RNA–Protein interactions for RNA: ENST00000558271.5

LRRC49-209, Transcript of leucine rich repeat containing 49, humanhuman

TSL 4

Gene LRRC49, Length 573 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC49-209ENST00000558271 AEBP2Q6ZN18 517 aaPredicted RBP24.21■■□□□ 1.47
LRRC49-209ENST00000558271 CHIC1Q5VXU3 224 aa22.9■■□□□ 1.26
LRRC49-209ENST00000558271 SENP3Q9H4L4 574 aaPredicted RBP20.64■□□□□ 0.89
LRRC49-209ENST00000558271 PHF23Q9BUL5 403 aaPredicted RBP20.39■□□□□ 0.85
LRRC49-209ENST00000558271 FOXD1Q16676 465 aa19.27■□□□□ 0.68
LRRC49-209ENST00000558271 PLPPR3Q6T4P5 718 aa18.24■□□□□ 0.51
LRRC49-209ENST00000558271 POTEDQ86YR6 584 aa18.15■□□□□ 0.5
LRRC49-209ENST00000558271 MSH5O43196 834 aa18.05■□□□□ 0.48
LRRC49-209ENST00000558271 PPP6R1Q9UPN7 881 aa17.96■□□□□ 0.47
LRRC49-209ENST00000558271 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
LRRC49-209ENST00000558271 ADRA2BP18089 450 aa17.87■□□□□ 0.45
LRRC49-209ENST00000558271 MAPK8IP2Q13387 824 aaPredicted RBP16.46■□□□□ 0.23
LRRC49-209ENST00000558271 DMRT2Q9Y5R5 561 aa16.37■□□□□ 0.21
LRRC49-209ENST00000558271 SCAF1Q9H7N4 1312 aaKnown RBP16.36■□□□□ 0.21
LRRC49-209ENST00000558271 PPP4R3CPQ6ZMV5 832 aa15.98■□□□□ 0.15
LRRC49-209ENST00000558271 HOXD11P31277 338 aaPredicted RBP15.75■□□□□ 0.11
LRRC49-209ENST00000558271 CNKSR2Q8WXI2 1034 aa15.71■□□□□ 0.11
LRRC49-209ENST00000558271 DCAF8L1A6NGE4 600 aa15.63■□□□□ 0.09
LRRC49-209ENST00000558271 RNF216Q9NWF9 866 aaPredicted RBP15.6■□□□□ 0.09
LRRC49-209ENST00000558271 CACNB1Q02641 598 aaPredicted RBP15.52■□□□□ 0.08
LRRC49-209ENST00000558271 RNF39Q9H2S5 420 aa15.41■□□□□ 0.06
LRRC49-209ENST00000558271 NCBP3Q53F19 620 aaKnown RBP15.33■□□□□ 0.04
LRRC49-209ENST00000558271 DNAJC5BQ9UF47 199 aa15.26■□□□□ 0.03
LRRC49-209ENST00000558271 C1QBPQ07021 282 aaKnown RBP15.18■□□□□ 0.02
LRRC49-209ENST00000558271 NPM3O75607 178 aaKnown RBP15.11■□□□□ 0.01
LRRC49-209ENST00000558271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.01
LRRC49-209ENST00000558271 KCNA4P22459 653 aa14.74□□□□□ -0.05
LRRC49-209ENST00000558271 U3KPZ7 1027 aaPredicted RBP14.66□□□□□ -0.06
LRRC49-209ENST00000558271 SLC4A2P04920 1241 aa14.48□□□□□ -0.09
LRRC49-209ENST00000558271 SPINK5Q9NQ38 1064 aaPredicted RBP14.46□□□□□ -0.09
LRRC49-209ENST00000558271 CAPN15O75808 1086 aa14.41□□□□□ -0.1
LRRC49-209ENST00000558271 DSG3P32926 999 aa14.4□□□□□ -0.1
LRRC49-209ENST00000558271 APLP2Q06481 763 aa14.21□□□□□ -0.13
LRRC49-209ENST00000558271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.2□□□□□ -0.14
LRRC49-209ENST00000558271 HNRNPUL2Q1KMD3 747 aaKnown RBP14.2□□□□□ -0.14
LRRC49-209ENST00000558271 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
LRRC49-209ENST00000558271 ZNF219Q9P2Y4 722 aaPredicted RBP14.15□□□□□ -0.14
LRRC49-209ENST00000558271 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
LRRC49-209ENST00000558271 ABCB7O75027 752 aa14.06□□□□□ -0.16
LRRC49-209ENST00000558271 POTEHQ6S545 545 aa14.06□□□□□ -0.16
LRRC49-209ENST00000558271 MYCNP04198 464 aaPredicted RBP13.97□□□□□ -0.17
LRRC49-209ENST00000558271 SLC4A1APQ9BWU0 796 aaKnown RBP13.89□□□□□ -0.19
LRRC49-209ENST00000558271 POLA2Q14181 598 aa13.8□□□□□ -0.2
LRRC49-209ENST00000558271 FOXD4L1Q9NU39 408 aa13.78□□□□□ -0.2
LRRC49-209ENST00000558271 RBM42Q9BTD8 480 aaKnown RBP13.71□□□□□ -0.21
LRRC49-209ENST00000558271 ATF5Q9Y2D1 282 aaPredicted RBP13.68□□□□□ -0.22
LRRC49-209ENST00000558271 ZBTB22O15209 634 aa13.56□□□□□ -0.24
LRRC49-209ENST00000558271 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
LRRC49-209ENST00000558271 CHRDL2Q6WN34 429 aa13.46□□□□□ -0.25
LRRC49-209ENST00000558271 ATXN8OSP0DMR3 200 aa13.41□□□□□ -0.26
LRRC49-209ENST00000558271 AKT1S1Q96B36 256 aa13.4□□□□□ -0.26
LRRC49-209ENST00000558271 OSCARQ8IYS5 282 aa13.32□□□□□ -0.28
LRRC49-209ENST00000558271 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
LRRC49-209ENST00000558271 PIP4P2Q8N4L2 257 aa13.12□□□□□ -0.31
LRRC49-209ENST00000558271 PITPNM1O00562 1244 aa13.11□□□□□ -0.31
LRRC49-209ENST00000558271 FBLN2P98095 1184 aa13.11□□□□□ -0.31
LRRC49-209ENST00000558271 SPDYE2BA6NHP3 402 aa13.09□□□□□ -0.31
LRRC49-209ENST00000558271 SPDYE6P0CI01 402 aa13.09□□□□□ -0.31
LRRC49-209ENST00000558271 SPDYE2Q495Y8 402 aa13.09□□□□□ -0.31
LRRC49-209ENST00000558271 FXR2P51116 673 aaKnown RBP eCLIP13.06□□□□□ -0.32
LRRC49-209ENST00000558271 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
LRRC49-209ENST00000558271 SP7Q8TDD2 431 aaPredicted RBP12.99□□□□□ -0.33
LRRC49-209ENST00000558271 ZNF692Q9BU19 519 aaPredicted RBP12.91□□□□□ -0.34
LRRC49-209ENST00000558271 SSUH2Q9Y2M2 353 aa12.91□□□□□ -0.34
LRRC49-209ENST00000558271 HAX1O00165 279 aa12.89□□□□□ -0.35
LRRC49-209ENST00000558271 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
LRRC49-209ENST00000558271 CSRNP3Q8WYN3 585 aa12.87□□□□□ -0.35
LRRC49-209ENST00000558271 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
LRRC49-209ENST00000558271 PRKAR2AP13861 404 aaKnown RBP12.77□□□□□ -0.37
LRRC49-209ENST00000558271 EVX2Q03828 476 aa12.76□□□□□ -0.37
LRRC49-209ENST00000558271 PABPN1Q86U42 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
LRRC49-209ENST00000558271 C19orf67A6NJJ6 358 aa12.64□□□□□ -0.39
LRRC49-209ENST00000558271 PRR29P0C7W0 189 aa12.63□□□□□ -0.39
LRRC49-209ENST00000558271 CHADLQ6NUI6 762 aa12.6□□□□□ -0.39
LRRC49-209ENST00000558271 EHMT2Q96KQ7 1210 aa12.58□□□□□ -0.4
LRRC49-209ENST00000558271 GABBR2O75899 941 aa12.46□□□□□ -0.41
LRRC49-209ENST00000558271 FARP1Q9Y4F1 1045 aaPredicted RBP12.44□□□□□ -0.42
LRRC49-209ENST00000558271 SPDYE4A6NLX3 237 aa12.36□□□□□ -0.43
LRRC49-209ENST00000558271 STAG3Q9UJ98 1225 aa12.36□□□□□ -0.43
LRRC49-209ENST00000558271 CD44P16070 742 aaKnown RBP12.35□□□□□ -0.43
LRRC49-209ENST00000558271 CREBZFQ9NS37 354 aa12.31□□□□□ -0.44
LRRC49-209ENST00000558271 CLCN6P51797 869 aa12.26□□□□□ -0.45
LRRC49-209ENST00000558271 POTEIP0CG38 1075 aa12.21□□□□□ -0.45
LRRC49-209ENST00000558271 LHX8Q68G74 356 aa12.19□□□□□ -0.46
LRRC49-209ENST00000558271 ZNF579Q8NAF0 562 aaKnown RBP12.18□□□□□ -0.46
LRRC49-209ENST00000558271 ZRANB1Q9UGI0 708 aa12.17□□□□□ -0.46
LRRC49-209ENST00000558271 MNX1P50219 401 aaPredicted RBP12.11□□□□□ -0.47
LRRC49-209ENST00000558271 PROM2Q8N271 834 aa12.1□□□□□ -0.47
LRRC49-209ENST00000558271 DCBLD2Q96PD2 775 aa12.07□□□□□ -0.48
LRRC49-209ENST00000558271 NPM1P06748 294 aaKnown RBP eCLIP12.06□□□□□ -0.48
LRRC49-209ENST00000558271 GALR2O43603 387 aaPredicted RBP12.03□□□□□ -0.48
LRRC49-209ENST00000558271 PAK3O75914 559 aaPredicted RBP12.03□□□□□ -0.48
LRRC49-209ENST00000558271 PHF12Q96QT6 1004 aa11.99□□□□□ -0.49
LRRC49-209ENST00000558271 PELP1Q8IZL8 1130 aaKnown RBP11.83□□□□□ -0.52
LRRC49-209ENST00000558271 MS4A3Q96HJ5 214 aa11.82□□□□□ -0.52
LRRC49-209ENST00000558271 TSPYL2Q9H2G4 693 aaPredicted RBP11.82□□□□□ -0.52
LRRC49-209ENST00000558271 MIER1Q8N108 512 aa11.81□□□□□ -0.52
LRRC49-209ENST00000558271 CCDC61Q9Y6R9 512 aa11.81□□□□□ -0.52
LRRC49-209ENST00000558271 POTEB2H3BUK9 544 aa11.8□□□□□ -0.52
LRRC49-209ENST00000558271 ASTLQ6HA08 431 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms