RNA–Protein interactions for RNA: ENST00000562791.1

CHD9-206, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 242 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-206ENST00000562791 AEBP2Q6ZN18 517 aaPredicted RBP28.71■■■□□ 2.19
CHD9-206ENST00000562791 CHIC1Q5VXU3 224 aa27.61■■■□□ 2.01
CHD9-206ENST00000562791 SENP3Q9H4L4 574 aaPredicted RBP24.31■■□□□ 1.48
CHD9-206ENST00000562791 PHF23Q9BUL5 403 aaPredicted RBP24.3■■□□□ 1.48
CHD9-206ENST00000562791 FOXD1Q16676 465 aa22.68■■□□□ 1.22
CHD9-206ENST00000562791 PLPPR3Q6T4P5 718 aa22.21■■□□□ 1.15
CHD9-206ENST00000562791 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
CHD9-206ENST00000562791 ADRA2BP18089 450 aa21.5■■□□□ 1.03
CHD9-206ENST00000562791 PIAS4Q8N2W9 510 aaPredicted RBP21.27■■□□□ 1
CHD9-206ENST00000562791 MSH5O43196 834 aa20.97■□□□□ 0.95
CHD9-206ENST00000562791 POTEDQ86YR6 584 aa19.83■□□□□ 0.77
CHD9-206ENST00000562791 MAPK8IP2Q13387 824 aaPredicted RBP19.63■□□□□ 0.73
CHD9-206ENST00000562791 PPP4R3CPQ6ZMV5 832 aa19.56■□□□□ 0.72
CHD9-206ENST00000562791 SCAF1Q9H7N4 1312 aaKnown RBP19.52■□□□□ 0.72
CHD9-206ENST00000562791 DMRT2Q9Y5R5 561 aa19.38■□□□□ 0.69
CHD9-206ENST00000562791 CNKSR2Q8WXI2 1034 aa19.06■□□□□ 0.64
CHD9-206ENST00000562791 NCBP3Q53F19 620 aaKnown RBP18.85■□□□□ 0.61
CHD9-206ENST00000562791 HOXD11P31277 338 aaPredicted RBP18.83■□□□□ 0.6
CHD9-206ENST00000562791 RNF216Q9NWF9 866 aaPredicted RBP18.78■□□□□ 0.6
CHD9-206ENST00000562791 KCNA4P22459 653 aa18.73■□□□□ 0.59
CHD9-206ENST00000562791 NPM3O75607 178 aaKnown RBP18.69■□□□□ 0.58
CHD9-206ENST00000562791 DCAF8L1A6NGE4 600 aa18.55■□□□□ 0.56
CHD9-206ENST00000562791 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
CHD9-206ENST00000562791 RNF39Q9H2S5 420 aa17.98■□□□□ 0.47
CHD9-206ENST00000562791 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.46
CHD9-206ENST00000562791 SLC4A2P04920 1241 aa17.76■□□□□ 0.43
CHD9-206ENST00000562791 CACNB1Q02641 598 aaPredicted RBP17.75■□□□□ 0.43
CHD9-206ENST00000562791 SLC4A1APQ9BWU0 796 aaKnown RBP17.71■□□□□ 0.43
CHD9-206ENST00000562791 C1QBPQ07021 282 aaKnown RBP17.7■□□□□ 0.42
CHD9-206ENST00000562791 U3KPZ7 1027 aaPredicted RBP17.65■□□□□ 0.42
CHD9-206ENST00000562791 FOXD4L1Q9NU39 408 aa17.3■□□□□ 0.36
CHD9-206ENST00000562791 ZBTB22O15209 634 aa17.28■□□□□ 0.36
CHD9-206ENST00000562791 SPINK5Q9NQ38 1064 aaPredicted RBP17.28■□□□□ 0.36
CHD9-206ENST00000562791 MYCNP04198 464 aaPredicted RBP17.23■□□□□ 0.35
CHD9-206ENST00000562791 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.16■□□□□ 0.34
CHD9-206ENST00000562791 CAPN15O75808 1086 aa17.16■□□□□ 0.34
CHD9-206ENST00000562791 HNRNPUL2Q1KMD3 747 aaKnown RBP17.16■□□□□ 0.34
CHD9-206ENST00000562791 SAMD1Q6SPF0 538 aaPredicted RBP17.12■□□□□ 0.33
CHD9-206ENST00000562791 APLP2Q06481 763 aa17.05■□□□□ 0.32
CHD9-206ENST00000562791 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
CHD9-206ENST00000562791 DSG3P32926 999 aa17■□□□□ 0.31
CHD9-206ENST00000562791 ZNF219Q9P2Y4 722 aaPredicted RBP16.95■□□□□ 0.3
CHD9-206ENST00000562791 ATF5Q9Y2D1 282 aaPredicted RBP16.89■□□□□ 0.29
CHD9-206ENST00000562791 ABCB7O75027 752 aa16.86■□□□□ 0.29
CHD9-206ENST00000562791 EHMT2Q96KQ7 1210 aa16.83■□□□□ 0.28
CHD9-206ENST00000562791 CSRNP3Q8WYN3 585 aa16.82■□□□□ 0.28
CHD9-206ENST00000562791 ATXN8OSP0DMR3 200 aa16.66■□□□□ 0.26
CHD9-206ENST00000562791 POLA2Q14181 598 aa16.64■□□□□ 0.25
CHD9-206ENST00000562791 ZBTB12Q9Y330 459 aaPredicted RBP16.26■□□□□ 0.19
CHD9-206ENST00000562791 OSCARQ8IYS5 282 aa16.15■□□□□ 0.18
CHD9-206ENST00000562791 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
CHD9-206ENST00000562791 RBM42Q9BTD8 480 aaKnown RBP16.12■□□□□ 0.17
CHD9-206ENST00000562791 FBLN2P98095 1184 aa16.07■□□□□ 0.16
CHD9-206ENST00000562791 AKT1S1Q96B36 256 aa15.87■□□□□ 0.13
CHD9-206ENST00000562791 SPDYE2BA6NHP3 402 aa15.85■□□□□ 0.13
CHD9-206ENST00000562791 SPDYE6P0CI01 402 aa15.85■□□□□ 0.13
CHD9-206ENST00000562791 SPDYE2Q495Y8 402 aa15.85■□□□□ 0.13
CHD9-206ENST00000562791 REM2Q8IYK8 340 aaPredicted RBP15.75■□□□□ 0.11
CHD9-206ENST00000562791 SSUH2Q9Y2M2 353 aa15.73■□□□□ 0.11
CHD9-206ENST00000562791 ZNF692Q9BU19 519 aaPredicted RBP15.72■□□□□ 0.11
CHD9-206ENST00000562791 CHRDL2Q6WN34 429 aa15.66■□□□□ 0.1
CHD9-206ENST00000562791 PITPNM1O00562 1244 aa15.61■□□□□ 0.09
CHD9-206ENST00000562791 POTEHQ6S545 545 aa15.6■□□□□ 0.09
CHD9-206ENST00000562791 PABPN1Q86U42 306 aaKnown RBP eCLIP15.54■□□□□ 0.08
CHD9-206ENST00000562791 SPDYE4A6NLX3 237 aa15.51■□□□□ 0.07
CHD9-206ENST00000562791 SPDYE1Q8NFV5 336 aaPredicted RBP15.45■□□□□ 0.06
CHD9-206ENST00000562791 CLEC11AQ9Y240 323 aa15.44■□□□□ 0.06
CHD9-206ENST00000562791 PIP4P2Q8N4L2 257 aa15.41■□□□□ 0.06
CHD9-206ENST00000562791 FXR2P51116 673 aaKnown RBP eCLIP15.37■□□□□ 0.05
CHD9-206ENST00000562791 PROM2Q8N271 834 aa15.24■□□□□ 0.03
CHD9-206ENST00000562791 PRR29P0C7W0 189 aa15.22■□□□□ 0.03
CHD9-206ENST00000562791 FKBP8Q14318 412 aa15.21■□□□□ 0.03
CHD9-206ENST00000562791 PRKAR2AP13861 404 aaKnown RBP15.19■□□□□ 0.02
CHD9-206ENST00000562791 CHADLQ6NUI6 762 aa15.15■□□□□ 0.02
CHD9-206ENST00000562791 STAG3Q9UJ98 1225 aa15.12■□□□□ 0.01
CHD9-206ENST00000562791 CREBZFQ9NS37 354 aa15□□□□□ -0.01
CHD9-206ENST00000562791 HAX1O00165 279 aa14.96□□□□□ -0.01
CHD9-206ENST00000562791 FARP1Q9Y4F1 1045 aaPredicted RBP14.92□□□□□ -0.02
CHD9-206ENST00000562791 EVX2Q03828 476 aa14.91□□□□□ -0.02
CHD9-206ENST00000562791 C19orf67A6NJJ6 358 aa14.85□□□□□ -0.03
CHD9-206ENST00000562791 MNX1P50219 401 aaPredicted RBP14.82□□□□□ -0.04
CHD9-206ENST00000562791 SP7Q8TDD2 431 aaPredicted RBP14.82□□□□□ -0.04
CHD9-206ENST00000562791 CD44P16070 742 aaKnown RBP14.73□□□□□ -0.05
CHD9-206ENST00000562791 MIER1Q8N108 512 aa14.71□□□□□ -0.05
CHD9-206ENST00000562791 PLCD3Q8N3E9 789 aa14.66□□□□□ -0.06
CHD9-206ENST00000562791 FBXO3Q9UK99 471 aa14.66□□□□□ -0.06
CHD9-206ENST00000562791 NPM1P06748 294 aaKnown RBP eCLIP14.64□□□□□ -0.07
CHD9-206ENST00000562791 PLEKHG5O94827 1062 aa14.61□□□□□ -0.07
CHD9-206ENST00000562791 ZRANB1Q9UGI0 708 aa14.59□□□□□ -0.07
CHD9-206ENST00000562791 VASPP50552 380 aaPredicted RBP14.57□□□□□ -0.08
CHD9-206ENST00000562791 GABBR2O75899 941 aa14.53□□□□□ -0.08
CHD9-206ENST00000562791 ZNF579Q8NAF0 562 aaKnown RBP14.53□□□□□ -0.08
CHD9-206ENST00000562791 PAK3O75914 559 aaPredicted RBP14.48□□□□□ -0.09
CHD9-206ENST00000562791 RASEFQ8IZ41 740 aa14.48□□□□□ -0.09
CHD9-206ENST00000562791 TSPYL2Q9H2G4 693 aaPredicted RBP14.47□□□□□ -0.09
CHD9-206ENST00000562791 PHF12Q96QT6 1004 aa14.46□□□□□ -0.09
CHD9-206ENST00000562791 ZBTB47Q9UFB7 747 aaPredicted RBP14.46□□□□□ -0.09
CHD9-206ENST00000562791 NUBP1P53384 320 aa14.44□□□□□ -0.1
CHD9-206ENST00000562791 CCDC61Q9Y6R9 512 aa14.4□□□□□ -0.1
CHD9-206ENST00000562791 IFNLR1Q8IU57 520 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 339.2 ms