RNA–Protein interactions for RNA: ENST00000561377.1

HMBOX1-216, Transcript of homeobox containing 1, humanhuman

TSL 5

Gene HMBOX1, Length 307 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-216ENST00000561377 AEBP2Q6ZN18 517 aaPredicted RBP32.14■■■□□ 2.74
HMBOX1-216ENST00000561377 CHIC1Q5VXU3 224 aa30.95■■■□□ 2.55
HMBOX1-216ENST00000561377 SENP3Q9H4L4 574 aaPredicted RBP27.46■■□□□ 1.99
HMBOX1-216ENST00000561377 PHF23Q9BUL5 403 aaPredicted RBP27.11■■□□□ 1.93
HMBOX1-216ENST00000561377 FOXD1Q16676 465 aa25.48■■□□□ 1.67
HMBOX1-216ENST00000561377 PLPPR3Q6T4P5 718 aa24.93■■□□□ 1.58
HMBOX1-216ENST00000561377 PPP6R1Q9UPN7 881 aa24.07■■□□□ 1.44
HMBOX1-216ENST00000561377 ADRA2BP18089 450 aa24.04■■□□□ 1.44
HMBOX1-216ENST00000561377 PIAS4Q8N2W9 510 aaPredicted RBP23.94■■□□□ 1.42
HMBOX1-216ENST00000561377 MSH5O43196 834 aa23.78■■□□□ 1.4
HMBOX1-216ENST00000561377 POTEDQ86YR6 584 aa22.51■■□□□ 1.19
HMBOX1-216ENST00000561377 SCAF1Q9H7N4 1312 aaKnown RBP22.1■■□□□ 1.13
HMBOX1-216ENST00000561377 MAPK8IP2Q13387 824 aaPredicted RBP21.95■■□□□ 1.1
HMBOX1-216ENST00000561377 PPP4R3CPQ6ZMV5 832 aa21.88■■□□□ 1.09
HMBOX1-216ENST00000561377 DMRT2Q9Y5R5 561 aa21.81■■□□□ 1.08
HMBOX1-216ENST00000561377 CNKSR2Q8WXI2 1034 aa21.41■■□□□ 1.02
HMBOX1-216ENST00000561377 NCBP3Q53F19 620 aaKnown RBP21.21■□□□□ 0.99
HMBOX1-216ENST00000561377 HOXD11P31277 338 aaPredicted RBP21.15■□□□□ 0.98
HMBOX1-216ENST00000561377 RNF216Q9NWF9 866 aaPredicted RBP21.11■□□□□ 0.97
HMBOX1-216ENST00000561377 DCAF8L1A6NGE4 600 aa20.9■□□□□ 0.94
HMBOX1-216ENST00000561377 NPM3O75607 178 aaKnown RBP20.82■□□□□ 0.92
HMBOX1-216ENST00000561377 KCNA4P22459 653 aa20.75■□□□□ 0.91
HMBOX1-216ENST00000561377 DNAJC5BQ9UF47 199 aa20.39■□□□□ 0.85
HMBOX1-216ENST00000561377 RNF39Q9H2S5 420 aa20.27■□□□□ 0.84
HMBOX1-216ENST00000561377 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.18■□□□□ 0.82
HMBOX1-216ENST00000561377 CACNB1Q02641 598 aaPredicted RBP20.15■□□□□ 0.82
HMBOX1-216ENST00000561377 C1QBPQ07021 282 aaKnown RBP20.05■□□□□ 0.8
HMBOX1-216ENST00000561377 SLC4A2P04920 1241 aa19.77■□□□□ 0.76
HMBOX1-216ENST00000561377 U3KPZ7 1027 aaPredicted RBP19.75■□□□□ 0.75
HMBOX1-216ENST00000561377 SLC4A1APQ9BWU0 796 aaKnown RBP19.7■□□□□ 0.74
HMBOX1-216ENST00000561377 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.41■□□□□ 0.7
HMBOX1-216ENST00000561377 HNRNPUL2Q1KMD3 747 aaKnown RBP19.41■□□□□ 0.7
HMBOX1-216ENST00000561377 APLP2Q06481 763 aa19.36■□□□□ 0.69
HMBOX1-216ENST00000561377 CAPN15O75808 1086 aa19.34■□□□□ 0.69
HMBOX1-216ENST00000561377 SPINK5Q9NQ38 1064 aaPredicted RBP19.34■□□□□ 0.69
HMBOX1-216ENST00000561377 MYCNP04198 464 aaPredicted RBP19.31■□□□□ 0.68
HMBOX1-216ENST00000561377 SAMD1Q6SPF0 538 aaPredicted RBP19.3■□□□□ 0.68
HMBOX1-216ENST00000561377 FOXD4L1Q9NU39 408 aa19.3■□□□□ 0.68
HMBOX1-216ENST00000561377 ZNF219Q9P2Y4 722 aaPredicted RBP19.13■□□□□ 0.65
HMBOX1-216ENST00000561377 TRHP20396 242 aaPredicted RBP19.11■□□□□ 0.65
HMBOX1-216ENST00000561377 DSG3P32926 999 aa19.11■□□□□ 0.65
HMBOX1-216ENST00000561377 ZBTB22O15209 634 aa19.03■□□□□ 0.64
HMBOX1-216ENST00000561377 ABCB7O75027 752 aa18.89■□□□□ 0.61
HMBOX1-216ENST00000561377 ATF5Q9Y2D1 282 aaPredicted RBP18.73■□□□□ 0.59
HMBOX1-216ENST00000561377 ATXN8OSP0DMR3 200 aa18.68■□□□□ 0.58
HMBOX1-216ENST00000561377 POLA2Q14181 598 aa18.67■□□□□ 0.58
HMBOX1-216ENST00000561377 CSRNP3Q8WYN3 585 aa18.53■□□□□ 0.56
HMBOX1-216ENST00000561377 EHMT2Q96KQ7 1210 aa18.5■□□□□ 0.55
HMBOX1-216ENST00000561377 ZBTB12Q9Y330 459 aaPredicted RBP18.4■□□□□ 0.54
HMBOX1-216ENST00000561377 RBM42Q9BTD8 480 aaKnown RBP18.31■□□□□ 0.52
HMBOX1-216ENST00000561377 FBLN2P98095 1184 aa18.1■□□□□ 0.49
HMBOX1-216ENST00000561377 OSCARQ8IYS5 282 aa18.05■□□□□ 0.48
HMBOX1-216ENST00000561377 AKT1S1Q96B36 256 aa17.94■□□□□ 0.46
HMBOX1-216ENST00000561377 MKRN4PQ13434 485 aaPredicted RBP17.91■□□□□ 0.46
HMBOX1-216ENST00000561377 SPDYE2BA6NHP3 402 aa17.83■□□□□ 0.44
HMBOX1-216ENST00000561377 SPDYE6P0CI01 402 aa17.83■□□□□ 0.44
HMBOX1-216ENST00000561377 SPDYE2Q495Y8 402 aa17.83■□□□□ 0.44
HMBOX1-216ENST00000561377 POTEHQ6S545 545 aa17.73■□□□□ 0.43
HMBOX1-216ENST00000561377 REM2Q8IYK8 340 aaPredicted RBP17.73■□□□□ 0.43
HMBOX1-216ENST00000561377 CHRDL2Q6WN34 429 aa17.7■□□□□ 0.42
HMBOX1-216ENST00000561377 ZNF692Q9BU19 519 aaPredicted RBP17.66■□□□□ 0.42
HMBOX1-216ENST00000561377 SSUH2Q9Y2M2 353 aa17.6■□□□□ 0.41
HMBOX1-216ENST00000561377 PITPNM1O00562 1244 aa17.52■□□□□ 0.4
HMBOX1-216ENST00000561377 SPDYE1Q8NFV5 336 aaPredicted RBP17.44■□□□□ 0.38
HMBOX1-216ENST00000561377 PABPN1Q86U42 306 aaKnown RBP eCLIP17.4■□□□□ 0.38
HMBOX1-216ENST00000561377 CLEC11AQ9Y240 323 aa17.37■□□□□ 0.37
HMBOX1-216ENST00000561377 PIP4P2Q8N4L2 257 aa17.34■□□□□ 0.37
HMBOX1-216ENST00000561377 SPDYE4A6NLX3 237 aa17.31■□□□□ 0.36
HMBOX1-216ENST00000561377 FXR2P51116 673 aaKnown RBP eCLIP17.31■□□□□ 0.36
HMBOX1-216ENST00000561377 PRR29P0C7W0 189 aa17.15■□□□□ 0.34
HMBOX1-216ENST00000561377 PRKAR2AP13861 404 aaKnown RBP17.1■□□□□ 0.33
HMBOX1-216ENST00000561377 STAG3Q9UJ98 1225 aa17.07■□□□□ 0.32
HMBOX1-216ENST00000561377 HAX1O00165 279 aa16.95■□□□□ 0.3
HMBOX1-216ENST00000561377 CHADLQ6NUI6 762 aa16.95■□□□□ 0.3
HMBOX1-216ENST00000561377 PROM2Q8N271 834 aa16.92■□□□□ 0.3
HMBOX1-216ENST00000561377 FKBP8Q14318 412 aa16.82■□□□□ 0.28
HMBOX1-216ENST00000561377 SP7Q8TDD2 431 aaPredicted RBP16.81■□□□□ 0.28
HMBOX1-216ENST00000561377 FARP1Q9Y4F1 1045 aaPredicted RBP16.77■□□□□ 0.28
HMBOX1-216ENST00000561377 CREBZFQ9NS37 354 aa16.76■□□□□ 0.27
HMBOX1-216ENST00000561377 C19orf67A6NJJ6 358 aa16.74■□□□□ 0.27
HMBOX1-216ENST00000561377 EVX2Q03828 476 aa16.69■□□□□ 0.26
HMBOX1-216ENST00000561377 CD44P16070 742 aaKnown RBP16.58■□□□□ 0.24
HMBOX1-216ENST00000561377 NPM1P06748 294 aaKnown RBP eCLIP16.54■□□□□ 0.24
HMBOX1-216ENST00000561377 PLEKHG5O94827 1062 aa16.52■□□□□ 0.24
HMBOX1-216ENST00000561377 MNX1P50219 401 aaPredicted RBP16.5■□□□□ 0.23
HMBOX1-216ENST00000561377 MIER1Q8N108 512 aa16.48■□□□□ 0.23
HMBOX1-216ENST00000561377 FBXO3Q9UK99 471 aa16.43■□□□□ 0.22
HMBOX1-216ENST00000561377 PAK3O75914 559 aaPredicted RBP16.42■□□□□ 0.22
HMBOX1-216ENST00000561377 PLCD3Q8N3E9 789 aa16.41■□□□□ 0.22
HMBOX1-216ENST00000561377 ZRANB1Q9UGI0 708 aa16.41■□□□□ 0.22
HMBOX1-216ENST00000561377 GABBR2O75899 941 aa16.39■□□□□ 0.21
HMBOX1-216ENST00000561377 CLCN6P51797 869 aa16.36■□□□□ 0.21
HMBOX1-216ENST00000561377 ZNF579Q8NAF0 562 aaKnown RBP16.35■□□□□ 0.21
HMBOX1-216ENST00000561377 ZBTB47Q9UFB7 747 aaPredicted RBP16.31■□□□□ 0.2
HMBOX1-216ENST00000561377 TSPYL2Q9H2G4 693 aaPredicted RBP16.21■□□□□ 0.19
HMBOX1-216ENST00000561377 PHF12Q96QT6 1004 aa16.18■□□□□ 0.18
HMBOX1-216ENST00000561377 VASPP50552 380 aaPredicted RBP16.17■□□□□ 0.18
HMBOX1-216ENST00000561377 RASEFQ8IZ41 740 aa16.13■□□□□ 0.17
HMBOX1-216ENST00000561377 CCDC61Q9Y6R9 512 aa16.1■□□□□ 0.17
HMBOX1-216ENST00000561377 GALR2O43603 387 aaPredicted RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms