RNA–Protein interactions for RNA: ENST00000559151.1

CASC4-208, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 883 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-208ENST00000559151 AEBP2Q6ZN18 517 aaPredicted RBP47.39■■■■■ 5.18
CASC4-208ENST00000559151 CHIC1Q5VXU3 224 aa47.29■■■■■ 5.16
CASC4-208ENST00000559151 PHF23Q9BUL5 403 aaPredicted RBP41.78■■■■■ 4.28
CASC4-208ENST00000559151 SENP3Q9H4L4 574 aaPredicted RBP39.93■■■■□ 3.98
CASC4-208ENST00000559151 PLPPR3Q6T4P5 718 aa38.86■■■■□ 3.81
CASC4-208ENST00000559151 FOXD1Q16676 465 aa37■■■■□ 3.51
CASC4-208ENST00000559151 ADRA2BP18089 450 aa36.54■■■■□ 3.44
CASC4-208ENST00000559151 PPP6R1Q9UPN7 881 aa36.51■■■■□ 3.44
CASC4-208ENST00000559151 PIAS4Q8N2W9 510 aaPredicted RBP35.15■■■■□ 3.22
CASC4-208ENST00000559151 KCNA4P22459 653 aa34.94■■■■□ 3.18
CASC4-208ENST00000559151 PPP4R3CPQ6ZMV5 832 aa34.43■■■■□ 3.1
CASC4-208ENST00000559151 EHMT2Q96KQ7 1210 aa33.83■■■■□ 3.01
CASC4-208ENST00000559151 NCBP3Q53F19 620 aaKnown RBP33.77■■■■□ 3
CASC4-208ENST00000559151 MSH5O43196 834 aa33.59■■■□□ 2.97
CASC4-208ENST00000559151 SLC4A1APQ9BWU0 796 aaKnown RBP33.43■■■□□ 2.94
CASC4-208ENST00000559151 NPM3O75607 178 aaKnown RBP33.38■■■□□ 2.93
CASC4-208ENST00000559151 SCAF1Q9H7N4 1312 aaKnown RBP33.27■■■□□ 2.92
CASC4-208ENST00000559151 CNKSR2Q8WXI2 1034 aa33.18■■■□□ 2.9
CASC4-208ENST00000559151 CSRNP3Q8WYN3 585 aa32.89■■■□□ 2.86
CASC4-208ENST00000559151 MAPK8IP2Q13387 824 aaPredicted RBP32.84■■■□□ 2.85
CASC4-208ENST00000559151 RNF216Q9NWF9 866 aaPredicted RBP32.25■■■□□ 2.75
CASC4-208ENST00000559151 ZBTB22O15209 634 aa32.21■■■□□ 2.75
CASC4-208ENST00000559151 DNAJC5BQ9UF47 199 aa32.12■■■□□ 2.73
CASC4-208ENST00000559151 DMRT2Q9Y5R5 561 aa32.08■■■□□ 2.73
CASC4-208ENST00000559151 HOXD11P31277 338 aaPredicted RBP31.84■■■□□ 2.69
CASC4-208ENST00000559151 FOXD4L1Q9NU39 408 aa31.78■■■□□ 2.68
CASC4-208ENST00000559151 SLC4A2P04920 1241 aa31.26■■■□□ 2.59
CASC4-208ENST00000559151 MYCNP04198 464 aaPredicted RBP30.77■■■□□ 2.52
CASC4-208ENST00000559151 DCAF8L1A6NGE4 600 aa30.68■■■□□ 2.5
CASC4-208ENST00000559151 ATXN8OSP0DMR3 200 aa30.5■■■□□ 2.47
CASC4-208ENST00000559151 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.36■■■□□ 2.45
CASC4-208ENST00000559151 U3KPZ7 1027 aaPredicted RBP30.04■■■□□ 2.4
CASC4-208ENST00000559151 ATF5Q9Y2D1 282 aaPredicted RBP29.97■■■□□ 2.39
CASC4-208ENST00000559151 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.9■■■□□ 2.38
CASC4-208ENST00000559151 HNRNPUL2Q1KMD3 747 aaKnown RBP29.9■■■□□ 2.38
CASC4-208ENST00000559151 SAMD1Q6SPF0 538 aaPredicted RBP29.88■■■□□ 2.37
CASC4-208ENST00000559151 FKBP8Q14318 412 aa29.67■■■□□ 2.34
CASC4-208ENST00000559151 APLP2Q06481 763 aa29.31■■■□□ 2.28
CASC4-208ENST00000559151 ZNF219Q9P2Y4 722 aaPredicted RBP29.28■■■□□ 2.28
CASC4-208ENST00000559151 RTN4Q9NQC3 1192 aaKnown RBP28.98■■■□□ 2.23
CASC4-208ENST00000559151 RNF39Q9H2S5 420 aa28.93■■■□□ 2.22
CASC4-208ENST00000559151 AMER1Q5JTC6 1135 aaPredicted RBP28.92■■■□□ 2.22
CASC4-208ENST00000559151 SPINK5Q9NQ38 1064 aaPredicted RBP28.89■■■□□ 2.22
CASC4-208ENST00000559151 TRHP20396 242 aaPredicted RBP28.83■■■□□ 2.21
CASC4-208ENST00000559151 POTEDQ86YR6 584 aa28.73■■■□□ 2.19
CASC4-208ENST00000559151 MKRN4PQ13434 485 aaPredicted RBP28.7■■■□□ 2.18
CASC4-208ENST00000559151 CAPN15O75808 1086 aa28.68■■■□□ 2.18
CASC4-208ENST00000559151 C1QBPQ07021 282 aaKnown RBP28.6■■■□□ 2.17
CASC4-208ENST00000559151 POLA2Q14181 598 aa28.6■■■□□ 2.17
CASC4-208ENST00000559151 SPDYE4A6NLX3 237 aa28.54■■■□□ 2.16
CASC4-208ENST00000559151 FBLN2P98095 1184 aa28.51■■■□□ 2.15
CASC4-208ENST00000559151 ABCB7O75027 752 aa28.3■■■□□ 2.12
CASC4-208ENST00000559151 PROM2Q8N271 834 aa28.21■■■□□ 2.11
CASC4-208ENST00000559151 FBXO3Q9UK99 471 aa28.2■■■□□ 2.1
CASC4-208ENST00000559151 ZBTB12Q9Y330 459 aaPredicted RBP28.11■■■□□ 2.09
CASC4-208ENST00000559151 DSG3P32926 999 aa27.94■■■□□ 2.06
CASC4-208ENST00000559151 SLC24A1O60721 1099 aa27.93■■■□□ 2.06
CASC4-208ENST00000559151 VASPP50552 380 aaPredicted RBP27.86■■■□□ 2.05
CASC4-208ENST00000559151 OSCARQ8IYS5 282 aa27.63■■■□□ 2.01
CASC4-208ENST00000559151 IFNLR1Q8IU57 520 aaPredicted RBP27.59■■■□□ 2.01
CASC4-208ENST00000559151 ZNF692Q9BU19 519 aaPredicted RBP27.59■■■□□ 2.01
CASC4-208ENST00000559151 SPDYE2BA6NHP3 402 aa27.48■■□□□ 1.99
CASC4-208ENST00000559151 SPDYE6P0CI01 402 aa27.48■■□□□ 1.99
CASC4-208ENST00000559151 SPDYE2Q495Y8 402 aa27.48■■□□□ 1.99
CASC4-208ENST00000559151 SSUH2Q9Y2M2 353 aa27.43■■□□□ 1.98
CASC4-208ENST00000559151 CACNB1Q02641 598 aaPredicted RBP27.38■■□□□ 1.97
CASC4-208ENST00000559151 PABPN1Q86U42 306 aaKnown RBP eCLIP27.28■■□□□ 1.96
CASC4-208ENST00000559151 STAG3Q9UJ98 1225 aa27.21■■□□□ 1.95
CASC4-208ENST00000559151 KLHL34Q8N239 644 aa27.12■■□□□ 1.93
CASC4-208ENST00000559151 PKD2Q13563 968 aa27.1■■□□□ 1.93
CASC4-208ENST00000559151 SPOCK2Q92563 424 aa27.04■■□□□ 1.92
CASC4-208ENST00000559151 PLCD3Q8N3E9 789 aa27.02■■□□□ 1.92
CASC4-208ENST00000559151 DCAF8L2P0C7V8 631 aa26.95■■□□□ 1.9
CASC4-208ENST00000559151 MIER1Q8N108 512 aa26.93■■□□□ 1.9
CASC4-208ENST00000559151 PLCB2Q00722 1185 aa26.75■■□□□ 1.87
CASC4-208ENST00000559151 ECM2O94769 699 aaPredicted RBP26.72■■□□□ 1.87
CASC4-208ENST00000559151 PLEKHG5O94827 1062 aa26.63■■□□□ 1.85
CASC4-208ENST00000559151 ZBTB47Q9UFB7 747 aaPredicted RBP26.57■■□□□ 1.84
CASC4-208ENST00000559151 RBM42Q9BTD8 480 aaKnown RBP26.51■■□□□ 1.83
CASC4-208ENST00000559151 RGL2O15211 777 aa26.46■■□□□ 1.83
CASC4-208ENST00000559151 CIZ1Q9ULV3 898 aaPredicted RBP26.46■■□□□ 1.83
CASC4-208ENST00000559151 AKT1S1Q96B36 256 aa26.45■■□□□ 1.82
CASC4-208ENST00000559151 SPDYE1Q8NFV5 336 aaPredicted RBP26.41■■□□□ 1.82
CASC4-208ENST00000559151 HAP1P54257 671 aaPredicted RBP26.4■■□□□ 1.82
CASC4-208ENST00000559151 NPM1P06748 294 aaKnown RBP eCLIP26.35■■□□□ 1.81
CASC4-208ENST00000559151 CLEC11AQ9Y240 323 aa26.3■■□□□ 1.8
CASC4-208ENST00000559151 BBXQ8WY36 941 aaPredicted RBP26.28■■□□□ 1.8
CASC4-208ENST00000559151 REM2Q8IYK8 340 aaPredicted RBP26.24■■□□□ 1.79
CASC4-208ENST00000559151 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.21■■□□□ 1.79
CASC4-208ENST00000559151 PRR29P0C7W0 189 aa26.18■■□□□ 1.78
CASC4-208ENST00000559151 NUBP1P53384 320 aa26.15■■□□□ 1.78
CASC4-208ENST00000559151 CREBZFQ9NS37 354 aa26.15■■□□□ 1.78
CASC4-208ENST00000559151 TRIM41Q8WV44 630 aa26.14■■□□□ 1.78
CASC4-208ENST00000559151 GSE1Q14687 1217 aa26.1■■□□□ 1.77
CASC4-208ENST00000559151 PAXIP1Q6ZW49 1069 aaPredicted RBP26.08■■□□□ 1.77
CASC4-208ENST00000559151 CHGAP10645 457 aaKnown RBP26.03■■□□□ 1.76
CASC4-208ENST00000559151 CFAP44Q96MT7 982 aa26.03■■□□□ 1.76
CASC4-208ENST00000559151 MNX1P50219 401 aaPredicted RBP26.02■■□□□ 1.76
CASC4-208ENST00000559151 DCAF8Q5TAQ9 597 aa26■■□□□ 1.75
CASC4-208ENST00000559151 PITPNM1O00562 1244 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms