RNA–Protein interactions for RNA: ENST00000560842.1

PSMA4-221, Transcript of proteasome subunit alpha 4, humanhuman

TSL 1 (best)

Gene PSMA4, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-221ENST00000560842 AEBP2Q6ZN18 517 aaPredicted RBP31.05■■■□□ 2.56
PSMA4-221ENST00000560842 CHIC1Q5VXU3 224 aa29.25■■■□□ 2.27
PSMA4-221ENST00000560842 SENP3Q9H4L4 574 aaPredicted RBP26.54■■□□□ 1.84
PSMA4-221ENST00000560842 PHF23Q9BUL5 403 aaPredicted RBP26.17■■□□□ 1.78
PSMA4-221ENST00000560842 FOXD1Q16676 465 aa24.77■■□□□ 1.56
PSMA4-221ENST00000560842 MSH5O43196 834 aa23.29■■□□□ 1.32
PSMA4-221ENST00000560842 PLPPR3Q6T4P5 718 aa23.25■■□□□ 1.31
PSMA4-221ENST00000560842 POTEDQ86YR6 584 aa23.17■■□□□ 1.3
PSMA4-221ENST00000560842 PIAS4Q8N2W9 510 aaPredicted RBP23.06■■□□□ 1.28
PSMA4-221ENST00000560842 PPP6R1Q9UPN7 881 aa22.96■■□□□ 1.27
PSMA4-221ENST00000560842 ADRA2BP18089 450 aa22.85■■□□□ 1.25
PSMA4-221ENST00000560842 MAPK8IP2Q13387 824 aaPredicted RBP21.08■□□□□ 0.97
PSMA4-221ENST00000560842 DMRT2Q9Y5R5 561 aa21.01■□□□□ 0.95
PSMA4-221ENST00000560842 SCAF1Q9H7N4 1312 aaKnown RBP20.94■□□□□ 0.94
PSMA4-221ENST00000560842 PPP4R3CPQ6ZMV5 832 aa20.34■□□□□ 0.85
PSMA4-221ENST00000560842 HOXD11P31277 338 aaPredicted RBP20.15■□□□□ 0.82
PSMA4-221ENST00000560842 CACNB1Q02641 598 aaPredicted RBP20.13■□□□□ 0.81
PSMA4-221ENST00000560842 DCAF8L1A6NGE4 600 aa20.11■□□□□ 0.81
PSMA4-221ENST00000560842 CNKSR2Q8WXI2 1034 aa20.04■□□□□ 0.8
PSMA4-221ENST00000560842 RNF216Q9NWF9 866 aaPredicted RBP19.93■□□□□ 0.78
PSMA4-221ENST00000560842 RNF39Q9H2S5 420 aa19.84■□□□□ 0.77
PSMA4-221ENST00000560842 C1QBPQ07021 282 aaKnown RBP19.55■□□□□ 0.72
PSMA4-221ENST00000560842 DNAJC5BQ9UF47 199 aa19.54■□□□□ 0.72
PSMA4-221ENST00000560842 NCBP3Q53F19 620 aaKnown RBP19.49■□□□□ 0.71
PSMA4-221ENST00000560842 NPM3O75607 178 aaKnown RBP19.19■□□□□ 0.66
PSMA4-221ENST00000560842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.16■□□□□ 0.66
PSMA4-221ENST00000560842 U3KPZ7 1027 aaPredicted RBP18.74■□□□□ 0.59
PSMA4-221ENST00000560842 KCNA4P22459 653 aa18.58■□□□□ 0.56
PSMA4-221ENST00000560842 SPINK5Q9NQ38 1064 aaPredicted RBP18.54■□□□□ 0.56
PSMA4-221ENST00000560842 CAPN15O75808 1086 aa18.51■□□□□ 0.55
PSMA4-221ENST00000560842 DSG3P32926 999 aa18.5■□□□□ 0.55
PSMA4-221ENST00000560842 SLC4A2P04920 1241 aa18.41■□□□□ 0.54
PSMA4-221ENST00000560842 APLP2Q06481 763 aa18.2■□□□□ 0.5
PSMA4-221ENST00000560842 TRHP20396 242 aaPredicted RBP18.15■□□□□ 0.5
PSMA4-221ENST00000560842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.13■□□□□ 0.49
PSMA4-221ENST00000560842 HNRNPUL2Q1KMD3 747 aaKnown RBP18.13■□□□□ 0.49
PSMA4-221ENST00000560842 ZNF219Q9P2Y4 722 aaPredicted RBP18.12■□□□□ 0.49
PSMA4-221ENST00000560842 POTEHQ6S545 545 aa18.1■□□□□ 0.49
PSMA4-221ENST00000560842 ABCB7O75027 752 aa18.05■□□□□ 0.48
PSMA4-221ENST00000560842 SAMD1Q6SPF0 538 aaPredicted RBP18■□□□□ 0.47
PSMA4-221ENST00000560842 MYCNP04198 464 aaPredicted RBP17.76■□□□□ 0.43
PSMA4-221ENST00000560842 RBM42Q9BTD8 480 aaKnown RBP17.65■□□□□ 0.42
PSMA4-221ENST00000560842 POLA2Q14181 598 aa17.63■□□□□ 0.41
PSMA4-221ENST00000560842 SLC4A1APQ9BWU0 796 aaKnown RBP17.48■□□□□ 0.39
PSMA4-221ENST00000560842 FOXD4L1Q9NU39 408 aa17.42■□□□□ 0.38
PSMA4-221ENST00000560842 CHRDL2Q6WN34 429 aa17.36■□□□□ 0.37
PSMA4-221ENST00000560842 ATF5Q9Y2D1 282 aaPredicted RBP17.36■□□□□ 0.37
PSMA4-221ENST00000560842 ZBTB12Q9Y330 459 aaPredicted RBP17.25■□□□□ 0.35
PSMA4-221ENST00000560842 AKT1S1Q96B36 256 aa17.2■□□□□ 0.34
PSMA4-221ENST00000560842 ZBTB22O15209 634 aa17.07■□□□□ 0.32
PSMA4-221ENST00000560842 OSCARQ8IYS5 282 aa17.04■□□□□ 0.32
PSMA4-221ENST00000560842 REM2Q8IYK8 340 aaPredicted RBP17.03■□□□□ 0.32
PSMA4-221ENST00000560842 ATXN8OSP0DMR3 200 aa16.95■□□□□ 0.3
PSMA4-221ENST00000560842 PIP4P2Q8N4L2 257 aa16.9■□□□□ 0.3
PSMA4-221ENST00000560842 SP7Q8TDD2 431 aaPredicted RBP16.85■□□□□ 0.29
PSMA4-221ENST00000560842 PITPNM1O00562 1244 aa16.84■□□□□ 0.29
PSMA4-221ENST00000560842 FXR2P51116 673 aaKnown RBP eCLIP16.78■□□□□ 0.28
PSMA4-221ENST00000560842 FBLN2P98095 1184 aa16.71■□□□□ 0.27
PSMA4-221ENST00000560842 SPDYE2BA6NHP3 402 aa16.7■□□□□ 0.26
PSMA4-221ENST00000560842 SPDYE6P0CI01 402 aa16.7■□□□□ 0.26
PSMA4-221ENST00000560842 SPDYE2Q495Y8 402 aa16.7■□□□□ 0.26
PSMA4-221ENST00000560842 HAX1O00165 279 aa16.65■□□□□ 0.26
PSMA4-221ENST00000560842 MKRN4PQ13434 485 aaPredicted RBP16.55■□□□□ 0.24
PSMA4-221ENST00000560842 SPDYE1Q8NFV5 336 aaPredicted RBP16.47■□□□□ 0.23
PSMA4-221ENST00000560842 ZNF692Q9BU19 519 aaPredicted RBP16.45■□□□□ 0.22
PSMA4-221ENST00000560842 SSUH2Q9Y2M2 353 aa16.45■□□□□ 0.22
PSMA4-221ENST00000560842 EVX2Q03828 476 aa16.44■□□□□ 0.22
PSMA4-221ENST00000560842 CLEC11AQ9Y240 323 aa16.44■□□□□ 0.22
PSMA4-221ENST00000560842 PRKAR2AP13861 404 aaKnown RBP16.4■□□□□ 0.22
PSMA4-221ENST00000560842 C19orf67A6NJJ6 358 aa16.24■□□□□ 0.19
PSMA4-221ENST00000560842 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
PSMA4-221ENST00000560842 PRR29P0C7W0 189 aa16.15■□□□□ 0.18
PSMA4-221ENST00000560842 CHADLQ6NUI6 762 aa16.14■□□□□ 0.17
PSMA4-221ENST00000560842 GABBR2O75899 941 aa16.06■□□□□ 0.16
PSMA4-221ENST00000560842 CSRNP3Q8WYN3 585 aa16.06■□□□□ 0.16
PSMA4-221ENST00000560842 FARP1Q9Y4F1 1045 aaPredicted RBP15.91■□□□□ 0.14
PSMA4-221ENST00000560842 CD44P16070 742 aaKnown RBP15.86■□□□□ 0.13
PSMA4-221ENST00000560842 LHX8Q68G74 356 aa15.81■□□□□ 0.12
PSMA4-221ENST00000560842 CLCN6P51797 869 aa15.76■□□□□ 0.11
PSMA4-221ENST00000560842 POTEIP0CG38 1075 aa15.72■□□□□ 0.11
PSMA4-221ENST00000560842 STAG3Q9UJ98 1225 aa15.72■□□□□ 0.11
PSMA4-221ENST00000560842 CREBZFQ9NS37 354 aa15.69■□□□□ 0.1
PSMA4-221ENST00000560842 EHMT2Q96KQ7 1210 aa15.65■□□□□ 0.1
PSMA4-221ENST00000560842 SPDYE4A6NLX3 237 aa15.64■□□□□ 0.09
PSMA4-221ENST00000560842 ZNF579Q8NAF0 562 aaKnown RBP15.62■□□□□ 0.09
PSMA4-221ENST00000560842 ZRANB1Q9UGI0 708 aa15.6■□□□□ 0.09
PSMA4-221ENST00000560842 DCBLD2Q96PD2 775 aa15.56■□□□□ 0.08
PSMA4-221ENST00000560842 GALR2O43603 387 aaPredicted RBP15.43■□□□□ 0.06
PSMA4-221ENST00000560842 PAK3O75914 559 aaPredicted RBP15.41■□□□□ 0.06
PSMA4-221ENST00000560842 NPM1P06748 294 aaKnown RBP eCLIP15.39■□□□□ 0.05
PSMA4-221ENST00000560842 MNX1P50219 401 aaPredicted RBP15.39■□□□□ 0.05
PSMA4-221ENST00000560842 PHF12Q96QT6 1004 aa15.34■□□□□ 0.05
PSMA4-221ENST00000560842 PROM2Q8N271 834 aa15.25■□□□□ 0.03
PSMA4-221ENST00000560842 POTEB2H3BUK9 544 aa15.2■□□□□ 0.02
PSMA4-221ENST00000560842 OTUD5Q96G74 571 aa15.19■□□□□ 0.02
PSMA4-221ENST00000560842 PELP1Q8IZL8 1130 aaKnown RBP15.18■□□□□ 0.02
PSMA4-221ENST00000560842 MS4A3Q96HJ5 214 aa15.14■□□□□ 0.01
PSMA4-221ENST00000560842 ASTLQ6HA08 431 aaPredicted RBP15.12■□□□□ 0.01
PSMA4-221ENST00000560842 ATMINO43313 823 aaPredicted RBP15.08■□□□□ 0
PSMA4-221ENST00000560842 TSPYL2Q9H2G4 693 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms