RNA–Protein interactions for RNA: ENST00000565119.1

CHD9-214, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 824 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-214ENST00000565119 AEBP2Q6ZN18 517 aaPredicted RBP35.44■■■■□ 3.26
CHD9-214ENST00000565119 CHIC1Q5VXU3 224 aa33.17■■■□□ 2.9
CHD9-214ENST00000565119 SENP3Q9H4L4 574 aaPredicted RBP30.21■■■□□ 2.43
CHD9-214ENST00000565119 PHF23Q9BUL5 403 aaPredicted RBP29.8■■■□□ 2.36
CHD9-214ENST00000565119 FOXD1Q16676 465 aa28.27■■■□□ 2.12
CHD9-214ENST00000565119 POTEDQ86YR6 584 aa26.72■■□□□ 1.87
CHD9-214ENST00000565119 MSH5O43196 834 aa26.55■■□□□ 1.84
CHD9-214ENST00000565119 PLPPR3Q6T4P5 718 aa26.27■■□□□ 1.8
CHD9-214ENST00000565119 PIAS4Q8N2W9 510 aaPredicted RBP26.27■■□□□ 1.8
CHD9-214ENST00000565119 PPP6R1Q9UPN7 881 aa26.14■■□□□ 1.78
CHD9-214ENST00000565119 ADRA2BP18089 450 aa26■■□□□ 1.75
CHD9-214ENST00000565119 MAPK8IP2Q13387 824 aaPredicted RBP24.04■■□□□ 1.44
CHD9-214ENST00000565119 DMRT2Q9Y5R5 561 aa23.91■■□□□ 1.42
CHD9-214ENST00000565119 SCAF1Q9H7N4 1312 aaKnown RBP23.69■■□□□ 1.38
CHD9-214ENST00000565119 CACNB1Q02641 598 aaPredicted RBP23.07■■□□□ 1.28
CHD9-214ENST00000565119 PPP4R3CPQ6ZMV5 832 aa23■■□□□ 1.27
CHD9-214ENST00000565119 DCAF8L1A6NGE4 600 aa22.94■■□□□ 1.26
CHD9-214ENST00000565119 HOXD11P31277 338 aaPredicted RBP22.86■■□□□ 1.25
CHD9-214ENST00000565119 RNF39Q9H2S5 420 aa22.66■■□□□ 1.22
CHD9-214ENST00000565119 CNKSR2Q8WXI2 1034 aa22.64■■□□□ 1.21
CHD9-214ENST00000565119 RNF216Q9NWF9 866 aaPredicted RBP22.55■■□□□ 1.2
CHD9-214ENST00000565119 C1QBPQ07021 282 aaKnown RBP22.27■■□□□ 1.16
CHD9-214ENST00000565119 DNAJC5BQ9UF47 199 aa22.11■■□□□ 1.13
CHD9-214ENST00000565119 NCBP3Q53F19 620 aaKnown RBP21.92■■□□□ 1.1
CHD9-214ENST00000565119 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.77■■□□□ 1.08
CHD9-214ENST00000565119 NPM3O75607 178 aaKnown RBP21.68■■□□□ 1.06
CHD9-214ENST00000565119 U3KPZ7 1027 aaPredicted RBP21.3■■□□□ 1
CHD9-214ENST00000565119 SPINK5Q9NQ38 1064 aaPredicted RBP21.14■□□□□ 0.97
CHD9-214ENST00000565119 DSG3P32926 999 aa21.08■□□□□ 0.97
CHD9-214ENST00000565119 CAPN15O75808 1086 aa21.07■□□□□ 0.96
CHD9-214ENST00000565119 KCNA4P22459 653 aa20.9■□□□□ 0.94
CHD9-214ENST00000565119 SLC4A2P04920 1241 aa20.85■□□□□ 0.93
CHD9-214ENST00000565119 POTEHQ6S545 545 aa20.84■□□□□ 0.93
CHD9-214ENST00000565119 TRHP20396 242 aaPredicted RBP20.64■□□□□ 0.89
CHD9-214ENST00000565119 ABCB7O75027 752 aa20.58■□□□□ 0.89
CHD9-214ENST00000565119 APLP2Q06481 763 aa20.53■□□□□ 0.88
CHD9-214ENST00000565119 ZNF219Q9P2Y4 722 aaPredicted RBP20.53■□□□□ 0.88
CHD9-214ENST00000565119 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.44■□□□□ 0.86
CHD9-214ENST00000565119 HNRNPUL2Q1KMD3 747 aaKnown RBP20.44■□□□□ 0.86
CHD9-214ENST00000565119 SAMD1Q6SPF0 538 aaPredicted RBP20.33■□□□□ 0.85
CHD9-214ENST00000565119 RBM42Q9BTD8 480 aaKnown RBP20.05■□□□□ 0.8
CHD9-214ENST00000565119 MYCNP04198 464 aaPredicted RBP20.01■□□□□ 0.79
CHD9-214ENST00000565119 POLA2Q14181 598 aa19.99■□□□□ 0.79
CHD9-214ENST00000565119 CHRDL2Q6WN34 429 aa19.84■□□□□ 0.77
CHD9-214ENST00000565119 ATF5Q9Y2D1 282 aaPredicted RBP19.68■□□□□ 0.74
CHD9-214ENST00000565119 SLC4A1APQ9BWU0 796 aaKnown RBP19.6■□□□□ 0.73
CHD9-214ENST00000565119 FOXD4L1Q9NU39 408 aa19.59■□□□□ 0.73
CHD9-214ENST00000565119 AKT1S1Q96B36 256 aa19.53■□□□□ 0.72
CHD9-214ENST00000565119 ZBTB12Q9Y330 459 aaPredicted RBP19.48■□□□□ 0.71
CHD9-214ENST00000565119 REM2Q8IYK8 340 aaPredicted RBP19.38■□□□□ 0.69
CHD9-214ENST00000565119 OSCARQ8IYS5 282 aa19.38■□□□□ 0.69
CHD9-214ENST00000565119 SP7Q8TDD2 431 aaPredicted RBP19.32■□□□□ 0.68
CHD9-214ENST00000565119 PIP4P2Q8N4L2 257 aa19.3■□□□□ 0.68
CHD9-214ENST00000565119 ZBTB22O15209 634 aa19.24■□□□□ 0.67
CHD9-214ENST00000565119 PITPNM1O00562 1244 aa19.19■□□□□ 0.66
CHD9-214ENST00000565119 FXR2P51116 673 aaKnown RBP eCLIP19.1■□□□□ 0.655e-7■■■□□ 15.8
CHD9-214ENST00000565119 HAX1O00165 279 aa19.04■□□□□ 0.64
CHD9-214ENST00000565119 ATXN8OSP0DMR3 200 aa19■□□□□ 0.63
CHD9-214ENST00000565119 SPDYE2BA6NHP3 402 aa18.88■□□□□ 0.61
CHD9-214ENST00000565119 SPDYE6P0CI01 402 aa18.88■□□□□ 0.61
CHD9-214ENST00000565119 SPDYE2Q495Y8 402 aa18.88■□□□□ 0.61
CHD9-214ENST00000565119 EVX2Q03828 476 aa18.85■□□□□ 0.61
CHD9-214ENST00000565119 FBLN2P98095 1184 aa18.83■□□□□ 0.6
CHD9-214ENST00000565119 MKRN4PQ13434 485 aaPredicted RBP18.74■□□□□ 0.59
CHD9-214ENST00000565119 PRKAR2AP13861 404 aaKnown RBP18.67■□□□□ 0.58
CHD9-214ENST00000565119 CLEC11AQ9Y240 323 aa18.66■□□□□ 0.58
CHD9-214ENST00000565119 SPDYE1Q8NFV5 336 aaPredicted RBP18.65■□□□□ 0.58
CHD9-214ENST00000565119 SSUH2Q9Y2M2 353 aa18.61■□□□□ 0.57
CHD9-214ENST00000565119 ZNF692Q9BU19 519 aaPredicted RBP18.6■□□□□ 0.57
CHD9-214ENST00000565119 C19orf67A6NJJ6 358 aa18.51■□□□□ 0.55
CHD9-214ENST00000565119 CHADLQ6NUI6 762 aa18.4■□□□□ 0.54
CHD9-214ENST00000565119 GABBR2O75899 941 aa18.35■□□□□ 0.53
CHD9-214ENST00000565119 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
CHD9-214ENST00000565119 PRR29P0C7W0 189 aa18.28■□□□□ 0.52
CHD9-214ENST00000565119 LHX8Q68G74 356 aa18.12■□□□□ 0.49
CHD9-214ENST00000565119 FARP1Q9Y4F1 1045 aaPredicted RBP18.06■□□□□ 0.48
CHD9-214ENST00000565119 CD44P16070 742 aaKnown RBP18.05■□□□□ 0.48
CHD9-214ENST00000565119 POTEIP0CG38 1075 aa17.99■□□□□ 0.47
CHD9-214ENST00000565119 CSRNP3Q8WYN3 585 aa17.92■□□□□ 0.46
CHD9-214ENST00000565119 CLCN6P51797 869 aa17.81■□□□□ 0.44
CHD9-214ENST00000565119 CREBZFQ9NS37 354 aa17.77■□□□□ 0.44
CHD9-214ENST00000565119 ZNF579Q8NAF0 562 aaKnown RBP17.75■□□□□ 0.43
CHD9-214ENST00000565119 ZRANB1Q9UGI0 708 aa17.73■□□□□ 0.43
CHD9-214ENST00000565119 DCBLD2Q96PD2 775 aa17.72■□□□□ 0.43
CHD9-214ENST00000565119 STAG3Q9UJ98 1225 aa17.67■□□□□ 0.42
CHD9-214ENST00000565119 GALR2O43603 387 aaPredicted RBP17.59■□□□□ 0.41
CHD9-214ENST00000565119 SPDYE4A6NLX3 237 aa17.58■□□□□ 0.4
CHD9-214ENST00000565119 PHF12Q96QT6 1004 aa17.48■□□□□ 0.39
CHD9-214ENST00000565119 EHMT2Q96KQ7 1210 aa17.44■□□□□ 0.38
CHD9-214ENST00000565119 PAK3O75914 559 aaPredicted RBP17.42■□□□□ 0.38
CHD9-214ENST00000565119 MNX1P50219 401 aaPredicted RBP17.42■□□□□ 0.38
CHD9-214ENST00000565119 POTEB2H3BUK9 544 aa17.4■□□□□ 0.38
CHD9-214ENST00000565119 OTUD5Q96G74 571 aa17.39■□□□□ 0.37
CHD9-214ENST00000565119 NPM1P06748 294 aaKnown RBP eCLIP17.35■□□□□ 0.37
CHD9-214ENST00000565119 PELP1Q8IZL8 1130 aaKnown RBP17.32■□□□□ 0.36
CHD9-214ENST00000565119 PLSCR2Q9NRY7 297 aa17.31■□□□□ 0.36
CHD9-214ENST00000565119 MS4A3Q96HJ5 214 aa17.22■□□□□ 0.35
CHD9-214ENST00000565119 ASTLQ6HA08 431 aaPredicted RBP17.17■□□□□ 0.34
CHD9-214ENST00000565119 ATMINO43313 823 aaPredicted RBP17.14■□□□□ 0.33
CHD9-214ENST00000565119 METRNQ9UJH8 293 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms