RNA–Protein interactions for RNA: ENST00000562540.1

DENND4A-205, Transcript of DENN domain containing 4A, humanhuman

TSL 2

Gene DENND4A, Length 629 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND4A-205ENST00000562540 AEBP2Q6ZN18 517 aaPredicted RBP26.25■■□□□ 1.79
DENND4A-205ENST00000562540 CHIC1Q5VXU3 224 aa24.44■■□□□ 1.5
DENND4A-205ENST00000562540 SENP3Q9H4L4 574 aaPredicted RBP22.36■■□□□ 1.17
DENND4A-205ENST00000562540 PHF23Q9BUL5 403 aaPredicted RBP22.04■■□□□ 1.12
DENND4A-205ENST00000562540 FOXD1Q16676 465 aa20.97■□□□□ 0.95
DENND4A-205ENST00000562540 POTEDQ86YR6 584 aa20.07■□□□□ 0.8
DENND4A-205ENST00000562540 MSH5O43196 834 aa19.72■□□□□ 0.75
DENND4A-205ENST00000562540 PIAS4Q8N2W9 510 aaPredicted RBP19.46■□□□□ 0.71
DENND4A-205ENST00000562540 PLPPR3Q6T4P5 718 aa19.29■□□□□ 0.68
DENND4A-205ENST00000562540 PPP6R1Q9UPN7 881 aa19.29■□□□□ 0.68
DENND4A-205ENST00000562540 ADRA2BP18089 450 aa19.19■□□□□ 0.66
DENND4A-205ENST00000562540 MAPK8IP2Q13387 824 aaPredicted RBP17.77■□□□□ 0.44
DENND4A-205ENST00000562540 DMRT2Q9Y5R5 561 aa17.69■□□□□ 0.42
DENND4A-205ENST00000562540 SCAF1Q9H7N4 1312 aaKnown RBP17.45■□□□□ 0.38
DENND4A-205ENST00000562540 CACNB1Q02641 598 aaPredicted RBP17.21■□□□□ 0.35
DENND4A-205ENST00000562540 DCAF8L1A6NGE4 600 aa16.99■□□□□ 0.31
DENND4A-205ENST00000562540 PPP4R3CPQ6ZMV5 832 aa16.89■□□□□ 0.29
DENND4A-205ENST00000562540 HOXD11P31277 338 aaPredicted RBP16.86■□□□□ 0.29
DENND4A-205ENST00000562540 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
DENND4A-205ENST00000562540 CNKSR2Q8WXI2 1034 aa16.63■□□□□ 0.25
DENND4A-205ENST00000562540 RNF216Q9NWF9 866 aaPredicted RBP16.61■□□□□ 0.25
DENND4A-205ENST00000562540 C1QBPQ07021 282 aaKnown RBP16.51■□□□□ 0.23
DENND4A-205ENST00000562540 DNAJC5BQ9UF47 199 aa16.3■□□□□ 0.2
DENND4A-205ENST00000562540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.05■□□□□ 0.16
DENND4A-205ENST00000562540 NCBP3Q53F19 620 aaKnown RBP16.03■□□□□ 0.16
DENND4A-205ENST00000562540 NPM3O75607 178 aaKnown RBP15.89■□□□□ 0.13
DENND4A-205ENST00000562540 U3KPZ7 1027 aaPredicted RBP15.72■□□□□ 0.11
DENND4A-205ENST00000562540 SPINK5Q9NQ38 1064 aaPredicted RBP15.64■□□□□ 0.09
DENND4A-205ENST00000562540 POTEHQ6S545 545 aa15.62■□□□□ 0.09
DENND4A-205ENST00000562540 DSG3P32926 999 aa15.61■□□□□ 0.09
DENND4A-205ENST00000562540 CAPN15O75808 1086 aa15.59■□□□□ 0.09
DENND4A-205ENST00000562540 SLC4A2P04920 1241 aa15.31■□□□□ 0.04
DENND4A-205ENST00000562540 TRHP20396 242 aaPredicted RBP15.24■□□□□ 0.03
DENND4A-205ENST00000562540 ABCB7O75027 752 aa15.23■□□□□ 0.03
DENND4A-205ENST00000562540 KCNA4P22459 653 aa15.2■□□□□ 0.02
DENND4A-205ENST00000562540 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
DENND4A-205ENST00000562540 APLP2Q06481 763 aa15.1■□□□□ 0.01
DENND4A-205ENST00000562540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15□□□□□ -0.01
DENND4A-205ENST00000562540 HNRNPUL2Q1KMD3 747 aaKnown RBP15□□□□□ -0.01
DENND4A-205ENST00000562540 SAMD1Q6SPF0 538 aaPredicted RBP14.93□□□□□ -0.02
DENND4A-205ENST00000562540 RBM42Q9BTD8 480 aaKnown RBP14.84□□□□□ -0.03
DENND4A-205ENST00000562540 CHRDL2Q6WN34 429 aa14.74□□□□□ -0.05
DENND4A-205ENST00000562540 POLA2Q14181 598 aa14.72□□□□□ -0.05
DENND4A-205ENST00000562540 MYCNP04198 464 aaPredicted RBP14.66□□□□□ -0.06
DENND4A-205ENST00000562540 ATF5Q9Y2D1 282 aaPredicted RBP14.45□□□□□ -0.1
DENND4A-205ENST00000562540 AKT1S1Q96B36 256 aa14.43□□□□□ -0.1
DENND4A-205ENST00000562540 SP7Q8TDD2 431 aaPredicted RBP14.42□□□□□ -0.1
DENND4A-205ENST00000562540 REM2Q8IYK8 340 aaPredicted RBP14.33□□□□□ -0.12
DENND4A-205ENST00000562540 PIP4P2Q8N4L2 257 aa14.32□□□□□ -0.12
DENND4A-205ENST00000562540 ZBTB12Q9Y330 459 aaPredicted RBP14.32□□□□□ -0.12
DENND4A-205ENST00000562540 OSCARQ8IYS5 282 aa14.3□□□□□ -0.12
DENND4A-205ENST00000562540 FOXD4L1Q9NU39 408 aa14.28□□□□□ -0.12
DENND4A-205ENST00000562540 SLC4A1APQ9BWU0 796 aaKnown RBP14.22□□□□□ -0.13
DENND4A-205ENST00000562540 PITPNM1O00562 1244 aa14.2□□□□□ -0.14
DENND4A-205ENST00000562540 HAX1O00165 279 aa14.15□□□□□ -0.14
DENND4A-205ENST00000562540 FXR2P51116 673 aaKnown RBP eCLIP14.14□□□□□ -0.15
DENND4A-205ENST00000562540 EVX2Q03828 476 aa14.02□□□□□ -0.17
DENND4A-205ENST00000562540 ZBTB22O15209 634 aa14.01□□□□□ -0.17
DENND4A-205ENST00000562540 SPDYE2BA6NHP3 402 aa13.87□□□□□ -0.19
DENND4A-205ENST00000562540 SPDYE6P0CI01 402 aa13.87□□□□□ -0.19
DENND4A-205ENST00000562540 SPDYE2Q495Y8 402 aa13.87□□□□□ -0.19
DENND4A-205ENST00000562540 ATXN8OSP0DMR3 200 aa13.84□□□□□ -0.19
DENND4A-205ENST00000562540 PRKAR2AP13861 404 aaKnown RBP13.81□□□□□ -0.2
DENND4A-205ENST00000562540 FBLN2P98095 1184 aa13.8□□□□□ -0.2
DENND4A-205ENST00000562540 CLEC11AQ9Y240 323 aa13.77□□□□□ -0.21
DENND4A-205ENST00000562540 MKRN4PQ13434 485 aaPredicted RBP13.75□□□□□ -0.21
DENND4A-205ENST00000562540 SPDYE1Q8NFV5 336 aaPredicted RBP13.73□□□□□ -0.21
DENND4A-205ENST00000562540 C19orf67A6NJJ6 358 aa13.72□□□□□ -0.21
DENND4A-205ENST00000562540 SSUH2Q9Y2M2 353 aa13.67□□□□□ -0.22
DENND4A-205ENST00000562540 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
DENND4A-205ENST00000562540 GABBR2O75899 941 aa13.63□□□□□ -0.23
DENND4A-205ENST00000562540 CHADLQ6NUI6 762 aa13.6□□□□□ -0.23
DENND4A-205ENST00000562540 LHX8Q68G74 356 aa13.52□□□□□ -0.25
DENND4A-205ENST00000562540 PABPN1Q86U42 306 aaKnown RBP eCLIP13.46□□□□□ -0.25
DENND4A-205ENST00000562540 PRR29P0C7W0 189 aa13.45□□□□□ -0.26
DENND4A-205ENST00000562540 POTEIP0CG38 1075 aa13.38□□□□□ -0.27
DENND4A-205ENST00000562540 CD44P16070 742 aaKnown RBP13.34□□□□□ -0.27
DENND4A-205ENST00000562540 FARP1Q9Y4F1 1045 aaPredicted RBP13.31□□□□□ -0.28
DENND4A-205ENST00000562540 CLCN6P51797 869 aa13.15□□□□□ -0.3
DENND4A-205ENST00000562540 CSRNP3Q8WYN3 585 aa13.14□□□□□ -0.31
DENND4A-205ENST00000562540 DCBLD2Q96PD2 775 aa13.12□□□□□ -0.31
DENND4A-205ENST00000562540 ZNF579Q8NAF0 562 aaKnown RBP13.11□□□□□ -0.31
DENND4A-205ENST00000562540 ZRANB1Q9UGI0 708 aa13.09□□□□□ -0.31
DENND4A-205ENST00000562540 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
DENND4A-205ENST00000562540 GALR2O43603 387 aaPredicted RBP13.03□□□□□ -0.32
DENND4A-205ENST00000562540 PLSCR2Q9NRY7 297 aa13.03□□□□□ -0.32
DENND4A-205ENST00000562540 EHMT2Q96KQ7 1210 aa13.02□□□□□ -0.33
DENND4A-205ENST00000562540 OTUD5Q96G74 571 aa12.95□□□□□ -0.34
DENND4A-205ENST00000562540 POTEB2H3BUK9 544 aa12.93□□□□□ -0.34
DENND4A-205ENST00000562540 STAG3Q9UJ98 1225 aa12.92□□□□□ -0.34
DENND4A-205ENST00000562540 PHF12Q96QT6 1004 aa12.9□□□□□ -0.34
DENND4A-205ENST00000562540 PELP1Q8IZL8 1130 aaKnown RBP12.83□□□□□ -0.36
DENND4A-205ENST00000562540 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
DENND4A-205ENST00000562540 SPDYE4A6NLX3 237 aa12.81□□□□□ -0.36
DENND4A-205ENST00000562540 MNX1P50219 401 aaPredicted RBP12.8□□□□□ -0.36
DENND4A-205ENST00000562540 POTEMA6NI47 508 aa12.76□□□□□ -0.37
DENND4A-205ENST00000562540 NPM1P06748 294 aaKnown RBP eCLIP12.73□□□□□ -0.37
DENND4A-205ENST00000562540 POTEGQ6S5H5 508 aa12.71□□□□□ -0.37
DENND4A-205ENST00000562540 MS4A3Q96HJ5 214 aa12.7□□□□□ -0.38
DENND4A-205ENST00000562540 ASTLQ6HA08 431 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 208.6 ms