RNA–Protein interactions for RNA: ENST00000556923.1

LINC00648-203, long intergenic non-protein coding RNA 648, humanhuman

TSL 5

Gene LINC00648, Length 276 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00648-203ENST00000556923 AEBP2Q6ZN18 517 aaPredicted RBP29.56■■■□□ 2.32
LINC00648-203ENST00000556923 CHIC1Q5VXU3 224 aa28.46■■■□□ 2.15
LINC00648-203ENST00000556923 SENP3Q9H4L4 574 aaPredicted RBP25.09■■□□□ 1.61
LINC00648-203ENST00000556923 PHF23Q9BUL5 403 aaPredicted RBP25.01■■□□□ 1.59
LINC00648-203ENST00000556923 FOXD1Q16676 465 aa23.37■■□□□ 1.33
LINC00648-203ENST00000556923 PLPPR3Q6T4P5 718 aa22.92■■□□□ 1.26
LINC00648-203ENST00000556923 PPP6R1Q9UPN7 881 aa22.2■■□□□ 1.14
LINC00648-203ENST00000556923 ADRA2BP18089 450 aa22.14■■□□□ 1.13
LINC00648-203ENST00000556923 PIAS4Q8N2W9 510 aaPredicted RBP21.93■■□□□ 1.1
LINC00648-203ENST00000556923 MSH5O43196 834 aa21.66■■□□□ 1.06
LINC00648-203ENST00000556923 POTEDQ86YR6 584 aa20.43■□□□□ 0.86
LINC00648-203ENST00000556923 MAPK8IP2Q13387 824 aaPredicted RBP20.22■□□□□ 0.83
LINC00648-203ENST00000556923 SCAF1Q9H7N4 1312 aaKnown RBP20.2■□□□□ 0.82
LINC00648-203ENST00000556923 PPP4R3CPQ6ZMV5 832 aa20.16■□□□□ 0.82
LINC00648-203ENST00000556923 DMRT2Q9Y5R5 561 aa19.98■□□□□ 0.79
LINC00648-203ENST00000556923 CNKSR2Q8WXI2 1034 aa19.66■□□□□ 0.74
LINC00648-203ENST00000556923 NCBP3Q53F19 620 aaKnown RBP19.48■□□□□ 0.71
LINC00648-203ENST00000556923 HOXD11P31277 338 aaPredicted RBP19.42■□□□□ 0.7
LINC00648-203ENST00000556923 RNF216Q9NWF9 866 aaPredicted RBP19.39■□□□□ 0.69
LINC00648-203ENST00000556923 KCNA4P22459 653 aa19.28■□□□□ 0.68
LINC00648-203ENST00000556923 NPM3O75607 178 aaKnown RBP19.25■□□□□ 0.67
LINC00648-203ENST00000556923 DCAF8L1A6NGE4 600 aa19.12■□□□□ 0.65
LINC00648-203ENST00000556923 DNAJC5BQ9UF47 199 aa18.73■□□□□ 0.59
LINC00648-203ENST00000556923 RNF39Q9H2S5 420 aa18.55■□□□□ 0.56
LINC00648-203ENST00000556923 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.48■□□□□ 0.55
LINC00648-203ENST00000556923 CACNB1Q02641 598 aaPredicted RBP18.32■□□□□ 0.52
LINC00648-203ENST00000556923 SLC4A2P04920 1241 aa18.28■□□□□ 0.52
LINC00648-203ENST00000556923 C1QBPQ07021 282 aaKnown RBP18.28■□□□□ 0.52
LINC00648-203ENST00000556923 SLC4A1APQ9BWU0 796 aaKnown RBP18.26■□□□□ 0.51
LINC00648-203ENST00000556923 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
LINC00648-203ENST00000556923 FOXD4L1Q9NU39 408 aa17.83■□□□□ 0.44
LINC00648-203ENST00000556923 SPINK5Q9NQ38 1064 aaPredicted RBP17.79■□□□□ 0.44
LINC00648-203ENST00000556923 MYCNP04198 464 aaPredicted RBP17.77■□□□□ 0.44
LINC00648-203ENST00000556923 ZBTB22O15209 634 aa17.76■□□□□ 0.43
LINC00648-203ENST00000556923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.75■□□□□ 0.43
LINC00648-203ENST00000556923 HNRNPUL2Q1KMD3 747 aaKnown RBP17.75■□□□□ 0.43
LINC00648-203ENST00000556923 CAPN15O75808 1086 aa17.71■□□□□ 0.43
LINC00648-203ENST00000556923 SAMD1Q6SPF0 538 aaPredicted RBP17.69■□□□□ 0.42
LINC00648-203ENST00000556923 APLP2Q06481 763 aa17.65■□□□□ 0.42
LINC00648-203ENST00000556923 TRHP20396 242 aaPredicted RBP17.53■□□□□ 0.4
LINC00648-203ENST00000556923 DSG3P32926 999 aa17.52■□□□□ 0.4
LINC00648-203ENST00000556923 ZNF219Q9P2Y4 722 aaPredicted RBP17.5■□□□□ 0.39
LINC00648-203ENST00000556923 ATF5Q9Y2D1 282 aaPredicted RBP17.37■□□□□ 0.37
LINC00648-203ENST00000556923 ABCB7O75027 752 aa17.36■□□□□ 0.37
LINC00648-203ENST00000556923 EHMT2Q96KQ7 1210 aa17.32■□□□□ 0.36
LINC00648-203ENST00000556923 CSRNP3Q8WYN3 585 aa17.31■□□□□ 0.36
LINC00648-203ENST00000556923 ATXN8OSP0DMR3 200 aa17.22■□□□□ 0.35
LINC00648-203ENST00000556923 POLA2Q14181 598 aa17.17■□□□□ 0.34
LINC00648-203ENST00000556923 ZBTB12Q9Y330 459 aaPredicted RBP16.82■□□□□ 0.28
LINC00648-203ENST00000556923 RBM42Q9BTD8 480 aaKnown RBP16.67■□□□□ 0.26
LINC00648-203ENST00000556923 OSCARQ8IYS5 282 aa16.62■□□□□ 0.25
LINC00648-203ENST00000556923 FBLN2P98095 1184 aa16.6■□□□□ 0.25
LINC00648-203ENST00000556923 MKRN4PQ13434 485 aaPredicted RBP16.59■□□□□ 0.25
LINC00648-203ENST00000556923 AKT1S1Q96B36 256 aa16.39■□□□□ 0.21
LINC00648-203ENST00000556923 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
LINC00648-203ENST00000556923 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
LINC00648-203ENST00000556923 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
LINC00648-203ENST00000556923 REM2Q8IYK8 340 aaPredicted RBP16.25■□□□□ 0.19
LINC00648-203ENST00000556923 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
LINC00648-203ENST00000556923 SSUH2Q9Y2M2 353 aa16.21■□□□□ 0.19
LINC00648-203ENST00000556923 CHRDL2Q6WN34 429 aa16.15■□□□□ 0.18
LINC00648-203ENST00000556923 POTEHQ6S545 545 aa16.09■□□□□ 0.17
LINC00648-203ENST00000556923 PITPNM1O00562 1244 aa16.08■□□□□ 0.16
LINC00648-203ENST00000556923 PABPN1Q86U42 306 aaKnown RBP eCLIP16.02■□□□□ 0.16
LINC00648-203ENST00000556923 SPDYE4A6NLX3 237 aa16■□□□□ 0.15
LINC00648-203ENST00000556923 SPDYE1Q8NFV5 336 aaPredicted RBP15.95■□□□□ 0.14
LINC00648-203ENST00000556923 CLEC11AQ9Y240 323 aa15.92■□□□□ 0.14
LINC00648-203ENST00000556923 PIP4P2Q8N4L2 257 aa15.87■□□□□ 0.13
LINC00648-203ENST00000556923 FXR2P51116 673 aaKnown RBP eCLIP15.85■□□□□ 0.13
LINC00648-203ENST00000556923 PRR29P0C7W0 189 aa15.71■□□□□ 0.11
LINC00648-203ENST00000556923 PROM2Q8N271 834 aa15.7■□□□□ 0.1
LINC00648-203ENST00000556923 PRKAR2AP13861 404 aaKnown RBP15.66■□□□□ 0.1
LINC00648-203ENST00000556923 FKBP8Q14318 412 aa15.66■□□□□ 0.1
LINC00648-203ENST00000556923 STAG3Q9UJ98 1225 aa15.64■□□□□ 0.09
LINC00648-203ENST00000556923 CHADLQ6NUI6 762 aa15.6■□□□□ 0.09
LINC00648-203ENST00000556923 CREBZFQ9NS37 354 aa15.46■□□□□ 0.07
LINC00648-203ENST00000556923 HAX1O00165 279 aa15.45■□□□□ 0.06
LINC00648-203ENST00000556923 FARP1Q9Y4F1 1045 aaPredicted RBP15.39■□□□□ 0.05
LINC00648-203ENST00000556923 EVX2Q03828 476 aa15.34■□□□□ 0.05
LINC00648-203ENST00000556923 C19orf67A6NJJ6 358 aa15.33■□□□□ 0.04
LINC00648-203ENST00000556923 SP7Q8TDD2 431 aaPredicted RBP15.28■□□□□ 0.04
LINC00648-203ENST00000556923 MNX1P50219 401 aaPredicted RBP15.26■□□□□ 0.03
LINC00648-203ENST00000556923 MIER1Q8N108 512 aa15.2■□□□□ 0.02
LINC00648-203ENST00000556923 CD44P16070 742 aaKnown RBP15.19■□□□□ 0.02
LINC00648-203ENST00000556923 FBXO3Q9UK99 471 aa15.17■□□□□ 0.02
LINC00648-203ENST00000556923 NPM1P06748 294 aaKnown RBP eCLIP15.14■□□□□ 0.01
LINC00648-203ENST00000556923 PLCD3Q8N3E9 789 aa15.13■□□□□ 0.01
LINC00648-203ENST00000556923 PLEKHG5O94827 1062 aa15.11■□□□□ 0.01
LINC00648-203ENST00000556923 ZRANB1Q9UGI0 708 aa15.04■□□□□ -0
LINC00648-203ENST00000556923 VASPP50552 380 aaPredicted RBP15.01□□□□□ -0.01
LINC00648-203ENST00000556923 GABBR2O75899 941 aa14.99□□□□□ -0.01
LINC00648-203ENST00000556923 PAK3O75914 559 aaPredicted RBP14.98□□□□□ -0.01
LINC00648-203ENST00000556923 ZNF579Q8NAF0 562 aaKnown RBP14.98□□□□□ -0.01
LINC00648-203ENST00000556923 ZBTB47Q9UFB7 747 aaPredicted RBP14.97□□□□□ -0.01
LINC00648-203ENST00000556923 RASEFQ8IZ41 740 aa14.92□□□□□ -0.02
LINC00648-203ENST00000556923 TSPYL2Q9H2G4 693 aaPredicted RBP14.91□□□□□ -0.02
LINC00648-203ENST00000556923 PHF12Q96QT6 1004 aa14.89□□□□□ -0.03
LINC00648-203ENST00000556923 NUBP1P53384 320 aa14.88□□□□□ -0.03
LINC00648-203ENST00000556923 CLCN6P51797 869 aa14.85□□□□□ -0.03
LINC00648-203ENST00000556923 CCDC61Q9Y6R9 512 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms