RNA–Protein interactions for RNA: ENST00000557030.5

ATXN3-246, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-246ENST00000557030 AEBP2Q6ZN18 517 aaPredicted RBP25.36■■□□□ 1.65
ATXN3-246ENST00000557030 CHIC1Q5VXU3 224 aa24.5■■□□□ 1.51
ATXN3-246ENST00000557030 PHF23Q9BUL5 403 aaPredicted RBP21.56■■□□□ 1.04
ATXN3-246ENST00000557030 SENP3Q9H4L4 574 aaPredicted RBP21.47■■□□□ 1.03
ATXN3-246ENST00000557030 FOXD1Q16676 465 aa20■□□□□ 0.79
ATXN3-246ENST00000557030 PLPPR3Q6T4P5 718 aa19.74■□□□□ 0.75
ATXN3-246ENST00000557030 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
ATXN3-246ENST00000557030 ADRA2BP18089 450 aa18.99■□□□□ 0.63
ATXN3-246ENST00000557030 PIAS4Q8N2W9 510 aaPredicted RBP18.72■□□□□ 0.59
ATXN3-246ENST00000557030 MSH5O43196 834 aa18.49■□□□□ 0.55
ATXN3-246ENST00000557030 PPP4R3CPQ6ZMV5 832 aa17.36■□□□□ 0.37
ATXN3-246ENST00000557030 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
ATXN3-246ENST00000557030 MAPK8IP2Q13387 824 aaPredicted RBP17.32■□□□□ 0.36
ATXN3-246ENST00000557030 POTEDQ86YR6 584 aa17.29■□□□□ 0.36
ATXN3-246ENST00000557030 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
ATXN3-246ENST00000557030 CNKSR2Q8WXI2 1034 aa16.94■□□□□ 0.3
ATXN3-246ENST00000557030 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
ATXN3-246ENST00000557030 HOXD11P31277 338 aaPredicted RBP16.74■□□□□ 0.27
ATXN3-246ENST00000557030 KCNA4P22459 653 aa16.7■□□□□ 0.26
ATXN3-246ENST00000557030 RNF216Q9NWF9 866 aaPredicted RBP16.69■□□□□ 0.26
ATXN3-246ENST00000557030 NPM3O75607 178 aaKnown RBP16.62■□□□□ 0.25
ATXN3-246ENST00000557030 DNAJC5BQ9UF47 199 aa16.32■□□□□ 0.2
ATXN3-246ENST00000557030 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
ATXN3-246ENST00000557030 RNF39Q9H2S5 420 aa15.87■□□□□ 0.13
ATXN3-246ENST00000557030 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
ATXN3-246ENST00000557030 SLC4A1APQ9BWU0 796 aaKnown RBP15.8■□□□□ 0.12
ATXN3-246ENST00000557030 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.79■□□□□ 0.12
ATXN3-246ENST00000557030 C1QBPQ07021 282 aaKnown RBP15.64■□□□□ 0.09
ATXN3-246ENST00000557030 U3KPZ7 1027 aaPredicted RBP15.63■□□□□ 0.09
ATXN3-246ENST00000557030 CACNB1Q02641 598 aaPredicted RBP15.52■□□□□ 0.08
ATXN3-246ENST00000557030 FOXD4L1Q9NU39 408 aa15.42■□□□□ 0.06
ATXN3-246ENST00000557030 ZBTB22O15209 634 aa15.41■□□□□ 0.06
ATXN3-246ENST00000557030 MYCNP04198 464 aaPredicted RBP15.32■□□□□ 0.04
ATXN3-246ENST00000557030 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.04
ATXN3-246ENST00000557030 HNRNPUL2Q1KMD3 747 aaKnown RBP15.27■□□□□ 0.04
ATXN3-246ENST00000557030 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
ATXN3-246ENST00000557030 SAMD1Q6SPF0 538 aaPredicted RBP15.21■□□□□ 0.03
ATXN3-246ENST00000557030 APLP2Q06481 763 aa15.12■□□□□ 0.01
ATXN3-246ENST00000557030 CSRNP3Q8WYN3 585 aa15.11■□□□□ 0.01
ATXN3-246ENST00000557030 CAPN15O75808 1086 aa15.09■□□□□ 0.01
ATXN3-246ENST00000557030 DSG3P32926 999 aa15.01□□□□□ -0.01
ATXN3-246ENST00000557030 EHMT2Q96KQ7 1210 aa15.01□□□□□ -0.01
ATXN3-246ENST00000557030 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
ATXN3-246ENST00000557030 ATF5Q9Y2D1 282 aaPredicted RBP14.98□□□□□ -0.01
ATXN3-246ENST00000557030 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
ATXN3-246ENST00000557030 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
ATXN3-246ENST00000557030 ABCB7O75027 752 aa14.79□□□□□ -0.04
ATXN3-246ENST00000557030 POLA2Q14181 598 aa14.72□□□□□ -0.05
ATXN3-246ENST00000557030 ZBTB12Q9Y330 459 aaPredicted RBP14.44□□□□□ -0.1
ATXN3-246ENST00000557030 MKRN4PQ13434 485 aaPredicted RBP14.34□□□□□ -0.11
ATXN3-246ENST00000557030 FBLN2P98095 1184 aa14.25□□□□□ -0.13
ATXN3-246ENST00000557030 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
ATXN3-246ENST00000557030 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
ATXN3-246ENST00000557030 SPDYE2BA6NHP3 402 aa14.07□□□□□ -0.16
ATXN3-246ENST00000557030 SPDYE6P0CI01 402 aa14.07□□□□□ -0.16
ATXN3-246ENST00000557030 SPDYE2Q495Y8 402 aa14.07□□□□□ -0.16
ATXN3-246ENST00000557030 AKT1S1Q96B36 256 aa14.05□□□□□ -0.16
ATXN3-246ENST00000557030 SSUH2Q9Y2M2 353 aa13.99□□□□□ -0.17
ATXN3-246ENST00000557030 ZNF692Q9BU19 519 aaPredicted RBP13.93□□□□□ -0.18
ATXN3-246ENST00000557030 REM2Q8IYK8 340 aaPredicted RBP13.91□□□□□ -0.18
ATXN3-246ENST00000557030 SPDYE4A6NLX3 237 aa13.81□□□□□ -0.2
ATXN3-246ENST00000557030 PITPNM1O00562 1244 aa13.76□□□□□ -0.21
ATXN3-246ENST00000557030 CHRDL2Q6WN34 429 aa13.76□□□□□ -0.21
ATXN3-246ENST00000557030 PABPN1Q86U42 306 aaKnown RBP eCLIP13.75□□□□□ -0.21
ATXN3-246ENST00000557030 PROM2Q8N271 834 aa13.69□□□□□ -0.22
ATXN3-246ENST00000557030 SPDYE1Q8NFV5 336 aaPredicted RBP13.68□□□□□ -0.22
ATXN3-246ENST00000557030 POTEHQ6S545 545 aa13.61□□□□□ -0.23
ATXN3-246ENST00000557030 FXR2P51116 673 aaKnown RBP eCLIP13.6□□□□□ -0.23
ATXN3-246ENST00000557030 FKBP8Q14318 412 aa13.57□□□□□ -0.24
ATXN3-246ENST00000557030 PIP4P2Q8N4L2 257 aa13.56□□□□□ -0.24
ATXN3-246ENST00000557030 CLEC11AQ9Y240 323 aa13.56□□□□□ -0.24
ATXN3-246ENST00000557030 STAG3Q9UJ98 1225 aa13.47□□□□□ -0.25
ATXN3-246ENST00000557030 PRR29P0C7W0 189 aa13.45□□□□□ -0.26
ATXN3-246ENST00000557030 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
ATXN3-246ENST00000557030 CHADLQ6NUI6 762 aa13.32□□□□□ -0.28
ATXN3-246ENST00000557030 CREBZFQ9NS37 354 aa13.31□□□□□ -0.28
ATXN3-246ENST00000557030 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
ATXN3-246ENST00000557030 FARP1Q9Y4F1 1045 aaPredicted RBP13.2□□□□□ -0.3
ATXN3-246ENST00000557030 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
ATXN3-246ENST00000557030 C19orf67A6NJJ6 358 aa13.13□□□□□ -0.31
ATXN3-246ENST00000557030 HAX1O00165 279 aa13.1□□□□□ -0.31
ATXN3-246ENST00000557030 EVX2Q03828 476 aa13.1□□□□□ -0.31
ATXN3-246ENST00000557030 MIER1Q8N108 512 aa13.07□□□□□ -0.32
ATXN3-246ENST00000557030 VASPP50552 380 aaPredicted RBP13.02□□□□□ -0.33
ATXN3-246ENST00000557030 PLCD3Q8N3E9 789 aa13□□□□□ -0.33
ATXN3-246ENST00000557030 NPM1P06748 294 aaKnown RBP eCLIP12.98□□□□□ -0.33
ATXN3-246ENST00000557030 SP7Q8TDD2 431 aaPredicted RBP12.98□□□□□ -0.33
ATXN3-246ENST00000557030 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
ATXN3-246ENST00000557030 PLEKHG5O94827 1062 aa12.96□□□□□ -0.33
ATXN3-246ENST00000557030 ZBTB47Q9UFB7 747 aaPredicted RBP12.91□□□□□ -0.34
ATXN3-246ENST00000557030 NUBP1P53384 320 aa12.88□□□□□ -0.35
ATXN3-246ENST00000557030 IFNLR1Q8IU57 520 aaPredicted RBP12.87□□□□□ -0.35
ATXN3-246ENST00000557030 RASEFQ8IZ41 740 aa12.85□□□□□ -0.35
ATXN3-246ENST00000557030 ZNF579Q8NAF0 562 aaKnown RBP12.85□□□□□ -0.35
ATXN3-246ENST00000557030 ZRANB1Q9UGI0 708 aa12.85□□□□□ -0.35
ATXN3-246ENST00000557030 GABBR2O75899 941 aa12.8□□□□□ -0.36
ATXN3-246ENST00000557030 CCDC61Q9Y6R9 512 aa12.79□□□□□ -0.36
ATXN3-246ENST00000557030 PAK3O75914 559 aaPredicted RBP12.78□□□□□ -0.36
ATXN3-246ENST00000557030 CLCN6P51797 869 aa12.77□□□□□ -0.37
ATXN3-246ENST00000557030 TSPYL2Q9H2G4 693 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms