RNA–Protein interactions for RNA: ENST00000564239.1

BBS4-207, Transcript of Bardet-Biedl syndrome 4, humanhuman

TSL 5

Gene BBS4, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BBS4-207ENST00000564239 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
BBS4-207ENST00000564239 CHIC1Q5VXU3 224 aa24.52■■□□□ 1.52
BBS4-207ENST00000564239 PHF23Q9BUL5 403 aaPredicted RBP21.59■■□□□ 1.05
BBS4-207ENST00000564239 SENP3Q9H4L4 574 aaPredicted RBP21.23■□□□□ 0.99
BBS4-207ENST00000564239 PLPPR3Q6T4P5 718 aa19.93■□□□□ 0.78
BBS4-207ENST00000564239 FOXD1Q16676 465 aa19.71■□□□□ 0.75
BBS4-207ENST00000564239 PPP6R1Q9UPN7 881 aa19.04■□□□□ 0.64
BBS4-207ENST00000564239 ADRA2BP18089 450 aa19.01■□□□□ 0.63
BBS4-207ENST00000564239 PIAS4Q8N2W9 510 aaPredicted RBP18.59■□□□□ 0.57
BBS4-207ENST00000564239 MSH5O43196 834 aa18.12■□□□□ 0.49
BBS4-207ENST00000564239 PPP4R3CPQ6ZMV5 832 aa17.58■□□□□ 0.4
BBS4-207ENST00000564239 SCAF1Q9H7N4 1312 aaKnown RBP17.37■□□□□ 0.37
BBS4-207ENST00000564239 KCNA4P22459 653 aa17.26■□□□□ 0.35
BBS4-207ENST00000564239 MAPK8IP2Q13387 824 aaPredicted RBP17.23■□□□□ 0.35
BBS4-207ENST00000564239 NCBP3Q53F19 620 aaKnown RBP17.11■□□□□ 0.33
BBS4-207ENST00000564239 CNKSR2Q8WXI2 1034 aa17.06■□□□□ 0.32
BBS4-207ENST00000564239 DMRT2Q9Y5R5 561 aa16.96■□□□□ 0.31
BBS4-207ENST00000564239 NPM3O75607 178 aaKnown RBP16.89■□□□□ 0.29
BBS4-207ENST00000564239 RNF216Q9NWF9 866 aaPredicted RBP16.72■□□□□ 0.27
BBS4-207ENST00000564239 HOXD11P31277 338 aaPredicted RBP16.65■□□□□ 0.26
BBS4-207ENST00000564239 SLC4A1APQ9BWU0 796 aaKnown RBP16.43■□□□□ 0.22
BBS4-207ENST00000564239 POTEDQ86YR6 584 aa16.41■□□□□ 0.22
BBS4-207ENST00000564239 DNAJC5BQ9UF47 199 aa16.41■□□□□ 0.22
BBS4-207ENST00000564239 DCAF8L1A6NGE4 600 aa16.2■□□□□ 0.18
BBS4-207ENST00000564239 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
BBS4-207ENST00000564239 SLC4A2P04920 1241 aa15.95■□□□□ 0.14
BBS4-207ENST00000564239 ZBTB22O15209 634 aa15.89■□□□□ 0.13
BBS4-207ENST00000564239 CSRNP3Q8WYN3 585 aa15.85■□□□□ 0.13
BBS4-207ENST00000564239 FOXD4L1Q9NU39 408 aa15.85■□□□□ 0.13
BBS4-207ENST00000564239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.84■□□□□ 0.13
BBS4-207ENST00000564239 U3KPZ7 1027 aaPredicted RBP15.62■□□□□ 0.09
BBS4-207ENST00000564239 MYCNP04198 464 aaPredicted RBP15.59■□□□□ 0.09
BBS4-207ENST00000564239 RNF39Q9H2S5 420 aa15.56■□□□□ 0.08
BBS4-207ENST00000564239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.41■□□□□ 0.06
BBS4-207ENST00000564239 HNRNPUL2Q1KMD3 747 aaKnown RBP15.41■□□□□ 0.06
BBS4-207ENST00000564239 SAMD1Q6SPF0 538 aaPredicted RBP15.37■□□□□ 0.05
BBS4-207ENST00000564239 C1QBPQ07021 282 aaKnown RBP15.36■□□□□ 0.05
BBS4-207ENST00000564239 ATXN8OSP0DMR3 200 aa15.29■□□□□ 0.04
BBS4-207ENST00000564239 APLP2Q06481 763 aa15.22■□□□□ 0.03
BBS4-207ENST00000564239 ATF5Q9Y2D1 282 aaPredicted RBP15.2■□□□□ 0.02
BBS4-207ENST00000564239 SPINK5Q9NQ38 1064 aaPredicted RBP15.16■□□□□ 0.02
BBS4-207ENST00000564239 CACNB1Q02641 598 aaPredicted RBP15.08■□□□□ 0
BBS4-207ENST00000564239 CAPN15O75808 1086 aa15.07■□□□□ 0
BBS4-207ENST00000564239 TRHP20396 242 aaPredicted RBP15.02■□□□□ -0
BBS4-207ENST00000564239 ZNF219Q9P2Y4 722 aaPredicted RBP15.02■□□□□ -0
BBS4-207ENST00000564239 DSG3P32926 999 aa14.83□□□□□ -0.04
BBS4-207ENST00000564239 POLA2Q14181 598 aa14.81□□□□□ -0.04
BBS4-207ENST00000564239 ABCB7O75027 752 aa14.8□□□□□ -0.04
BBS4-207ENST00000564239 MKRN4PQ13434 485 aaPredicted RBP14.54□□□□□ -0.08
BBS4-207ENST00000564239 ZBTB12Q9Y330 459 aaPredicted RBP14.54□□□□□ -0.08
BBS4-207ENST00000564239 FBLN2P98095 1184 aa14.51□□□□□ -0.09
BBS4-207ENST00000564239 FKBP8Q14318 412 aa14.3□□□□□ -0.12
BBS4-207ENST00000564239 OSCARQ8IYS5 282 aa14.29□□□□□ -0.12
BBS4-207ENST00000564239 SPDYE4A6NLX3 237 aa14.23□□□□□ -0.13
BBS4-207ENST00000564239 SPDYE2BA6NHP3 402 aa14.17□□□□□ -0.14
BBS4-207ENST00000564239 SPDYE6P0CI01 402 aa14.17□□□□□ -0.14
BBS4-207ENST00000564239 SPDYE2Q495Y8 402 aa14.17□□□□□ -0.14
BBS4-207ENST00000564239 ZNF692Q9BU19 519 aaPredicted RBP14.12□□□□□ -0.15
BBS4-207ENST00000564239 RBM42Q9BTD8 480 aaKnown RBP14.11□□□□□ -0.15
BBS4-207ENST00000564239 SSUH2Q9Y2M2 353 aa14.08□□□□□ -0.16
BBS4-207ENST00000564239 PROM2Q8N271 834 aa14.02□□□□□ -0.17
BBS4-207ENST00000564239 PABPN1Q86U42 306 aaKnown RBP eCLIP13.95□□□□□ -0.18
BBS4-207ENST00000564239 AKT1S1Q96B36 256 aa13.95□□□□□ -0.18
BBS4-207ENST00000564239 REM2Q8IYK8 340 aaPredicted RBP13.83□□□□□ -0.2
BBS4-207ENST00000564239 FBXO3Q9UK99 471 aa13.76□□□□□ -0.21
BBS4-207ENST00000564239 SPDYE1Q8NFV5 336 aaPredicted RBP13.73□□□□□ -0.21
BBS4-207ENST00000564239 STAG3Q9UJ98 1225 aa13.71□□□□□ -0.21
BBS4-207ENST00000564239 PITPNM1O00562 1244 aa13.67□□□□□ -0.22
BBS4-207ENST00000564239 CLEC11AQ9Y240 323 aa13.66□□□□□ -0.22
BBS4-207ENST00000564239 VASPP50552 380 aaPredicted RBP13.59□□□□□ -0.23
BBS4-207ENST00000564239 PRR29P0C7W0 189 aa13.56□□□□□ -0.24
BBS4-207ENST00000564239 CHRDL2Q6WN34 429 aa13.51□□□□□ -0.25
BBS4-207ENST00000564239 MIER1Q8N108 512 aa13.48□□□□□ -0.25
BBS4-207ENST00000564239 PLCD3Q8N3E9 789 aa13.46□□□□□ -0.25
BBS4-207ENST00000564239 IFNLR1Q8IU57 520 aaPredicted RBP13.43□□□□□ -0.26
BBS4-207ENST00000564239 CREBZFQ9NS37 354 aa13.41□□□□□ -0.26
BBS4-207ENST00000564239 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
BBS4-207ENST00000564239 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
BBS4-207ENST00000564239 PIP4P2Q8N4L2 257 aa13.35□□□□□ -0.27
BBS4-207ENST00000564239 CHADLQ6NUI6 762 aa13.34□□□□□ -0.27
BBS4-207ENST00000564239 PRKAR2AP13861 404 aaKnown RBP13.32□□□□□ -0.28
BBS4-207ENST00000564239 KLHL34Q8N239 644 aa13.32□□□□□ -0.28
BBS4-207ENST00000564239 MNX1P50219 401 aaPredicted RBP13.3□□□□□ -0.28
BBS4-207ENST00000564239 ZBTB47Q9UFB7 747 aaPredicted RBP13.3□□□□□ -0.28
BBS4-207ENST00000564239 SPOCK2Q92563 424 aa13.23□□□□□ -0.29
BBS4-207ENST00000564239 FARP1Q9Y4F1 1045 aaPredicted RBP13.22□□□□□ -0.29
BBS4-207ENST00000564239 NPM1P06748 294 aaKnown RBP eCLIP13.17□□□□□ -0.3
BBS4-207ENST00000564239 NUBP1P53384 320 aa13.14□□□□□ -0.31
BBS4-207ENST00000564239 AMER1Q5JTC6 1135 aaPredicted RBP13.14□□□□□ -0.31
BBS4-207ENST00000564239 RTN4Q9NQC3 1192 aaKnown RBP13.13□□□□□ -0.31
BBS4-207ENST00000564239 RASEFQ8IZ41 740 aa13.07□□□□□ -0.32
BBS4-207ENST00000564239 PKD2Q13563 968 aa13.01□□□□□ -0.33
BBS4-207ENST00000564239 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
BBS4-207ENST00000564239 CIZ1Q9ULV3 898 aaPredicted RBP13.01□□□□□ -0.33
BBS4-207ENST00000564239 DCAF8Q5TAQ9 597 aa13□□□□□ -0.33
BBS4-207ENST00000564239 POTEHQ6S545 545 aa13□□□□□ -0.33
BBS4-207ENST00000564239 GSE1Q14687 1217 aa12.99□□□□□ -0.33
BBS4-207ENST00000564239 TSPYL2Q9H2G4 693 aaPredicted RBP12.97□□□□□ -0.33
BBS4-207ENST00000564239 C19orf67A6NJJ6 358 aa12.94□□□□□ -0.34
BBS4-207ENST00000564239 CD44P16070 742 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms