RNA–Protein interactions for RNA: ENST00000561930.1

PDXDC1-206, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 4

Gene PDXDC1, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-206ENST00000561930 AEBP2Q6ZN18 517 aaPredicted RBP29.56■■■□□ 2.32
PDXDC1-206ENST00000561930 CHIC1Q5VXU3 224 aa28.37■■■□□ 2.13
PDXDC1-206ENST00000561930 SENP3Q9H4L4 574 aaPredicted RBP25.33■■□□□ 1.65
PDXDC1-206ENST00000561930 PHF23Q9BUL5 403 aaPredicted RBP25■■□□□ 1.59
PDXDC1-206ENST00000561930 FOXD1Q16676 465 aa23.49■■□□□ 1.35
PDXDC1-206ENST00000561930 PLPPR3Q6T4P5 718 aa22.86■■□□□ 1.25
PDXDC1-206ENST00000561930 ADRA2BP18089 450 aa22.13■■□□□ 1.13
PDXDC1-206ENST00000561930 PIAS4Q8N2W9 510 aaPredicted RBP22.12■■□□□ 1.13
PDXDC1-206ENST00000561930 PPP6R1Q9UPN7 881 aa22.11■■□□□ 1.13
PDXDC1-206ENST00000561930 MSH5O43196 834 aa22■■□□□ 1.11
PDXDC1-206ENST00000561930 POTEDQ86YR6 584 aa21■□□□□ 0.95
PDXDC1-206ENST00000561930 SCAF1Q9H7N4 1312 aaKnown RBP20.39■□□□□ 0.85
PDXDC1-206ENST00000561930 MAPK8IP2Q13387 824 aaPredicted RBP20.23■□□□□ 0.83
PDXDC1-206ENST00000561930 DMRT2Q9Y5R5 561 aa20.06■□□□□ 0.8
PDXDC1-206ENST00000561930 PPP4R3CPQ6ZMV5 832 aa20.04■□□□□ 0.8
PDXDC1-206ENST00000561930 CNKSR2Q8WXI2 1034 aa19.63■□□□□ 0.73
PDXDC1-206ENST00000561930 NCBP3Q53F19 620 aaKnown RBP19.45■□□□□ 0.7
PDXDC1-206ENST00000561930 DCAF8L1A6NGE4 600 aa19.44■□□□□ 0.7
PDXDC1-206ENST00000561930 HOXD11P31277 338 aaPredicted RBP19.38■□□□□ 0.69
PDXDC1-206ENST00000561930 RNF216Q9NWF9 866 aaPredicted RBP19.36■□□□□ 0.69
PDXDC1-206ENST00000561930 NPM3O75607 178 aaKnown RBP19.02■□□□□ 0.64
PDXDC1-206ENST00000561930 KCNA4P22459 653 aa18.87■□□□□ 0.61
PDXDC1-206ENST00000561930 CACNB1Q02641 598 aaPredicted RBP18.8■□□□□ 0.6
PDXDC1-206ENST00000561930 RNF39Q9H2S5 420 aa18.71■□□□□ 0.59
PDXDC1-206ENST00000561930 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
PDXDC1-206ENST00000561930 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.65■□□□□ 0.58
PDXDC1-206ENST00000561930 C1QBPQ07021 282 aaKnown RBP18.52■□□□□ 0.56
PDXDC1-206ENST00000561930 U3KPZ7 1027 aaPredicted RBP18.12■□□□□ 0.49
PDXDC1-206ENST00000561930 SLC4A2P04920 1241 aa18.04■□□□□ 0.48
PDXDC1-206ENST00000561930 SLC4A1APQ9BWU0 796 aaKnown RBP17.94■□□□□ 0.46
PDXDC1-206ENST00000561930 CAPN15O75808 1086 aa17.91■□□□□ 0.46
PDXDC1-206ENST00000561930 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.86■□□□□ 0.45
PDXDC1-206ENST00000561930 HNRNPUL2Q1KMD3 747 aaKnown RBP17.86■□□□□ 0.45
PDXDC1-206ENST00000561930 APLP2Q06481 763 aa17.85■□□□□ 0.45
PDXDC1-206ENST00000561930 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
PDXDC1-206ENST00000561930 SAMD1Q6SPF0 538 aaPredicted RBP17.73■□□□□ 0.43
PDXDC1-206ENST00000561930 TRHP20396 242 aaPredicted RBP17.68■□□□□ 0.42
PDXDC1-206ENST00000561930 MYCNP04198 464 aaPredicted RBP17.65■□□□□ 0.42
PDXDC1-206ENST00000561930 DSG3P32926 999 aa17.62■□□□□ 0.41
PDXDC1-206ENST00000561930 ZNF219Q9P2Y4 722 aaPredicted RBP17.62■□□□□ 0.41
PDXDC1-206ENST00000561930 FOXD4L1Q9NU39 408 aa17.58■□□□□ 0.4
PDXDC1-206ENST00000561930 ABCB7O75027 752 aa17.47■□□□□ 0.39
PDXDC1-206ENST00000561930 ZBTB22O15209 634 aa17.25■□□□□ 0.35
PDXDC1-206ENST00000561930 POLA2Q14181 598 aa17.2■□□□□ 0.34
PDXDC1-206ENST00000561930 ATF5Q9Y2D1 282 aaPredicted RBP17.12■□□□□ 0.33
PDXDC1-206ENST00000561930 ATXN8OSP0DMR3 200 aa17■□□□□ 0.31
PDXDC1-206ENST00000561930 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
PDXDC1-206ENST00000561930 ZBTB12Q9Y330 459 aaPredicted RBP16.92■□□□□ 0.3
PDXDC1-206ENST00000561930 EHMT2Q96KQ7 1210 aa16.78■□□□□ 0.28
PDXDC1-206ENST00000561930 CSRNP3Q8WYN3 585 aa16.73■□□□□ 0.27
PDXDC1-206ENST00000561930 FBLN2P98095 1184 aa16.64■□□□□ 0.25
PDXDC1-206ENST00000561930 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
PDXDC1-206ENST00000561930 POTEHQ6S545 545 aa16.56■□□□□ 0.24
PDXDC1-206ENST00000561930 AKT1S1Q96B36 256 aa16.52■□□□□ 0.24
PDXDC1-206ENST00000561930 CHRDL2Q6WN34 429 aa16.4■□□□□ 0.22
PDXDC1-206ENST00000561930 SPDYE2BA6NHP3 402 aa16.36■□□□□ 0.21
PDXDC1-206ENST00000561930 SPDYE6P0CI01 402 aa16.36■□□□□ 0.21
PDXDC1-206ENST00000561930 SPDYE2Q495Y8 402 aa16.36■□□□□ 0.21
PDXDC1-206ENST00000561930 REM2Q8IYK8 340 aaPredicted RBP16.35■□□□□ 0.21
PDXDC1-206ENST00000561930 MKRN4PQ13434 485 aaPredicted RBP16.33■□□□□ 0.2
PDXDC1-206ENST00000561930 ZNF692Q9BU19 519 aaPredicted RBP16.26■□□□□ 0.19
PDXDC1-206ENST00000561930 PITPNM1O00562 1244 aa16.15■□□□□ 0.18
PDXDC1-206ENST00000561930 CLEC11AQ9Y240 323 aa16.09■□□□□ 0.17
PDXDC1-206ENST00000561930 SSUH2Q9Y2M2 353 aa16.08■□□□□ 0.16
PDXDC1-206ENST00000561930 SPDYE1Q8NFV5 336 aaPredicted RBP16.07■□□□□ 0.16
PDXDC1-206ENST00000561930 PIP4P2Q8N4L2 257 aa16.02■□□□□ 0.16
PDXDC1-206ENST00000561930 PABPN1Q86U42 306 aaKnown RBP eCLIP16■□□□□ 0.15
PDXDC1-206ENST00000561930 FXR2P51116 673 aaKnown RBP eCLIP15.94■□□□□ 0.14
PDXDC1-206ENST00000561930 PRR29P0C7W0 189 aa15.83■□□□□ 0.12
PDXDC1-206ENST00000561930 SPDYE4A6NLX3 237 aa15.82■□□□□ 0.12
PDXDC1-206ENST00000561930 PRKAR2AP13861 404 aaKnown RBP15.81■□□□□ 0.12
PDXDC1-206ENST00000561930 HAX1O00165 279 aa15.8■□□□□ 0.12
PDXDC1-206ENST00000561930 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
PDXDC1-206ENST00000561930 CHADLQ6NUI6 762 aa15.65■□□□□ 0.1
PDXDC1-206ENST00000561930 SP7Q8TDD2 431 aaPredicted RBP15.63■□□□□ 0.09
PDXDC1-206ENST00000561930 FARP1Q9Y4F1 1045 aaPredicted RBP15.44■□□□□ 0.06
PDXDC1-206ENST00000561930 EVX2Q03828 476 aa15.43■□□□□ 0.06
PDXDC1-206ENST00000561930 C19orf67A6NJJ6 358 aa15.42■□□□□ 0.06
PDXDC1-206ENST00000561930 CREBZFQ9NS37 354 aa15.35■□□□□ 0.05
PDXDC1-206ENST00000561930 CD44P16070 742 aaKnown RBP15.32■□□□□ 0.04
PDXDC1-206ENST00000561930 FKBP8Q14318 412 aa15.28■□□□□ 0.04
PDXDC1-206ENST00000561930 PROM2Q8N271 834 aa15.28■□□□□ 0.04
PDXDC1-206ENST00000561930 NPM1P06748 294 aaKnown RBP eCLIP15.24■□□□□ 0.03
PDXDC1-206ENST00000561930 PLEKHG5O94827 1062 aa15.21■□□□□ 0.03
PDXDC1-206ENST00000561930 PAK3O75914 559 aaPredicted RBP15.19■□□□□ 0.02
PDXDC1-206ENST00000561930 GABBR2O75899 941 aa15.18■□□□□ 0.02
PDXDC1-206ENST00000561930 ZRANB1Q9UGI0 708 aa15.17■□□□□ 0.02
PDXDC1-206ENST00000561930 MIER1Q8N108 512 aa15.15■□□□□ 0.02
PDXDC1-206ENST00000561930 CLCN6P51797 869 aa15.09■□□□□ 0.01
PDXDC1-206ENST00000561930 PLCD3Q8N3E9 789 aa15.07■□□□□ 0
PDXDC1-206ENST00000561930 MNX1P50219 401 aaPredicted RBP15.04■□□□□ -0
PDXDC1-206ENST00000561930 ZNF579Q8NAF0 562 aaKnown RBP15.02■□□□□ -0
PDXDC1-206ENST00000561930 FBXO3Q9UK99 471 aa14.96□□□□□ -0.01
PDXDC1-206ENST00000561930 DCBLD2Q96PD2 775 aa14.95□□□□□ -0.02
PDXDC1-206ENST00000561930 TSPYL2Q9H2G4 693 aaPredicted RBP14.94□□□□□ -0.02
PDXDC1-206ENST00000561930 ZBTB47Q9UFB7 747 aaPredicted RBP14.94□□□□□ -0.02
PDXDC1-206ENST00000561930 PHF12Q96QT6 1004 aa14.91□□□□□ -0.02
PDXDC1-206ENST00000561930 GALR2O43603 387 aaPredicted RBP14.84□□□□□ -0.03
PDXDC1-206ENST00000561930 POTEIP0CG38 1075 aa14.76□□□□□ -0.05
PDXDC1-206ENST00000561930 RASEFQ8IZ41 740 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms