RNA–Protein interactions for RNA: ENST00000563573.5

CDR2-203, Transcript of cerebellar degeneration related protein 2, humanhuman

TSL 4

Gene CDR2, Length 556 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDR2-203ENST00000563573 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
CDR2-203ENST00000563573 CHIC1Q5VXU3 224 aa21.38■■□□□ 1.01
CDR2-203ENST00000563573 SENP3Q9H4L4 574 aaPredicted RBP19.06■□□□□ 0.64
CDR2-203ENST00000563573 PHF23Q9BUL5 403 aaPredicted RBP18.78■□□□□ 0.6
CDR2-203ENST00000563573 FOXD1Q16676 465 aa17.64■□□□□ 0.41
CDR2-203ENST00000563573 PLPPR3Q6T4P5 718 aa17.23■□□□□ 0.35
CDR2-203ENST00000563573 PPP6R1Q9UPN7 881 aa16.6■□□□□ 0.25
CDR2-203ENST00000563573 ADRA2BP18089 450 aa16.58■□□□□ 0.24
CDR2-203ENST00000563573 PIAS4Q8N2W9 510 aaPredicted RBP16.57■□□□□ 0.24
CDR2-203ENST00000563573 MSH5O43196 834 aa16.55■□□□□ 0.24
CDR2-203ENST00000563573 POTEDQ86YR6 584 aa15.69■□□□□ 0.1
CDR2-203ENST00000563573 SCAF1Q9H7N4 1312 aaKnown RBP15.37■□□□□ 0.05
CDR2-203ENST00000563573 MAPK8IP2Q13387 824 aaPredicted RBP15.14■□□□□ 0.01
CDR2-203ENST00000563573 DMRT2Q9Y5R5 561 aa15.11■□□□□ 0.01
CDR2-203ENST00000563573 PPP4R3CPQ6ZMV5 832 aa15.08■□□□□ 0
CDR2-203ENST00000563573 CNKSR2Q8WXI2 1034 aa14.8□□□□□ -0.04
CDR2-203ENST00000563573 NCBP3Q53F19 620 aaKnown RBP14.67□□□□□ -0.06
CDR2-203ENST00000563573 HOXD11P31277 338 aaPredicted RBP14.65□□□□□ -0.06
CDR2-203ENST00000563573 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
CDR2-203ENST00000563573 DCAF8L1A6NGE4 600 aa14.46□□□□□ -0.09
CDR2-203ENST00000563573 NPM3O75607 178 aaKnown RBP14.32□□□□□ -0.12
CDR2-203ENST00000563573 KCNA4P22459 653 aa14.2□□□□□ -0.14
CDR2-203ENST00000563573 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
CDR2-203ENST00000563573 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
CDR2-203ENST00000563573 CACNB1Q02641 598 aaPredicted RBP14.03□□□□□ -0.16
CDR2-203ENST00000563573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.97□□□□□ -0.175e-8■■□□□ 13.2
CDR2-203ENST00000563573 C1QBPQ07021 282 aaKnown RBP13.95□□□□□ -0.18
CDR2-203ENST00000563573 U3KPZ7 1027 aaPredicted RBP13.63□□□□□ -0.23
CDR2-203ENST00000563573 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
CDR2-203ENST00000563573 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
CDR2-203ENST00000563573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
CDR2-203ENST00000563573 APLP2Q06481 763 aa13.48□□□□□ -0.25
CDR2-203ENST00000563573 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
CDR2-203ENST00000563573 CAPN15O75808 1086 aa13.38□□□□□ -0.27
CDR2-203ENST00000563573 SAMD1Q6SPF0 538 aaPredicted RBP13.37□□□□□ -0.27
CDR2-203ENST00000563573 SPINK5Q9NQ38 1064 aaPredicted RBP13.34□□□□□ -0.27
CDR2-203ENST00000563573 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
CDR2-203ENST00000563573 FOXD4L1Q9NU39 408 aa13.27□□□□□ -0.29
CDR2-203ENST00000563573 ZNF219Q9P2Y4 722 aaPredicted RBP13.26□□□□□ -0.29
CDR2-203ENST00000563573 DSG3P32926 999 aa13.23□□□□□ -0.29
CDR2-203ENST00000563573 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
CDR2-203ENST00000563573 ABCB7O75027 752 aa13.03□□□□□ -0.32
CDR2-203ENST00000563573 ZBTB22O15209 634 aa13□□□□□ -0.33
CDR2-203ENST00000563573 ATXN8OSP0DMR3 200 aa12.91□□□□□ -0.34
CDR2-203ENST00000563573 POLA2Q14181 598 aa12.91□□□□□ -0.34
CDR2-203ENST00000563573 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
CDR2-203ENST00000563573 ZBTB12Q9Y330 459 aaPredicted RBP12.78□□□□□ -0.36
CDR2-203ENST00000563573 RBM42Q9BTD8 480 aaKnown RBP12.74□□□□□ -0.37
CDR2-203ENST00000563573 CSRNP3Q8WYN3 585 aa12.64□□□□□ -0.39
CDR2-203ENST00000563573 EHMT2Q96KQ7 1210 aa12.57□□□□□ -0.4
CDR2-203ENST00000563573 FBLN2P98095 1184 aa12.52□□□□□ -0.41
CDR2-203ENST00000563573 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
CDR2-203ENST00000563573 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
CDR2-203ENST00000563573 POTEHQ6S545 545 aa12.37□□□□□ -0.43
CDR2-203ENST00000563573 SPDYE2BA6NHP3 402 aa12.35□□□□□ -0.43
CDR2-203ENST00000563573 SPDYE6P0CI01 402 aa12.35□□□□□ -0.43
CDR2-203ENST00000563573 SPDYE2Q495Y8 402 aa12.35□□□□□ -0.43
CDR2-203ENST00000563573 MKRN4PQ13434 485 aaPredicted RBP12.3□□□□□ -0.44
CDR2-203ENST00000563573 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
CDR2-203ENST00000563573 REM2Q8IYK8 340 aaPredicted RBP12.28□□□□□ -0.44
CDR2-203ENST00000563573 ZNF692Q9BU19 519 aaPredicted RBP12.2□□□□□ -0.46
CDR2-203ENST00000563573 SSUH2Q9Y2M2 353 aa12.15□□□□□ -0.46
CDR2-203ENST00000563573 PITPNM1O00562 1244 aa12.11□□□□□ -0.47
CDR2-203ENST00000563573 SPDYE1Q8NFV5 336 aaPredicted RBP12.09□□□□□ -0.47
CDR2-203ENST00000563573 FXR2P51116 673 aaKnown RBP eCLIP12.01□□□□□ -0.49
CDR2-203ENST00000563573 PIP4P2Q8N4L2 257 aa12.01□□□□□ -0.49
CDR2-203ENST00000563573 PABPN1Q86U42 306 aaKnown RBP eCLIP12□□□□□ -0.49
CDR2-203ENST00000563573 CLEC11AQ9Y240 323 aa11.99□□□□□ -0.49
CDR2-203ENST00000563573 SPDYE4A6NLX3 237 aa11.9□□□□□ -0.5
CDR2-203ENST00000563573 PRR29P0C7W0 189 aa11.87□□□□□ -0.51
CDR2-203ENST00000563573 PRKAR2AP13861 404 aaKnown RBP11.83□□□□□ -0.52
CDR2-203ENST00000563573 STAG3Q9UJ98 1225 aa11.83□□□□□ -0.52
CDR2-203ENST00000563573 HAX1O00165 279 aa11.78□□□□□ -0.52
CDR2-203ENST00000563573 SP7Q8TDD2 431 aaPredicted RBP11.71□□□□□ -0.53
CDR2-203ENST00000563573 CHADLQ6NUI6 762 aa11.68□□□□□ -0.54
CDR2-203ENST00000563573 PROM2Q8N271 834 aa11.63□□□□□ -0.55
CDR2-203ENST00000563573 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
CDR2-203ENST00000563573 FARP1Q9Y4F1 1045 aaPredicted RBP11.6□□□□□ -0.55
CDR2-203ENST00000563573 CREBZFQ9NS37 354 aa11.55□□□□□ -0.56
CDR2-203ENST00000563573 EVX2Q03828 476 aa11.53□□□□□ -0.56
CDR2-203ENST00000563573 FKBP8Q14318 412 aa11.48□□□□□ -0.57
CDR2-203ENST00000563573 NPM1P06748 294 aaKnown RBP eCLIP11.47□□□□□ -0.57
CDR2-203ENST00000563573 CD44P16070 742 aaKnown RBP11.47□□□□□ -0.57
CDR2-203ENST00000563573 CLCN6P51797 869 aa11.44□□□□□ -0.58
CDR2-203ENST00000563573 PLEKHG5O94827 1062 aa11.43□□□□□ -0.58
CDR2-203ENST00000563573 PAK3O75914 559 aaPredicted RBP11.39□□□□□ -0.59
CDR2-203ENST00000563573 GABBR2O75899 941 aa11.38□□□□□ -0.59
CDR2-203ENST00000563573 MNX1P50219 401 aaPredicted RBP11.36□□□□□ -0.59
CDR2-203ENST00000563573 MIER1Q8N108 512 aa11.36□□□□□ -0.59
CDR2-203ENST00000563573 ZRANB1Q9UGI0 708 aa11.35□□□□□ -0.59
CDR2-203ENST00000563573 ZNF579Q8NAF0 562 aaKnown RBP11.32□□□□□ -0.6
CDR2-203ENST00000563573 FBXO3Q9UK99 471 aa11.32□□□□□ -0.6
CDR2-203ENST00000563573 PLCD3Q8N3E9 789 aa11.3□□□□□ -0.6
CDR2-203ENST00000563573 ZBTB47Q9UFB7 747 aaPredicted RBP11.29□□□□□ -0.6
CDR2-203ENST00000563573 DCBLD2Q96PD2 775 aa11.18□□□□□ -0.62
CDR2-203ENST00000563573 TSPYL2Q9H2G4 693 aaPredicted RBP11.15□□□□□ -0.62
CDR2-203ENST00000563573 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
CDR2-203ENST00000563573 GALR2O43603 387 aaPredicted RBP11.1□□□□□ -0.63
CDR2-203ENST00000563573 CCDC61Q9Y6R9 512 aa11.1□□□□□ -0.63
CDR2-203ENST00000563573 RASEFQ8IZ41 740 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms