00000565958 HOXD11P31277 338 aaPredicted RBP17.63■□□□□ 0.41
CCNDBP1-207ENST00000565958 RNF39Q9H2S5 420 aa17.53■□□□□ 0.4
CCNDBP1-207ENST00000565958 CNKSR2Q8WXI2 1034 aa17.45■□□□□ 0.38
CCNDBP1-207ENST00000565958 RNF216Q9NWF9 866 aaPredicted RBP17.4■□□□□ 0.38
CCNDBP1-207ENST00000565958 C1QBPQ07021 282 aaKnown RBP17.28■□□□□ 0.36
CCNDBP1-207ENST00000565958 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
CCNDBP1-207ENST00000565958 NCBP3Q53F19 620 aaKnown RBP16.91■□□□□ 0.3
CCNDBP1-207ENST00000565958 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.81■□□□□ 0.28
CCNDBP1-207ENST00000565958 NPM3O75607 178 aaKnown RBP16.6■□□□□ 0.25
CCNDBP1-207ENST00000565958 U3KPZ7 1027 aaPredicted RBP16.37■□□□□ 0.21
CCNDBP1-207ENST00000565958 CAPN15O75808 1086 aa16.27■□□□□ 0.2
CCNDBP1-207ENST00000565958 DSG3P32926 999 aa16.26■□□□□ 0.19
CCNDBP1-207ENST00000565958 SPINK5Q9NQ38 1064 aaPredicted RBP16.25■□□□□ 0.19
CCNDBP1-207ENST00000565958 POTEHQ6S545 545 aa16.21■□□□□ 0.19
CCNDBP1-207ENST00000565958 APLP2Q06481 763 aa15.97■□□□□ 0.15
CCNDBP1-207ENST00000565958 SLC4A2P04920 1241 aa15.95■□□□□ 0.14
CCNDBP1-207ENST00000565958 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
CCNDBP1-207ENST00000565958 ZNF219Q9P2Y4 722 aaPredicted RBP15.9■□□□□ 0.14
CCNDBP1-207ENST00000565958 KCNA4P22459 653 aa15.89■□□□□ 0.13
CCNDBP1-207ENST00000565958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.85■□□□□ 0.13
CCNDBP1-207ENST00000565958 HNRNPUL2Q1KMD3 747 aaKnown RBP15.85■□□□□ 0.13
CCNDBP1-207ENST00000565958 ABCB7O75027 752 aa15.82■□□□□ 0.12
CCNDBP1-207ENST00000565958 SAMD1Q6SPF0 538 aaPredicted RBP15.72■□□□□ 0.11
CCNDBP1-207ENST00000565958 RBM42Q9BTD8 480 aaKnown RBP15.59■□□□□ 0.09
CCNDBP1-207ENST00000565958 MYCNP04198 464 aaPredicted RBP15.39■□□□□ 0.05
CCNDBP1-207ENST00000565958 POLA2Q14181 598 aa15.39■□□□□ 0.05
CCNDBP1-207ENST00000565958 CHRDL2Q6WN34 429 aa15.37■□□□□ 0.05
CCNDBP1-207ENST00000565958 AKT1S1Q96B36 256 aa15.12■□□□□ 0.01
CCNDBP1-207ENST00000565958 ZBTB12Q9Y330 459 aaPredicted RBP15.1■□□□□ 0.01
CCNDBP1-207ENST00000565958 SP7Q8TDD2 431 aaPredicted RBP15.01□□□□□ -0.01
CCNDBP1-207ENST00000565958 FOXD4L1Q9NU39 408 aa15□□□□□ -0.01
CCNDBP1-207ENST00000565958 ATF5Q9Y2D1 282 aaPredicted RBP15□□□□□ -0.01
CCNDBP1-207ENST00000565958 REM2Q8IYK8 340 aaPredicted RBP14.96□□□□□ -0.01
CCNDBP1-207ENST00000565958 SLC4A1APQ9BWU0 796 aaKnown RBP14.96□□□□□ -0.01
CCNDBP1-207ENST00000565958 PIP4P2Q8N4L2 257 aa14.9□□□□□ -0.02
CCNDBP1-207ENST00000565958 OSCARQ8IYS5 282 aa14.89□□□□□ -0.03
CCNDBP1-207ENST00000565958 PITPNM1O00562 1244 aa14.78□□□□□ -0.04
CCNDBP1-207ENST00000565958 HAX1O00165 279 aa14.77□□□□□ -0.05
CCNDBP1-207ENST00000565958 FXR2P51116 673 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCNDBP1-207ENST00000565958 ATXN8OSP0DMR3 200 aa14.62□□□□□ -0.07
CCNDBP1-207ENST00000565958 ZBTB22O15209 634 aa14.58□□□□□ -0.08
CCNDBP1-207ENST00000565958 SPDYE2BA6NHP3 402 aa14.57□□□□□ -0.08
CCNDBP1-207ENST00000565958 SPDYE6P0CI01 402 aa14.57□□□□□ -0.08
CCNDBP1-207ENST00000565958 SPDYE2Q495Y8 402 aa14.57□□□□□ -0.08
CCNDBP1-207ENST00000565958 FBLN2P98095 1184 aa14.54□□□□□ -0.08
CCNDBP1-207ENST00000565958 EVX2Q03828 476 aa14.49□□□□□ -0.09
CCNDBP1-207ENST00000565958 SPDYE1Q8NFV5 336 aaPredicted RBP14.43□□□□□ -0.1
CCNDBP1-207ENST00000565958 PRKAR2AP13861 404 aaKnown RBP14.41□□□□□ -0.1
CCNDBP1-207ENST00000565958 CLEC11AQ9Y240 323 aa14.4□□□□□ -0.1
CCNDBP1-207ENST00000565958 ZNF692Q9BU19 519 aaPredicted RBP14.33□□□□□ -0.12
CCNDBP1-207ENST00000565958 SSUH2Q9Y2M2 353 aa14.31□□□□□ -0.12
CCNDBP1-207ENST00000565958 C19orf67A6NJJ6 358 aa14.3□□□□□ -0.12
CCNDBP1-207ENST00000565958 MKRN4PQ13434 485 aaPredicted RBP14.3□□□□□ -0.12
CCNDBP1-207ENST00000565958 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
CCNDBP1-207ENST00000565958 GABBR2O75899 941 aa14.19□□□□□ -0.14
CCNDBP1-207ENST00000565958 CHADLQ6NUI6 762 aa14.13□□□□□ -0.15
CCNDBP1-207ENST00000565958 PRR29P0C7W0 189 aa14.12□□□□□ -0.15
CCNDBP1-207ENST00000565958 LHX8Q68G74 356 aa14.08□□□□□ -0.16
CCNDBP1-207ENST00000565958 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
CCNDBP1-207ENST00000565958 CD44P16070 742 aaKnown RBP13.93□□□□□ -0.18
CCNDBP1-207ENST00000565958 FARP1Q9Y4F1 1045 aaPredicted RBP13.92□□□□□ -0.18
CCNDBP1-207ENST00000565958 CLCN6P51797 869 aa13.91□□□□□ -0.18
CCNDBP1-207ENST00000565958 POTEIP0CG38 1075 aa13.86□□□□□ -0.19
CCNDBP1-207ENST00000565958 CSRNP3Q8WYN3 585 aa13.78□□□□□ -0.2
CCNDBP1-207ENST00000565958 DCBLD2Q96PD2 775 aa13.75□□□□□ -0.21
CCNDBP1-207ENST00000565958 ZNF579Q8NAF0 562 aaKnown RBP13.7□□□□□ -0.22
CCNDBP1-207ENST00000565958 ZRANB1Q9UGI0 708 aa13.68□□□□□ -0.22
CCNDBP1-207ENST00000565958 STAG3Q9UJ98 1225 aa13.67□□□□□ -0.22
CCNDBP1-207ENST00000565958 CREBZFQ9NS37 354 aa13.63□□□□□ -0.23
CCNDBP1-207ENST00000565958 GALR2O43603 387 aaPredicted RBP13.54□□□□□ -0.24
CCNDBP1-207ENST00000565958 PAK3O75914 559 aaPredicted RBP13.52□□□□□ -0.25
CCNDBP1-207ENST00000565958 PLSCR2Q9NRY7 297 aa13.5□□□□□ -0.25
CCNDBP1-207ENST00000565958 SPDYE4A6NLX3 237 aa13.46□□□□□ -0.25
CCNDBP1-207ENST00000565958 NPM1P06748 294 aaKnown RBP eCLIP13.43□□□□□ -0.26
CCNDBP1-207ENST00000565958 OTUD5Q96G74 571 aa13.43□□□□□ -0.26
CCNDBP1-207ENST00000565958 PHF12Q96QT6 1004 aa13.42□□□□□ -0.26
CCNDBP1-207ENST00000565958 POTEB2H3BUK9 544 aa13.38□□□□□ -0.27
CCNDBP1-207ENST00000565958 MNX1P50219 401 aaPredicted RBP13.34□□□□□ -0.27
CCNDBP1-207ENST00000565958 PELP1Q8IZL8 1130 aaKnown RBP13.31□□□□□ -0.28
CCNDBP1-207ENST00000565958 POTEMA6NI47 508 aa13.26□□□□□ -0.29
CCNDBP1-207ENST00000565958 ASTLQ6HA08 431 aaPredicted RBP13.25□□□□□ -0.29
CCNDBP1-207ENST00000565958 C7P10643 843 aa13.23□□□□□ -0.29
CCNDBP1-207ENST00000565958 SLC39A7Q92504 469 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms