RNA–Protein interactions for RNA: ENST00000558103.1

CLPX-202, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 5

Gene CLPX, Length 605 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-202ENST00000558103 AEBP2Q6ZN18 517 aaPredicted RBP29.68■■■□□ 2.34
CLPX-202ENST00000558103 CHIC1Q5VXU3 224 aa27.61■■■□□ 2.01
CLPX-202ENST00000558103 SENP3Q9H4L4 574 aaPredicted RBP25.34■■□□□ 1.65
CLPX-202ENST00000558103 PHF23Q9BUL5 403 aaPredicted RBP24.97■■□□□ 1.59
CLPX-202ENST00000558103 FOXD1Q16676 465 aa23.81■■□□□ 1.4
CLPX-202ENST00000558103 POTEDQ86YR6 584 aa23.57■■□□□ 1.36
CLPX-202ENST00000558103 MSH5O43196 834 aa22.52■■□□□ 1.2
CLPX-202ENST00000558103 PIAS4Q8N2W9 510 aaPredicted RBP22.04■■□□□ 1.12
CLPX-202ENST00000558103 PLPPR3Q6T4P5 718 aa21.72■■□□□ 1.07
CLPX-202ENST00000558103 PPP6R1Q9UPN7 881 aa21.65■■□□□ 1.06
CLPX-202ENST00000558103 ADRA2BP18089 450 aa21.53■■□□□ 1.04
CLPX-202ENST00000558103 MAPK8IP2Q13387 824 aaPredicted RBP20.07■□□□□ 0.8
CLPX-202ENST00000558103 DMRT2Q9Y5R5 561 aa19.97■□□□□ 0.79
CLPX-202ENST00000558103 CACNB1Q02641 598 aaPredicted RBP19.96■□□□□ 0.79
CLPX-202ENST00000558103 SCAF1Q9H7N4 1312 aaKnown RBP19.55■□□□□ 0.72
CLPX-202ENST00000558103 DCAF8L1A6NGE4 600 aa19.34■□□□□ 0.69
CLPX-202ENST00000558103 RNF39Q9H2S5 420 aa19.17■□□□□ 0.66
CLPX-202ENST00000558103 PPP4R3CPQ6ZMV5 832 aa19.13■□□□□ 0.65
CLPX-202ENST00000558103 HOXD11P31277 338 aaPredicted RBP18.88■□□□□ 0.61
CLPX-202ENST00000558103 C1QBPQ07021 282 aaKnown RBP18.8■□□□□ 0.6
CLPX-202ENST00000558103 NCBP3Q53F19 620 aaKnown RBP18.62■□□□□ 0.57
CLPX-202ENST00000558103 CNKSR2Q8WXI2 1034 aa18.62■□□□□ 0.57
CLPX-202ENST00000558103 KCNA4P22459 653 aa18.58■□□□□ 0.56
CLPX-202ENST00000558103 RNF216Q9NWF9 866 aaPredicted RBP18.5■□□□□ 0.55
CLPX-202ENST00000558103 NPM3O75607 178 aaKnown RBP18.33■□□□□ 0.52
CLPX-202ENST00000558103 POTEHQ6S545 545 aa18.28■□□□□ 0.52
CLPX-202ENST00000558103 DNAJC5BQ9UF47 199 aa18.27■□□□□ 0.52
CLPX-202ENST00000558103 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLPX-202ENST00000558103 DSG3P32926 999 aa17.69■□□□□ 0.42
CLPX-202ENST00000558103 SLC4A1APQ9BWU0 796 aaKnown RBP17.68■□□□□ 0.42
CLPX-202ENST00000558103 SPINK5Q9NQ38 1064 aaPredicted RBP17.64■□□□□ 0.41
CLPX-202ENST00000558103 CAPN15O75808 1086 aa17.63■□□□□ 0.41
CLPX-202ENST00000558103 U3KPZ7 1027 aaPredicted RBP17.58■□□□□ 0.4
CLPX-202ENST00000558103 SLC4A2P04920 1241 aa17.34■□□□□ 0.37
CLPX-202ENST00000558103 ABCB7O75027 752 aa17.2■□□□□ 0.34
CLPX-202ENST00000558103 TRHP20396 242 aaPredicted RBP17.16■□□□□ 0.34
CLPX-202ENST00000558103 FOXD4L1Q9NU39 408 aa17.12■□□□□ 0.33
CLPX-202ENST00000558103 ZBTB22O15209 634 aa17.09■□□□□ 0.33
CLPX-202ENST00000558103 EHMT2Q96KQ7 1210 aa17.04■□□□□ 0.32
CLPX-202ENST00000558103 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
CLPX-202ENST00000558103 CSRNP3Q8WYN3 585 aa16.94■□□□□ 0.3
CLPX-202ENST00000558103 MYCNP04198 464 aaPredicted RBP16.93■□□□□ 0.3
CLPX-202ENST00000558103 CHRDL2Q6WN34 429 aa16.88■□□□□ 0.29
CLPX-202ENST00000558103 APLP2Q06481 763 aa16.85■□□□□ 0.29
CLPX-202ENST00000558103 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.84■□□□□ 0.29
CLPX-202ENST00000558103 HNRNPUL2Q1KMD3 747 aaKnown RBP16.84■□□□□ 0.29
CLPX-202ENST00000558103 RBM42Q9BTD8 480 aaKnown RBP16.81■□□□□ 0.28
CLPX-202ENST00000558103 SAMD1Q6SPF0 538 aaPredicted RBP16.77■□□□□ 0.28
CLPX-202ENST00000558103 SP7Q8TDD2 431 aaPredicted RBP16.71■□□□□ 0.27
CLPX-202ENST00000558103 ATXN8OSP0DMR3 200 aa16.57■□□□□ 0.24
CLPX-202ENST00000558103 ATF5Q9Y2D1 282 aaPredicted RBP16.49■□□□□ 0.23
CLPX-202ENST00000558103 POLA2Q14181 598 aa16.47■□□□□ 0.23
CLPX-202ENST00000558103 PIP4P2Q8N4L2 257 aa16.31■□□□□ 0.2
CLPX-202ENST00000558103 HAX1O00165 279 aa16.28■□□□□ 0.2
CLPX-202ENST00000558103 AKT1S1Q96B36 256 aa16.27■□□□□ 0.2
CLPX-202ENST00000558103 REM2Q8IYK8 340 aaPredicted RBP16.18■□□□□ 0.18
CLPX-202ENST00000558103 EVX2Q03828 476 aa16.06■□□□□ 0.16
CLPX-202ENST00000558103 PITPNM1O00562 1244 aa16.04■□□□□ 0.16
CLPX-202ENST00000558103 FXR2P51116 673 aaKnown RBP eCLIP16.03■□□□□ 0.16
CLPX-202ENST00000558103 OSCARQ8IYS5 282 aa15.99■□□□□ 0.15
CLPX-202ENST00000558103 ZBTB12Q9Y330 459 aaPredicted RBP15.92■□□□□ 0.14
CLPX-202ENST00000558103 FBLN2P98095 1184 aa15.8■□□□□ 0.12
CLPX-202ENST00000558103 MKRN4PQ13434 485 aaPredicted RBP15.77■□□□□ 0.12
CLPX-202ENST00000558103 LHX8Q68G74 356 aa15.69■□□□□ 0.1
CLPX-202ENST00000558103 PRKAR2AP13861 404 aaKnown RBP15.62■□□□□ 0.09
CLPX-202ENST00000558103 GABBR2O75899 941 aa15.58■□□□□ 0.08
CLPX-202ENST00000558103 C19orf67A6NJJ6 358 aa15.54■□□□□ 0.08
CLPX-202ENST00000558103 PLSCR2Q9NRY7 297 aa15.51■□□□□ 0.07
CLPX-202ENST00000558103 CLEC11AQ9Y240 323 aa15.5■□□□□ 0.07
CLPX-202ENST00000558103 SPDYE2BA6NHP3 402 aa15.47■□□□□ 0.07
CLPX-202ENST00000558103 SPDYE6P0CI01 402 aa15.47■□□□□ 0.07
CLPX-202ENST00000558103 SPDYE2Q495Y8 402 aa15.47■□□□□ 0.07
CLPX-202ENST00000558103 ZNF692Q9BU19 519 aaPredicted RBP15.41■□□□□ 0.06
CLPX-202ENST00000558103 SPDYE4A6NLX3 237 aa15.37■□□□□ 0.05
CLPX-202ENST00000558103 SPDYE1Q8NFV5 336 aaPredicted RBP15.37■□□□□ 0.05
CLPX-202ENST00000558103 SSUH2Q9Y2M2 353 aa15.34■□□□□ 0.05
CLPX-202ENST00000558103 CHADLQ6NUI6 762 aa15.33■□□□□ 0.04
CLPX-202ENST00000558103 FKBP8Q14318 412 aa15.29■□□□□ 0.04
CLPX-202ENST00000558103 POTEIP0CG38 1075 aa15.27■□□□□ 0.04
CLPX-202ENST00000558103 NISCHQ9Y2I1 1504 aa15.27■□□□□ 0.03
CLPX-202ENST00000558103 PABPN1Q86U42 306 aaKnown RBP eCLIP15.19■□□□□ 0.02
CLPX-202ENST00000558103 PROM2Q8N271 834 aa15.12■□□□□ 0.01
CLPX-202ENST00000558103 PRR29P0C7W0 189 aa15.06■□□□□ 0
CLPX-202ENST00000558103 CD44P16070 742 aaKnown RBP15.06■□□□□ 0
CLPX-202ENST00000558103 DCBLD2Q96PD2 775 aa14.97□□□□□ -0.01
CLPX-202ENST00000558103 STAG3Q9UJ98 1225 aa14.95□□□□□ -0.02
CLPX-202ENST00000558103 FARP1Q9Y4F1 1045 aaPredicted RBP14.92□□□□□ -0.02
CLPX-202ENST00000558103 OTUD5Q96G74 571 aa14.86□□□□□ -0.03
CLPX-202ENST00000558103 CLCN6P51797 869 aa14.84□□□□□ -0.03
CLPX-202ENST00000558103 POTEMA6NI47 508 aa14.83□□□□□ -0.04
CLPX-202ENST00000558103 FBXO3Q9UK99 471 aa14.8□□□□□ -0.04
CLPX-202ENST00000558103 POTEB2H3BUK9 544 aa14.77□□□□□ -0.05
CLPX-202ENST00000558103 POTEGQ6S5H5 508 aa14.76□□□□□ -0.05
CLPX-202ENST00000558103 ZRANB1Q9UGI0 708 aa14.74□□□□□ -0.05
CLPX-202ENST00000558103 ZNF579Q8NAF0 562 aaKnown RBP14.73□□□□□ -0.05
CLPX-202ENST00000558103 GALR2O43603 387 aaPredicted RBP14.7□□□□□ -0.06
CLPX-202ENST00000558103 CREBZFQ9NS37 354 aa14.63□□□□□ -0.07
CLPX-202ENST00000558103 MIER1Q8N108 512 aa14.62□□□□□ -0.07
CLPX-202ENST00000558103 VASPP50552 380 aaPredicted RBP14.57□□□□□ -0.08
CLPX-202ENST00000558103 PLCD3Q8N3E9 789 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms