RNA–Protein interactions for RNA: ENST00000564745.1

CDH1-207, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-207ENST00000564745 AEBP2Q6ZN18 517 aaPredicted RBP21.77■■□□□ 1.08
CDH1-207ENST00000564745 CHIC1Q5VXU3 224 aa21.56■■□□□ 1.04
CDH1-207ENST00000564745 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
CDH1-207ENST00000564745 SENP3Q9H4L4 574 aaPredicted RBP18.58■□□□□ 0.56
CDH1-207ENST00000564745 PLPPR3Q6T4P5 718 aa17.65■□□□□ 0.42
CDH1-207ENST00000564745 FOXD1Q16676 465 aa17.27■□□□□ 0.36
CDH1-207ENST00000564745 POTEDQ86YR6 584 aa17.1■□□□□ 0.33
CDH1-207ENST00000564745 PPP6R1Q9UPN7 881 aa16.74■□□□□ 0.27
CDH1-207ENST00000564745 ADRA2BP18089 450 aa16.73■□□□□ 0.27
CDH1-207ENST00000564745 MSH5O43196 834 aa16.45■□□□□ 0.22
CDH1-207ENST00000564745 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
CDH1-207ENST00000564745 KCNA4P22459 653 aa15.83■□□□□ 0.12
CDH1-207ENST00000564745 PPP4R3CPQ6ZMV5 832 aa15.66■□□□□ 0.1
CDH1-207ENST00000564745 NCBP3Q53F19 620 aaKnown RBP15.27■□□□□ 0.04
CDH1-207ENST00000564745 EHMT2Q96KQ7 1210 aa15.22■□□□□ 0.03
CDH1-207ENST00000564745 NPM3O75607 178 aaKnown RBP15.17■□□□□ 0.02
CDH1-207ENST00000564745 SCAF1Q9H7N4 1312 aaKnown RBP15.12■□□□□ 0.01
CDH1-207ENST00000564745 MAPK8IP2Q13387 824 aaPredicted RBP15.09■□□□□ 0.01
CDH1-207ENST00000564745 SLC4A1APQ9BWU0 796 aaKnown RBP15.09■□□□□ 0.01
CDH1-207ENST00000564745 CNKSR2Q8WXI2 1034 aa15.08■□□□□ 0
CDH1-207ENST00000564745 CSRNP3Q8WYN3 585 aa14.84□□□□□ -0.03
CDH1-207ENST00000564745 DMRT2Q9Y5R5 561 aa14.74□□□□□ -0.05
CDH1-207ENST00000564745 RNF216Q9NWF9 866 aaPredicted RBP14.67□□□□□ -0.06
CDH1-207ENST00000564745 ZBTB22O15209 634 aa14.62□□□□□ -0.07
CDH1-207ENST00000564745 DNAJC5BQ9UF47 199 aa14.54□□□□□ -0.08
CDH1-207ENST00000564745 HOXD11P31277 338 aaPredicted RBP14.53□□□□□ -0.08
CDH1-207ENST00000564745 CACNB1Q02641 598 aaPredicted RBP14.43□□□□□ -0.1
CDH1-207ENST00000564745 FOXD4L1Q9NU39 408 aa14.36□□□□□ -0.11
CDH1-207ENST00000564745 SLC4A2P04920 1241 aa14.25□□□□□ -0.13
CDH1-207ENST00000564745 DCAF8L1A6NGE4 600 aa14.14□□□□□ -0.15
CDH1-207ENST00000564745 RNF39Q9H2S5 420 aa13.98□□□□□ -0.17
CDH1-207ENST00000564745 MYCNP04198 464 aaPredicted RBP13.93□□□□□ -0.18
CDH1-207ENST00000564745 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.84□□□□□ -0.19
CDH1-207ENST00000564745 ATXN8OSP0DMR3 200 aa13.76□□□□□ -0.21
CDH1-207ENST00000564745 C1QBPQ07021 282 aaKnown RBP13.75□□□□□ -0.21
CDH1-207ENST00000564745 U3KPZ7 1027 aaPredicted RBP13.73□□□□□ -0.21
CDH1-207ENST00000564745 ATF5Q9Y2D1 282 aaPredicted RBP13.68□□□□□ -0.22
CDH1-207ENST00000564745 SAMD1Q6SPF0 538 aaPredicted RBP13.54□□□□□ -0.24
CDH1-207ENST00000564745 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.53□□□□□ -0.24
CDH1-207ENST00000564745 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
CDH1-207ENST00000564745 FKBP8Q14318 412 aa13.37□□□□□ -0.27
CDH1-207ENST00000564745 ZNF219Q9P2Y4 722 aaPredicted RBP13.32□□□□□ -0.28
CDH1-207ENST00000564745 POTEHQ6S545 545 aa13.27□□□□□ -0.29
CDH1-207ENST00000564745 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
CDH1-207ENST00000564745 APLP2Q06481 763 aa13.25□□□□□ -0.29
CDH1-207ENST00000564745 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
CDH1-207ENST00000564745 CAPN15O75808 1086 aa13.11□□□□□ -0.31
CDH1-207ENST00000564745 MKRN4PQ13434 485 aaPredicted RBP13.07□□□□□ -0.32
CDH1-207ENST00000564745 POLA2Q14181 598 aa13.05□□□□□ -0.32
CDH1-207ENST00000564745 ABCB7O75027 752 aa12.96□□□□□ -0.33
CDH1-207ENST00000564745 RTN4Q9NQC3 1192 aaKnown RBP12.94□□□□□ -0.34
CDH1-207ENST00000564745 DSG3P32926 999 aa12.92□□□□□ -0.34
CDH1-207ENST00000564745 SPDYE4A6NLX3 237 aa12.91□□□□□ -0.34
CDH1-207ENST00000564745 FBLN2P98095 1184 aa12.9□□□□□ -0.34
CDH1-207ENST00000564745 AMER1Q5JTC6 1135 aaPredicted RBP12.83□□□□□ -0.36
CDH1-207ENST00000564745 PROM2Q8N271 834 aa12.75□□□□□ -0.37
CDH1-207ENST00000564745 ZBTB12Q9Y330 459 aaPredicted RBP12.73□□□□□ -0.37
CDH1-207ENST00000564745 FBXO3Q9UK99 471 aa12.65□□□□□ -0.38
CDH1-207ENST00000564745 OSCARQ8IYS5 282 aa12.61□□□□□ -0.39
CDH1-207ENST00000564745 VASPP50552 380 aaPredicted RBP12.55□□□□□ -0.4
CDH1-207ENST00000564745 ZNF692Q9BU19 519 aaPredicted RBP12.55□□□□□ -0.4
CDH1-207ENST00000564745 SPDYE2BA6NHP3 402 aa12.47□□□□□ -0.41
CDH1-207ENST00000564745 SPDYE6P0CI01 402 aa12.47□□□□□ -0.41
CDH1-207ENST00000564745 SPDYE2Q495Y8 402 aa12.47□□□□□ -0.41
CDH1-207ENST00000564745 IFNLR1Q8IU57 520 aaPredicted RBP12.47□□□□□ -0.41
CDH1-207ENST00000564745 SSUH2Q9Y2M2 353 aa12.47□□□□□ -0.41
CDH1-207ENST00000564745 PABPN1Q86U42 306 aaKnown RBP eCLIP12.42□□□□□ -0.42
CDH1-207ENST00000564745 RBM42Q9BTD8 480 aaKnown RBP12.39□□□□□ -0.43
CDH1-207ENST00000564745 SLC24A1O60721 1099 aa12.31□□□□□ -0.44
CDH1-207ENST00000564745 STAG3Q9UJ98 1225 aa12.27□□□□□ -0.45
CDH1-207ENST00000564745 CHRDL2Q6WN34 429 aa12.25□□□□□ -0.45
CDH1-207ENST00000564745 KLHL34Q8N239 644 aa12.23□□□□□ -0.45
CDH1-207ENST00000564745 PKD2Q13563 968 aa12.22□□□□□ -0.45
CDH1-207ENST00000564745 PLCD3Q8N3E9 789 aa12.21□□□□□ -0.45
CDH1-207ENST00000564745 MIER1Q8N108 512 aa12.19□□□□□ -0.46
CDH1-207ENST00000564745 SPOCK2Q92563 424 aa12.17□□□□□ -0.46
CDH1-207ENST00000564745 SP7Q8TDD2 431 aaPredicted RBP12.15□□□□□ -0.46
CDH1-207ENST00000564745 AKT1S1Q96B36 256 aa12.12□□□□□ -0.47
CDH1-207ENST00000564745 DCAF8L2P0C7V8 631 aa12.08□□□□□ -0.48
CDH1-207ENST00000564745 ECM2O94769 699 aaPredicted RBP12.01□□□□□ -0.49
CDH1-207ENST00000564745 REM2Q8IYK8 340 aaPredicted RBP12.01□□□□□ -0.49
CDH1-207ENST00000564745 CLEC11AQ9Y240 323 aa12.01□□□□□ -0.49
CDH1-207ENST00000564745 SPDYE1Q8NFV5 336 aaPredicted RBP12□□□□□ -0.49
CDH1-207ENST00000564745 PLEKHG5O94827 1062 aa11.98□□□□□ -0.49
CDH1-207ENST00000564745 CIZ1Q9ULV3 898 aaPredicted RBP11.95□□□□□ -0.5
CDH1-207ENST00000564745 RGL2O15211 777 aa11.94□□□□□ -0.5
CDH1-207ENST00000564745 ZBTB47Q9UFB7 747 aaPredicted RBP11.94□□□□□ -0.5
CDH1-207ENST00000564745 PRR29P0C7W0 189 aa11.92□□□□□ -0.5
CDH1-207ENST00000564745 CREBZFQ9NS37 354 aa11.92□□□□□ -0.5
CDH1-207ENST00000564745 PLCB2Q00722 1185 aa11.91□□□□□ -0.5
CDH1-207ENST00000564745 PITPNM1O00562 1244 aa11.88□□□□□ -0.51
CDH1-207ENST00000564745 NPM1P06748 294 aaKnown RBP eCLIP11.88□□□□□ -0.51
CDH1-207ENST00000564745 NUBP1P53384 320 aa11.87□□□□□ -0.51
CDH1-207ENST00000564745 MNX1P50219 401 aaPredicted RBP11.85□□□□□ -0.51
CDH1-207ENST00000564745 PIP4P2Q8N4L2 257 aa11.82□□□□□ -0.52
CDH1-207ENST00000564745 DCAF8Q5TAQ9 597 aa11.77□□□□□ -0.53
CDH1-207ENST00000564745 HAP1P54257 671 aaPredicted RBP11.76□□□□□ -0.53
CDH1-207ENST00000564745 GSE1Q14687 1217 aa11.76□□□□□ -0.53
CDH1-207ENST00000564745 RNF25Q96BH1 459 aaPredicted RBP11.76□□□□□ -0.53
CDH1-207ENST00000564745 RASEFQ8IZ41 740 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms