RNA–Protein interactions for RNA: ENST00000561397.1

AP4E1-206, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best)

Gene AP4E1, Length 1,233 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-206ENST00000561397 AEBP2Q6ZN18 517 aaPredicted RBP26.13■■□□□ 1.77
AP4E1-206ENST00000561397 CHIC1Q5VXU3 224 aa25.07■■□□□ 1.6
AP4E1-206ENST00000561397 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
AP4E1-206ENST00000561397 PHF23Q9BUL5 403 aaPredicted RBP22.08■■□□□ 1.13
AP4E1-206ENST00000561397 FOXD1Q16676 465 aa20.64■□□□□ 0.89
AP4E1-206ENST00000561397 PLPPR3Q6T4P5 718 aa20.13■□□□□ 0.81
AP4E1-206ENST00000561397 PPP6R1Q9UPN7 881 aa19.62■□□□□ 0.73
AP4E1-206ENST00000561397 ADRA2BP18089 450 aa19.53■□□□□ 0.72
AP4E1-206ENST00000561397 PIAS4Q8N2W9 510 aaPredicted RBP19.3■□□□□ 0.68
AP4E1-206ENST00000561397 MSH5O43196 834 aa19.09■□□□□ 0.65
AP4E1-206ENST00000561397 POTEDQ86YR6 584 aa18.17■□□□□ 0.5
AP4E1-206ENST00000561397 MAPK8IP2Q13387 824 aaPredicted RBP17.86■□□□□ 0.45
AP4E1-206ENST00000561397 PPP4R3CPQ6ZMV5 832 aa17.73■□□□□ 0.43
AP4E1-206ENST00000561397 SCAF1Q9H7N4 1312 aaKnown RBP17.72■□□□□ 0.43
AP4E1-206ENST00000561397 DMRT2Q9Y5R5 561 aa17.63■□□□□ 0.41
AP4E1-206ENST00000561397 CNKSR2Q8WXI2 1034 aa17.29■□□□□ 0.36
AP4E1-206ENST00000561397 HOXD11P31277 338 aaPredicted RBP17.12■□□□□ 0.33
AP4E1-206ENST00000561397 NCBP3Q53F19 620 aaKnown RBP17.06■□□□□ 0.32
AP4E1-206ENST00000561397 RNF216Q9NWF9 866 aaPredicted RBP17.06■□□□□ 0.32
AP4E1-206ENST00000561397 NPM3O75607 178 aaKnown RBP16.93■□□□□ 0.3
AP4E1-206ENST00000561397 KCNA4P22459 653 aa16.92■□□□□ 0.3
AP4E1-206ENST00000561397 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
AP4E1-206ENST00000561397 DNAJC5BQ9UF47 199 aa16.5■□□□□ 0.23
AP4E1-206ENST00000561397 RNF39Q9H2S5 420 aa16.39■□□□□ 0.21
AP4E1-206ENST00000561397 CACNB1Q02641 598 aaPredicted RBP16.24■□□□□ 0.19
AP4E1-206ENST00000561397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.23■□□□□ 0.19
AP4E1-206ENST00000561397 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
AP4E1-206ENST00000561397 C1QBPQ07021 282 aaKnown RBP16.12■□□□□ 0.17
AP4E1-206ENST00000561397 U3KPZ7 1027 aaPredicted RBP16.02■□□□□ 0.16
AP4E1-206ENST00000561397 SLC4A1APQ9BWU0 796 aaKnown RBP15.97■□□□□ 0.15
AP4E1-206ENST00000561397 EHMT2Q96KQ7 1210 aa15.74■□□□□ 0.11
AP4E1-206ENST00000561397 SPINK5Q9NQ38 1064 aaPredicted RBP15.69■□□□□ 0.1
AP4E1-206ENST00000561397 ZBTB22O15209 634 aa15.62■□□□□ 0.09
AP4E1-206ENST00000561397 FOXD4L1Q9NU39 408 aa15.62■□□□□ 0.09
AP4E1-206ENST00000561397 MYCNP04198 464 aaPredicted RBP15.59■□□□□ 0.09
AP4E1-206ENST00000561397 CAPN15O75808 1086 aa15.56■□□□□ 0.08
AP4E1-206ENST00000561397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
AP4E1-206ENST00000561397 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
AP4E1-206ENST00000561397 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
AP4E1-206ENST00000561397 SAMD1Q6SPF0 538 aaPredicted RBP15.51■□□□□ 0.07
AP4E1-206ENST00000561397 DSG3P32926 999 aa15.47■□□□□ 0.07
AP4E1-206ENST00000561397 APLP2Q06481 763 aa15.44■□□□□ 0.06
AP4E1-206ENST00000561397 TRHP20396 242 aaPredicted RBP15.41■□□□□ 0.06
AP4E1-206ENST00000561397 ZNF219Q9P2Y4 722 aaPredicted RBP15.36■□□□□ 0.05
AP4E1-206ENST00000561397 ATF5Q9Y2D1 282 aaPredicted RBP15.31■□□□□ 0.04
AP4E1-206ENST00000561397 ABCB7O75027 752 aa15.27■□□□□ 0.04
AP4E1-206ENST00000561397 ATXN8OSP0DMR3 200 aa15.1■□□□□ 0.01
AP4E1-206ENST00000561397 POLA2Q14181 598 aa15.1■□□□□ 0.01
AP4E1-206ENST00000561397 ZBTB12Q9Y330 459 aaPredicted RBP14.73□□□□□ -0.05
AP4E1-206ENST00000561397 RBM42Q9BTD8 480 aaKnown RBP14.64□□□□□ -0.07
AP4E1-206ENST00000561397 MKRN4PQ13434 485 aaPredicted RBP14.62□□□□□ -0.07
AP4E1-206ENST00000561397 OSCARQ8IYS5 282 aa14.61□□□□□ -0.07
AP4E1-206ENST00000561397 FBLN2P98095 1184 aa14.53□□□□□ -0.08
AP4E1-206ENST00000561397 AKT1S1Q96B36 256 aa14.43□□□□□ -0.1
AP4E1-206ENST00000561397 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
AP4E1-206ENST00000561397 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
AP4E1-206ENST00000561397 SPDYE2Q495Y8 402 aa14.36□□□□□ -0.11
AP4E1-206ENST00000561397 REM2Q8IYK8 340 aaPredicted RBP14.33□□□□□ -0.12
AP4E1-206ENST00000561397 POTEHQ6S545 545 aa14.3□□□□□ -0.12
AP4E1-206ENST00000561397 SSUH2Q9Y2M2 353 aa14.26□□□□□ -0.13
AP4E1-206ENST00000561397 CHRDL2Q6WN34 429 aa14.25□□□□□ -0.13
AP4E1-206ENST00000561397 ZNF692Q9BU19 519 aaPredicted RBP14.24□□□□□ -0.13
AP4E1-206ENST00000561397 PITPNM1O00562 1244 aa14.17□□□□□ -0.14
AP4E1-206ENST00000561397 PABPN1Q86U42 306 aaKnown RBP eCLIP14.07□□□□□ -0.16
AP4E1-206ENST00000561397 SPDYE4A6NLX3 237 aa14.01□□□□□ -0.17
AP4E1-206ENST00000561397 PIP4P2Q8N4L2 257 aa14.01□□□□□ -0.17
AP4E1-206ENST00000561397 SPDYE1Q8NFV5 336 aaPredicted RBP14.01□□□□□ -0.17
AP4E1-206ENST00000561397 FXR2P51116 673 aaKnown RBP eCLIP13.99□□□□□ -0.17
AP4E1-206ENST00000561397 CLEC11AQ9Y240 323 aa13.97□□□□□ -0.17
AP4E1-206ENST00000561397 FKBP8Q14318 412 aa13.95□□□□□ -0.18
AP4E1-206ENST00000561397 PROM2Q8N271 834 aa13.8□□□□□ -0.2
AP4E1-206ENST00000561397 PRR29P0C7W0 189 aa13.79□□□□□ -0.2
AP4E1-206ENST00000561397 PRKAR2AP13861 404 aaKnown RBP13.78□□□□□ -0.2
AP4E1-206ENST00000561397 CHADLQ6NUI6 762 aa13.73□□□□□ -0.21
AP4E1-206ENST00000561397 STAG3Q9UJ98 1225 aa13.69□□□□□ -0.22
AP4E1-206ENST00000561397 HAX1O00165 279 aa13.64□□□□□ -0.23
AP4E1-206ENST00000561397 CREBZFQ9NS37 354 aa13.61□□□□□ -0.23
AP4E1-206ENST00000561397 EVX2Q03828 476 aa13.6□□□□□ -0.23
AP4E1-206ENST00000561397 FARP1Q9Y4F1 1045 aaPredicted RBP13.55□□□□□ -0.24
AP4E1-206ENST00000561397 C19orf67A6NJJ6 358 aa13.53□□□□□ -0.24
AP4E1-206ENST00000561397 SP7Q8TDD2 431 aaPredicted RBP13.51□□□□□ -0.25
AP4E1-206ENST00000561397 MNX1P50219 401 aaPredicted RBP13.46□□□□□ -0.25
AP4E1-206ENST00000561397 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
AP4E1-206ENST00000561397 CD44P16070 742 aaKnown RBP13.35□□□□□ -0.27
AP4E1-206ENST00000561397 MIER1Q8N108 512 aa13.3□□□□□ -0.28
AP4E1-206ENST00000561397 NPM1P06748 294 aaKnown RBP eCLIP13.25□□□□□ -0.29
AP4E1-206ENST00000561397 GABBR2O75899 941 aa13.24□□□□□ -0.29
AP4E1-206ENST00000561397 VASPP50552 380 aaPredicted RBP13.23□□□□□ -0.29
AP4E1-206ENST00000561397 ZRANB1Q9UGI0 708 aa13.22□□□□□ -0.29
AP4E1-206ENST00000561397 AMER1Q5JTC6 1135 aaPredicted RBP13.21□□□□□ -0.29
AP4E1-206ENST00000561397 PLCD3Q8N3E9 789 aa13.21□□□□□ -0.29
AP4E1-206ENST00000561397 RTN4Q9NQC3 1192 aaKnown RBP13.21□□□□□ -0.29
AP4E1-206ENST00000561397 ZNF579Q8NAF0 562 aaKnown RBP13.19□□□□□ -0.3
AP4E1-206ENST00000561397 PLEKHG5O94827 1062 aa13.16□□□□□ -0.3
AP4E1-206ENST00000561397 RASEFQ8IZ41 740 aa13.11□□□□□ -0.31
AP4E1-206ENST00000561397 PAK3O75914 559 aaPredicted RBP13.1□□□□□ -0.31
AP4E1-206ENST00000561397 IFNLR1Q8IU57 520 aaPredicted RBP13.1□□□□□ -0.31
AP4E1-206ENST00000561397 PHF12Q96QT6 1004 aa13.1□□□□□ -0.31
AP4E1-206ENST00000561397 NUBP1P53384 320 aa13.08□□□□□ -0.32
AP4E1-206ENST00000561397 TSPYL2Q9H2G4 693 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms