RNA–Protein interactions for RNA: ENST00000556827.1

HIF1A-209, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 2

Gene HIF1A, Length 752 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-209ENST00000556827 AEBP2Q6ZN18 517 aaPredicted RBP30.08■■■□□ 2.41
HIF1A-209ENST00000556827 CHIC1Q5VXU3 224 aa28.98■■■□□ 2.23
HIF1A-209ENST00000556827 SENP3Q9H4L4 574 aaPredicted RBP25.66■■□□□ 1.7
HIF1A-209ENST00000556827 PHF23Q9BUL5 403 aaPredicted RBP25.4■■□□□ 1.66
HIF1A-209ENST00000556827 FOXD1Q16676 465 aa23.82■■□□□ 1.4
HIF1A-209ENST00000556827 PLPPR3Q6T4P5 718 aa23.38■■□□□ 1.33
HIF1A-209ENST00000556827 ADRA2BP18089 450 aa22.56■■□□□ 1.2
HIF1A-209ENST00000556827 PPP6R1Q9UPN7 881 aa22.56■■□□□ 1.2
HIF1A-209ENST00000556827 PIAS4Q8N2W9 510 aaPredicted RBP22.42■■□□□ 1.18
HIF1A-209ENST00000556827 MSH5O43196 834 aa22.19■■□□□ 1.14
HIF1A-209ENST00000556827 POTEDQ86YR6 584 aa20.93■□□□□ 0.94
HIF1A-209ENST00000556827 SCAF1Q9H7N4 1312 aaKnown RBP20.68■□□□□ 0.9
HIF1A-209ENST00000556827 MAPK8IP2Q13387 824 aaPredicted RBP20.58■□□□□ 0.89
HIF1A-209ENST00000556827 PPP4R3CPQ6ZMV5 832 aa20.53■□□□□ 0.88
HIF1A-209ENST00000556827 DMRT2Q9Y5R5 561 aa20.38■□□□□ 0.85
HIF1A-209ENST00000556827 CNKSR2Q8WXI2 1034 aa20.05■□□□□ 0.8
HIF1A-209ENST00000556827 NCBP3Q53F19 620 aaKnown RBP19.91■□□□□ 0.78
HIF1A-209ENST00000556827 HOXD11P31277 338 aaPredicted RBP19.77■□□□□ 0.76
HIF1A-209ENST00000556827 RNF216Q9NWF9 866 aaPredicted RBP19.76■□□□□ 0.75
HIF1A-209ENST00000556827 DCAF8L1A6NGE4 600 aa19.64■□□□□ 0.73
HIF1A-209ENST00000556827 NPM3O75607 178 aaKnown RBP19.56■□□□□ 0.72
HIF1A-209ENST00000556827 KCNA4P22459 653 aa19.56■□□□□ 0.72
HIF1A-209ENST00000556827 DNAJC5BQ9UF47 199 aa18.98■□□□□ 0.63
HIF1A-209ENST00000556827 RNF39Q9H2S5 420 aa18.94■□□□□ 0.62
HIF1A-209ENST00000556827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.93■□□□□ 0.62
HIF1A-209ENST00000556827 CACNB1Q02641 598 aaPredicted RBP18.82■□□□□ 0.6
HIF1A-209ENST00000556827 C1QBPQ07021 282 aaKnown RBP18.7■□□□□ 0.58
HIF1A-209ENST00000556827 SLC4A1APQ9BWU0 796 aaKnown RBP18.59■□□□□ 0.57
HIF1A-209ENST00000556827 SLC4A2P04920 1241 aa18.55■□□□□ 0.56
HIF1A-209ENST00000556827 U3KPZ7 1027 aaPredicted RBP18.51■□□□□ 0.55
HIF1A-209ENST00000556827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.19■□□□□ 0.5
HIF1A-209ENST00000556827 HNRNPUL2Q1KMD3 747 aaKnown RBP18.19■□□□□ 0.5
HIF1A-209ENST00000556827 FOXD4L1Q9NU39 408 aa18.15■□□□□ 0.5
HIF1A-209ENST00000556827 CAPN15O75808 1086 aa18.14■□□□□ 0.49
HIF1A-209ENST00000556827 SPINK5Q9NQ38 1064 aaPredicted RBP18.14■□□□□ 0.49
HIF1A-209ENST00000556827 MYCNP04198 464 aaPredicted RBP18.12■□□□□ 0.49
HIF1A-209ENST00000556827 APLP2Q06481 763 aa18.12■□□□□ 0.49
HIF1A-209ENST00000556827 SAMD1Q6SPF0 538 aaPredicted RBP18.1■□□□□ 0.49
HIF1A-209ENST00000556827 ZBTB22O15209 634 aa17.96■□□□□ 0.47
HIF1A-209ENST00000556827 TRHP20396 242 aaPredicted RBP17.95■□□□□ 0.46
HIF1A-209ENST00000556827 ZNF219Q9P2Y4 722 aaPredicted RBP17.92■□□□□ 0.46
HIF1A-209ENST00000556827 DSG3P32926 999 aa17.87■□□□□ 0.45
HIF1A-209ENST00000556827 ABCB7O75027 752 aa17.74■□□□□ 0.43
HIF1A-209ENST00000556827 ATF5Q9Y2D1 282 aaPredicted RBP17.62■□□□□ 0.41
HIF1A-209ENST00000556827 EHMT2Q96KQ7 1210 aa17.6■□□□□ 0.41
HIF1A-209ENST00000556827 ATXN8OSP0DMR3 200 aa17.53■□□□□ 0.4
HIF1A-209ENST00000556827 POLA2Q14181 598 aa17.52■□□□□ 0.4
HIF1A-209ENST00000556827 CSRNP3Q8WYN3 585 aa17.5■□□□□ 0.39
HIF1A-209ENST00000556827 ZBTB12Q9Y330 459 aaPredicted RBP17.24■□□□□ 0.35
HIF1A-209ENST00000556827 RBM42Q9BTD8 480 aaKnown RBP17.1■□□□□ 0.33
HIF1A-209ENST00000556827 FBLN2P98095 1184 aa17■□□□□ 0.31
HIF1A-209ENST00000556827 OSCARQ8IYS5 282 aa16.97■□□□□ 0.31
HIF1A-209ENST00000556827 MKRN4PQ13434 485 aaPredicted RBP16.83■□□□□ 0.28
HIF1A-209ENST00000556827 AKT1S1Q96B36 256 aa16.76■□□□□ 0.27
HIF1A-209ENST00000556827 SPDYE2BA6NHP3 402 aa16.71■□□□□ 0.27
HIF1A-209ENST00000556827 SPDYE6P0CI01 402 aa16.71■□□□□ 0.27
HIF1A-209ENST00000556827 SPDYE2Q495Y8 402 aa16.71■□□□□ 0.27
HIF1A-209ENST00000556827 REM2Q8IYK8 340 aaPredicted RBP16.6■□□□□ 0.25
HIF1A-209ENST00000556827 ZNF692Q9BU19 519 aaPredicted RBP16.59■□□□□ 0.25
HIF1A-209ENST00000556827 CHRDL2Q6WN34 429 aa16.55■□□□□ 0.24
HIF1A-209ENST00000556827 POTEHQ6S545 545 aa16.51■□□□□ 0.23
HIF1A-209ENST00000556827 SSUH2Q9Y2M2 353 aa16.5■□□□□ 0.23
HIF1A-209ENST00000556827 PITPNM1O00562 1244 aa16.42■□□□□ 0.22
HIF1A-209ENST00000556827 PABPN1Q86U42 306 aaKnown RBP eCLIP16.36■□□□□ 0.21
HIF1A-209ENST00000556827 SPDYE1Q8NFV5 336 aaPredicted RBP16.34■□□□□ 0.21
HIF1A-209ENST00000556827 CLEC11AQ9Y240 323 aa16.31■□□□□ 0.2
HIF1A-209ENST00000556827 SPDYE4A6NLX3 237 aa16.3■□□□□ 0.2
HIF1A-209ENST00000556827 PIP4P2Q8N4L2 257 aa16.22■□□□□ 0.19
HIF1A-209ENST00000556827 FXR2P51116 673 aaKnown RBP eCLIP16.16■□□□□ 0.18
HIF1A-209ENST00000556827 PRR29P0C7W0 189 aa16.08■□□□□ 0.16
HIF1A-209ENST00000556827 PRKAR2AP13861 404 aaKnown RBP16.02■□□□□ 0.16
HIF1A-209ENST00000556827 STAG3Q9UJ98 1225 aa16■□□□□ 0.15
HIF1A-209ENST00000556827 FKBP8Q14318 412 aa15.92■□□□□ 0.14
HIF1A-209ENST00000556827 CHADLQ6NUI6 762 aa15.92■□□□□ 0.14
HIF1A-209ENST00000556827 PROM2Q8N271 834 aa15.89■□□□□ 0.13
HIF1A-209ENST00000556827 HAX1O00165 279 aa15.86■□□□□ 0.13
HIF1A-209ENST00000556827 CREBZFQ9NS37 354 aa15.72■□□□□ 0.11
HIF1A-209ENST00000556827 FARP1Q9Y4F1 1045 aaPredicted RBP15.72■□□□□ 0.11
HIF1A-209ENST00000556827 SP7Q8TDD2 431 aaPredicted RBP15.67■□□□□ 0.1
HIF1A-209ENST00000556827 C19orf67A6NJJ6 358 aa15.63■□□□□ 0.09
HIF1A-209ENST00000556827 EVX2Q03828 476 aa15.61■□□□□ 0.09
HIF1A-209ENST00000556827 CD44P16070 742 aaKnown RBP15.55■□□□□ 0.08
HIF1A-209ENST00000556827 PLEKHG5O94827 1062 aa15.53■□□□□ 0.08
HIF1A-209ENST00000556827 MIER1Q8N108 512 aa15.52■□□□□ 0.08
HIF1A-209ENST00000556827 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
HIF1A-209ENST00000556827 PLCD3Q8N3E9 789 aa15.48■□□□□ 0.07
HIF1A-209ENST00000556827 FBXO3Q9UK99 471 aa15.48■□□□□ 0.07
HIF1A-209ENST00000556827 MNX1P50219 401 aaPredicted RBP15.47■□□□□ 0.07
HIF1A-209ENST00000556827 PAK3O75914 559 aaPredicted RBP15.4■□□□□ 0.06
HIF1A-209ENST00000556827 ZRANB1Q9UGI0 708 aa15.39■□□□□ 0.05
HIF1A-209ENST00000556827 ZBTB47Q9UFB7 747 aaPredicted RBP15.33■□□□□ 0.04
HIF1A-209ENST00000556827 GABBR2O75899 941 aa15.32■□□□□ 0.04
HIF1A-209ENST00000556827 ZNF579Q8NAF0 562 aaKnown RBP15.3■□□□□ 0.04
HIF1A-209ENST00000556827 VASPP50552 380 aaPredicted RBP15.26■□□□□ 0.03
HIF1A-209ENST00000556827 TSPYL2Q9H2G4 693 aaPredicted RBP15.25■□□□□ 0.03
HIF1A-209ENST00000556827 CLCN6P51797 869 aa15.22■□□□□ 0.03
HIF1A-209ENST00000556827 PHF12Q96QT6 1004 aa15.21■□□□□ 0.03
HIF1A-209ENST00000556827 RASEFQ8IZ41 740 aa15.18■□□□□ 0.02
HIF1A-209ENST00000556827 KLHL34Q8N239 644 aa15.16■□□□□ 0.02
HIF1A-209ENST00000556827 NUBP1P53384 320 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms