RNA–Protein interactions for RNA: ENST00000564600.6

CHD9-211, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-211ENST00000564600 AEBP2Q6ZN18 517 aaPredicted RBP22.66■■□□□ 1.22
CHD9-211ENST00000564600 CHIC1Q5VXU3 224 aa21.23■□□□□ 0.99
CHD9-211ENST00000564600 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
CHD9-211ENST00000564600 PHF23Q9BUL5 403 aaPredicted RBP18.99■□□□□ 0.63
CHD9-211ENST00000564600 FOXD1Q16676 465 aa18.02■□□□□ 0.48
CHD9-211ENST00000564600 PLPPR3Q6T4P5 718 aa16.84■□□□□ 0.29
CHD9-211ENST00000564600 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
CHD9-211ENST00000564600 PIAS4Q8N2W9 510 aaPredicted RBP16.78■□□□□ 0.28
CHD9-211ENST00000564600 POTEDQ86YR6 584 aa16.77■□□□□ 0.28
CHD9-211ENST00000564600 ADRA2BP18089 450 aa16.75■□□□□ 0.27
CHD9-211ENST00000564600 MSH5O43196 834 aa16.74■□□□□ 0.27
CHD9-211ENST00000564600 MAPK8IP2Q13387 824 aaPredicted RBP15.47■□□□□ 0.07
CHD9-211ENST00000564600 DMRT2Q9Y5R5 561 aa15.2■□□□□ 0.02
CHD9-211ENST00000564600 SCAF1Q9H7N4 1312 aaKnown RBP15.05■□□□□ -0
CHD9-211ENST00000564600 PPP4R3CPQ6ZMV5 832 aa14.83□□□□□ -0.04
CHD9-211ENST00000564600 DCAF8L1A6NGE4 600 aa14.75□□□□□ -0.05
CHD9-211ENST00000564600 CACNB1Q02641 598 aaPredicted RBP14.59□□□□□ -0.07
CHD9-211ENST00000564600 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
CHD9-211ENST00000564600 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
CHD9-211ENST00000564600 RNF216Q9NWF9 866 aaPredicted RBP14.39□□□□□ -0.11
CHD9-211ENST00000564600 RNF39Q9H2S5 420 aa14.34□□□□□ -0.11
CHD9-211ENST00000564600 NCBP3Q53F19 620 aaKnown RBP14.08□□□□□ -0.16
CHD9-211ENST00000564600 NPM3O75607 178 aaKnown RBP14.04□□□□□ -0.16
CHD9-211ENST00000564600 C1QBPQ07021 282 aaKnown RBP14.04□□□□□ -0.16
CHD9-211ENST00000564600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.95□□□□□ -0.18
CHD9-211ENST00000564600 DNAJC5BQ9UF47 199 aa13.86□□□□□ -0.19
CHD9-211ENST00000564600 KCNA4P22459 653 aa13.7□□□□□ -0.22
CHD9-211ENST00000564600 U3KPZ7 1027 aaPredicted RBP13.66□□□□□ -0.22
CHD9-211ENST00000564600 SPINK5Q9NQ38 1064 aaPredicted RBP13.59□□□□□ -0.23
CHD9-211ENST00000564600 CAPN15O75808 1086 aa13.51□□□□□ -0.25
CHD9-211ENST00000564600 SLC4A2P04920 1241 aa13.47□□□□□ -0.25
CHD9-211ENST00000564600 DSG3P32926 999 aa13.42□□□□□ -0.26
CHD9-211ENST00000564600 TRHP20396 242 aaPredicted RBP13.3□□□□□ -0.28
CHD9-211ENST00000564600 ABCB7O75027 752 aa13.29□□□□□ -0.28
CHD9-211ENST00000564600 POTEHQ6S545 545 aa13.08□□□□□ -0.32
CHD9-211ENST00000564600 ZNF219Q9P2Y4 722 aaPredicted RBP13.07□□□□□ -0.32
CHD9-211ENST00000564600 APLP2Q06481 763 aa13□□□□□ -0.33
CHD9-211ENST00000564600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
CHD9-211ENST00000564600 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
CHD9-211ENST00000564600 SAMD1Q6SPF0 538 aaPredicted RBP12.98□□□□□ -0.33
CHD9-211ENST00000564600 MYCNP04198 464 aaPredicted RBP12.89□□□□□ -0.35
CHD9-211ENST00000564600 POLA2Q14181 598 aa12.86□□□□□ -0.35
CHD9-211ENST00000564600 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
CHD9-211ENST00000564600 ATF5Q9Y2D1 282 aaPredicted RBP12.82□□□□□ -0.36
CHD9-211ENST00000564600 FOXD4L1Q9NU39 408 aa12.7□□□□□ -0.38
CHD9-211ENST00000564600 RBM42Q9BTD8 480 aaKnown RBP12.66□□□□□ -0.38
CHD9-211ENST00000564600 ZBTB22O15209 634 aa12.64□□□□□ -0.39
CHD9-211ENST00000564600 CHRDL2Q6WN34 429 aa12.57□□□□□ -0.4
CHD9-211ENST00000564600 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
CHD9-211ENST00000564600 AKT1S1Q96B36 256 aa12.39□□□□□ -0.43
CHD9-211ENST00000564600 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
CHD9-211ENST00000564600 ZBTB12Q9Y330 459 aaPredicted RBP12.37□□□□□ -0.43
CHD9-211ENST00000564600 PIP4P2Q8N4L2 257 aa12.29□□□□□ -0.44
CHD9-211ENST00000564600 PITPNM1O00562 1244 aa12.28□□□□□ -0.44
CHD9-211ENST00000564600 ATXN8OSP0DMR3 200 aa12.19□□□□□ -0.46
CHD9-211ENST00000564600 SP7Q8TDD2 431 aaPredicted RBP12.17□□□□□ -0.46
CHD9-211ENST00000564600 MKRN4PQ13434 485 aaPredicted RBP12.16□□□□□ -0.46
CHD9-211ENST00000564600 FXR2P51116 673 aaKnown RBP eCLIP12.12□□□□□ -0.47
CHD9-211ENST00000564600 HAX1O00165 279 aa12.11□□□□□ -0.47
CHD9-211ENST00000564600 FBLN2P98095 1184 aa12.11□□□□□ -0.47
CHD9-211ENST00000564600 EVX2Q03828 476 aa12.06□□□□□ -0.48
CHD9-211ENST00000564600 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
CHD9-211ENST00000564600 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
CHD9-211ENST00000564600 SPDYE2Q495Y8 402 aa12.05□□□□□ -0.48
CHD9-211ENST00000564600 CLEC11AQ9Y240 323 aa12.05□□□□□ -0.48
CHD9-211ENST00000564600 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
CHD9-211ENST00000564600 PRKAR2AP13861 404 aaKnown RBP11.95□□□□□ -0.5
CHD9-211ENST00000564600 SSUH2Q9Y2M2 353 aa11.92□□□□□ -0.5
CHD9-211ENST00000564600 CHADLQ6NUI6 762 aa11.9□□□□□ -0.5
CHD9-211ENST00000564600 SPDYE1Q8NFV5 336 aaPredicted RBP11.9□□□□□ -0.5
CHD9-211ENST00000564600 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
CHD9-211ENST00000564600 PABPN1Q86U42 306 aaKnown RBP eCLIP11.84□□□□□ -0.51
CHD9-211ENST00000564600 EHMT2Q96KQ7 1210 aa11.75□□□□□ -0.53
CHD9-211ENST00000564600 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
CHD9-211ENST00000564600 PRR29P0C7W0 189 aa11.73□□□□□ -0.53
CHD9-211ENST00000564600 GABBR2O75899 941 aa11.66□□□□□ -0.54
CHD9-211ENST00000564600 FARP1Q9Y4F1 1045 aaPredicted RBP11.56□□□□□ -0.56
CHD9-211ENST00000564600 CD44P16070 742 aaKnown RBP11.55□□□□□ -0.56
CHD9-211ENST00000564600 POTEIP0CG38 1075 aa11.48□□□□□ -0.57
CHD9-211ENST00000564600 CREBZFQ9NS37 354 aa11.45□□□□□ -0.58
CHD9-211ENST00000564600 SPDYE4A6NLX3 237 aa11.44□□□□□ -0.58
CHD9-211ENST00000564600 LHX8Q68G74 356 aa11.43□□□□□ -0.58
CHD9-211ENST00000564600 ZRANB1Q9UGI0 708 aa11.39□□□□□ -0.59
CHD9-211ENST00000564600 GALR2O43603 387 aaPredicted RBP11.31□□□□□ -0.6
CHD9-211ENST00000564600 ZNF579Q8NAF0 562 aaKnown RBP11.29□□□□□ -0.6
CHD9-211ENST00000564600 STAG3Q9UJ98 1225 aa11.29□□□□□ -0.6
CHD9-211ENST00000564600 DCBLD2Q96PD2 775 aa11.28□□□□□ -0.6
CHD9-211ENST00000564600 PHF12Q96QT6 1004 aa11.28□□□□□ -0.6
CHD9-211ENST00000564600 MNX1P50219 401 aaPredicted RBP11.22□□□□□ -0.61
CHD9-211ENST00000564600 POTEB2H3BUK9 544 aa11.13□□□□□ -0.63
CHD9-211ENST00000564600 PAK3O75914 559 aaPredicted RBP11.13□□□□□ -0.63
CHD9-211ENST00000564600 PELP1Q8IZL8 1130 aaKnown RBP11.12□□□□□ -0.63
CHD9-211ENST00000564600 CLCN6P51797 869 aa11.11□□□□□ -0.63
CHD9-211ENST00000564600 NPM1P06748 294 aaKnown RBP eCLIP11.1□□□□□ -0.63
CHD9-211ENST00000564600 TSPYL2Q9H2G4 693 aaPredicted RBP11.1□□□□□ -0.63
CHD9-211ENST00000564600 MS4A3Q96HJ5 214 aa11.08□□□□□ -0.64
CHD9-211ENST00000564600 PROM2Q8N271 834 aa11.05□□□□□ -0.64
CHD9-211ENST00000564600 OTUD5Q96G74 571 aa11.05□□□□□ -0.64
CHD9-211ENST00000564600 TRPC6Q9Y210 931 aa10.98□□□□□ -0.65
CHD9-211ENST00000564600 ATMINO43313 823 aaPredicted RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms