RNA–Protein interactions for RNA: ENST00000560179.1

ETFA-212, Transcript of electron transfer flavoprotein subunit alpha, humanhuman

TSL 2

Gene ETFA, Length 650 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ETFA-212ENST00000560179 AEBP2Q6ZN18 517 aaPredicted RBP36.52■■■■□ 3.44
ETFA-212ENST00000560179 CHIC1Q5VXU3 224 aa35.92■■■■□ 3.34
ETFA-212ENST00000560179 PHF23Q9BUL5 403 aaPredicted RBP31.65■■■□□ 2.66
ETFA-212ENST00000560179 SENP3Q9H4L4 574 aaPredicted RBP30.91■■■□□ 2.54
ETFA-212ENST00000560179 PLPPR3Q6T4P5 718 aa29.28■■■□□ 2.28
ETFA-212ENST00000560179 FOXD1Q16676 465 aa28.68■■■□□ 2.18
ETFA-212ENST00000560179 PPP6R1Q9UPN7 881 aa27.84■■■□□ 2.05
ETFA-212ENST00000560179 ADRA2BP18089 450 aa27.81■■■□□ 2.04
ETFA-212ENST00000560179 PIAS4Q8N2W9 510 aaPredicted RBP27.09■■□□□ 1.93
ETFA-212ENST00000560179 MSH5O43196 834 aa26.31■■□□□ 1.8
ETFA-212ENST00000560179 PPP4R3CPQ6ZMV5 832 aa25.86■■□□□ 1.73
ETFA-212ENST00000560179 KCNA4P22459 653 aa25.57■■□□□ 1.68
ETFA-212ENST00000560179 SCAF1Q9H7N4 1312 aaKnown RBP25.43■■□□□ 1.66
ETFA-212ENST00000560179 NCBP3Q53F19 620 aaKnown RBP25.24■■□□□ 1.63
ETFA-212ENST00000560179 MAPK8IP2Q13387 824 aaPredicted RBP25.17■■□□□ 1.62
ETFA-212ENST00000560179 CNKSR2Q8WXI2 1034 aa25.06■■□□□ 1.6
ETFA-212ENST00000560179 NPM3O75607 178 aaKnown RBP24.89■■□□□ 1.58
ETFA-212ENST00000560179 DMRT2Q9Y5R5 561 aa24.73■■□□□ 1.55
ETFA-212ENST00000560179 RNF216Q9NWF9 866 aaPredicted RBP24.51■■□□□ 1.51
ETFA-212ENST00000560179 SLC4A1APQ9BWU0 796 aaKnown RBP24.39■■□□□ 1.49
ETFA-212ENST00000560179 HOXD11P31277 338 aaPredicted RBP24.34■■□□□ 1.49
ETFA-212ENST00000560179 DNAJC5BQ9UF47 199 aa24.13■■□□□ 1.45
ETFA-212ENST00000560179 EHMT2Q96KQ7 1210 aa24.01■■□□□ 1.43
ETFA-212ENST00000560179 CSRNP3Q8WYN3 585 aa23.64■■□□□ 1.37
ETFA-212ENST00000560179 DCAF8L1A6NGE4 600 aa23.63■■□□□ 1.37
ETFA-212ENST00000560179 ZBTB22O15209 634 aa23.54■■□□□ 1.36
ETFA-212ENST00000560179 POTEDQ86YR6 584 aa23.49■■□□□ 1.35
ETFA-212ENST00000560179 SLC4A2P04920 1241 aa23.45■■□□□ 1.34
ETFA-212ENST00000560179 FOXD4L1Q9NU39 408 aa23.43■■□□□ 1.34
ETFA-212ENST00000560179 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.18■■□□□ 1.3
ETFA-212ENST00000560179 MYCNP04198 464 aaPredicted RBP22.97■■□□□ 1.27
ETFA-212ENST00000560179 U3KPZ7 1027 aaPredicted RBP22.85■■□□□ 1.25
ETFA-212ENST00000560179 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.63■■□□□ 1.21
ETFA-212ENST00000560179 HNRNPUL2Q1KMD3 747 aaKnown RBP22.63■■□□□ 1.21
ETFA-212ENST00000560179 ATXN8OSP0DMR3 200 aa22.61■■□□□ 1.21
ETFA-212ENST00000560179 RNF39Q9H2S5 420 aa22.59■■□□□ 1.21
ETFA-212ENST00000560179 SAMD1Q6SPF0 538 aaPredicted RBP22.56■■□□□ 1.2
ETFA-212ENST00000560179 ATF5Q9Y2D1 282 aaPredicted RBP22.38■■□□□ 1.17
ETFA-212ENST00000560179 C1QBPQ07021 282 aaKnown RBP22.33■■□□□ 1.17
ETFA-212ENST00000560179 APLP2Q06481 763 aa22.32■■□□□ 1.16
ETFA-212ENST00000560179 SPINK5Q9NQ38 1064 aaPredicted RBP22.13■■□□□ 1.13
ETFA-212ENST00000560179 CAPN15O75808 1086 aa22.01■■□□□ 1.11
ETFA-212ENST00000560179 TRHP20396 242 aaPredicted RBP21.99■■□□□ 1.11
ETFA-212ENST00000560179 ZNF219Q9P2Y4 722 aaPredicted RBP21.99■■□□□ 1.11
ETFA-212ENST00000560179 CACNB1Q02641 598 aaPredicted RBP21.8■■□□□ 1.08
ETFA-212ENST00000560179 POLA2Q14181 598 aa21.71■■□□□ 1.07
ETFA-212ENST00000560179 ABCB7O75027 752 aa21.63■■□□□ 1.05
ETFA-212ENST00000560179 DSG3P32926 999 aa21.59■■□□□ 1.05
ETFA-212ENST00000560179 MKRN4PQ13434 485 aaPredicted RBP21.41■■□□□ 1.02
ETFA-212ENST00000560179 FBLN2P98095 1184 aa21.38■■□□□ 1.01
ETFA-212ENST00000560179 FKBP8Q14318 412 aa21.33■■□□□ 1.01
ETFA-212ENST00000560179 ZBTB12Q9Y330 459 aaPredicted RBP21.33■■□□□ 1.01
ETFA-212ENST00000560179 SPDYE4A6NLX3 237 aa21.05■□□□□ 0.96
ETFA-212ENST00000560179 OSCARQ8IYS5 282 aa20.93■□□□□ 0.94
ETFA-212ENST00000560179 SPDYE2BA6NHP3 402 aa20.79■□□□□ 0.92
ETFA-212ENST00000560179 SPDYE6P0CI01 402 aa20.79■□□□□ 0.92
ETFA-212ENST00000560179 SPDYE2Q495Y8 402 aa20.79■□□□□ 0.92
ETFA-212ENST00000560179 ZNF692Q9BU19 519 aaPredicted RBP20.77■□□□□ 0.92
ETFA-212ENST00000560179 PROM2Q8N271 834 aa20.75■□□□□ 0.91
ETFA-212ENST00000560179 SSUH2Q9Y2M2 353 aa20.67■□□□□ 0.9
ETFA-212ENST00000560179 RBM42Q9BTD8 480 aaKnown RBP20.54■□□□□ 0.88
ETFA-212ENST00000560179 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
ETFA-212ENST00000560179 FBXO3Q9UK99 471 aa20.49■□□□□ 0.87
ETFA-212ENST00000560179 AKT1S1Q96B36 256 aa20.37■□□□□ 0.85
ETFA-212ENST00000560179 STAG3Q9UJ98 1225 aa20.21■□□□□ 0.83
ETFA-212ENST00000560179 VASPP50552 380 aaPredicted RBP20.2■□□□□ 0.82
ETFA-212ENST00000560179 REM2Q8IYK8 340 aaPredicted RBP20.18■□□□□ 0.82
ETFA-212ENST00000560179 SPDYE1Q8NFV5 336 aaPredicted RBP20.11■□□□□ 0.81
ETFA-212ENST00000560179 CLEC11AQ9Y240 323 aa20.02■□□□□ 0.8
ETFA-212ENST00000560179 IFNLR1Q8IU57 520 aaPredicted RBP19.98■□□□□ 0.79
ETFA-212ENST00000560179 PITPNM1O00562 1244 aa19.94■□□□□ 0.78
ETFA-212ENST00000560179 MIER1Q8N108 512 aa19.94■□□□□ 0.78
ETFA-212ENST00000560179 PLCD3Q8N3E9 789 aa19.92■□□□□ 0.78
ETFA-212ENST00000560179 AMER1Q5JTC6 1135 aaPredicted RBP19.91■□□□□ 0.78
ETFA-212ENST00000560179 PRR29P0C7W0 189 aa19.89■□□□□ 0.77
ETFA-212ENST00000560179 RTN4Q9NQC3 1192 aaKnown RBP19.88■□□□□ 0.77
ETFA-212ENST00000560179 KLHL34Q8N239 644 aa19.8■□□□□ 0.76
ETFA-212ENST00000560179 PLEKHG5O94827 1062 aa19.78■□□□□ 0.76
ETFA-212ENST00000560179 CREBZFQ9NS37 354 aa19.7■□□□□ 0.74
ETFA-212ENST00000560179 SPOCK2Q92563 424 aa19.68■□□□□ 0.74
ETFA-212ENST00000560179 ZBTB47Q9UFB7 747 aaPredicted RBP19.67■□□□□ 0.74
ETFA-212ENST00000560179 CHRDL2Q6WN34 429 aa19.59■□□□□ 0.73
ETFA-212ENST00000560179 MNX1P50219 401 aaPredicted RBP19.54■□□□□ 0.72
ETFA-212ENST00000560179 FXR2P51116 673 aaKnown RBP eCLIP19.53■□□□□ 0.72
ETFA-212ENST00000560179 CHADLQ6NUI6 762 aa19.51■□□□□ 0.71
ETFA-212ENST00000560179 PRKAR2AP13861 404 aaKnown RBP19.44■□□□□ 0.7
ETFA-212ENST00000560179 PIP4P2Q8N4L2 257 aa19.42■□□□□ 0.7
ETFA-212ENST00000560179 NUBP1P53384 320 aa19.41■□□□□ 0.7
ETFA-212ENST00000560179 PKD2Q13563 968 aa19.41■□□□□ 0.7
ETFA-212ENST00000560179 NPM1P06748 294 aaKnown RBP eCLIP19.36■□□□□ 0.69
ETFA-212ENST00000560179 FARP1Q9Y4F1 1045 aaPredicted RBP19.36■□□□□ 0.69
ETFA-212ENST00000560179 CIZ1Q9ULV3 898 aaPredicted RBP19.32■□□□□ 0.68
ETFA-212ENST00000560179 GSE1Q14687 1217 aa19.25■□□□□ 0.67
ETFA-212ENST00000560179 RASEFQ8IZ41 740 aa19.25■□□□□ 0.67
ETFA-212ENST00000560179 DCAF8Q5TAQ9 597 aa19.24■□□□□ 0.67
ETFA-212ENST00000560179 ECM2O94769 699 aaPredicted RBP19.23■□□□□ 0.67
ETFA-212ENST00000560179 FAM212AQ96EL1 285 aa19.21■□□□□ 0.67
ETFA-212ENST00000560179 TRIM41Q8WV44 630 aa19.12■□□□□ 0.65
ETFA-212ENST00000560179 TSPYL2Q9H2G4 693 aaPredicted RBP19.06■□□□□ 0.64
ETFA-212ENST00000560179 RGL2O15211 777 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms