RNA–Protein interactions for RNA: ENST00000556622.1

CPSF2-205, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 5

Gene CPSF2, Length 469 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-205ENST00000556622 AEBP2Q6ZN18 517 aaPredicted RBP27.32■■□□□ 1.96
CPSF2-205ENST00000556622 CHIC1Q5VXU3 224 aa25.36■■□□□ 1.65
CPSF2-205ENST00000556622 SENP3Q9H4L4 574 aaPredicted RBP23.23■■□□□ 1.31
CPSF2-205ENST00000556622 PHF23Q9BUL5 403 aaPredicted RBP22.92■■□□□ 1.26
CPSF2-205ENST00000556622 FOXD1Q16676 465 aa21.82■■□□□ 1.08
CPSF2-205ENST00000556622 POTEDQ86YR6 584 aa20.98■□□□□ 0.95
CPSF2-205ENST00000556622 MSH5O43196 834 aa20.49■□□□□ 0.87
CPSF2-205ENST00000556622 PIAS4Q8N2W9 510 aaPredicted RBP20.22■□□□□ 0.83
CPSF2-205ENST00000556622 PPP6R1Q9UPN7 881 aa20.06■□□□□ 0.8
CPSF2-205ENST00000556622 PLPPR3Q6T4P5 718 aa19.97■□□□□ 0.79
CPSF2-205ENST00000556622 ADRA2BP18089 450 aa19.95■□□□□ 0.78
CPSF2-205ENST00000556622 MAPK8IP2Q13387 824 aaPredicted RBP18.51■□□□□ 0.55
CPSF2-205ENST00000556622 DMRT2Q9Y5R5 561 aa18.38■□□□□ 0.53
CPSF2-205ENST00000556622 SCAF1Q9H7N4 1312 aaKnown RBP18.06■□□□□ 0.48
CPSF2-205ENST00000556622 CACNB1Q02641 598 aaPredicted RBP17.95■□□□□ 0.46
CPSF2-205ENST00000556622 DCAF8L1A6NGE4 600 aa17.68■□□□□ 0.42
CPSF2-205ENST00000556622 RNF39Q9H2S5 420 aa17.5■□□□□ 0.39
CPSF2-205ENST00000556622 HOXD11P31277 338 aaPredicted RBP17.49■□□□□ 0.39
CPSF2-205ENST00000556622 PPP4R3CPQ6ZMV5 832 aa17.49■□□□□ 0.39
CPSF2-205ENST00000556622 CNKSR2Q8WXI2 1034 aa17.23■□□□□ 0.35
CPSF2-205ENST00000556622 RNF216Q9NWF9 866 aaPredicted RBP17.21■□□□□ 0.35
CPSF2-205ENST00000556622 C1QBPQ07021 282 aaKnown RBP17.15■□□□□ 0.34
CPSF2-205ENST00000556622 DNAJC5BQ9UF47 199 aa16.88■□□□□ 0.29
CPSF2-205ENST00000556622 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.67■□□□□ 0.26
CPSF2-205ENST00000556622 NCBP3Q53F19 620 aaKnown RBP16.56■□□□□ 0.24
CPSF2-205ENST00000556622 NPM3O75607 178 aaKnown RBP16.45■□□□□ 0.22
CPSF2-205ENST00000556622 U3KPZ7 1027 aaPredicted RBP16.32■□□□□ 0.2
CPSF2-205ENST00000556622 POTEHQ6S545 545 aa16.31■□□□□ 0.2
CPSF2-205ENST00000556622 SPINK5Q9NQ38 1064 aaPredicted RBP16.27■□□□□ 0.2
CPSF2-205ENST00000556622 DSG3P32926 999 aa16.24■□□□□ 0.19
CPSF2-205ENST00000556622 CAPN15O75808 1086 aa16.2■□□□□ 0.18
CPSF2-205ENST00000556622 SLC4A2P04920 1241 aa15.87■□□□□ 0.13
CPSF2-205ENST00000556622 ABCB7O75027 752 aa15.84■□□□□ 0.13
CPSF2-205ENST00000556622 TRHP20396 242 aaPredicted RBP15.83■□□□□ 0.12
CPSF2-205ENST00000556622 KCNA4P22459 653 aa15.72■□□□□ 0.11
CPSF2-205ENST00000556622 ZNF219Q9P2Y4 722 aaPredicted RBP15.7■□□□□ 0.1
CPSF2-205ENST00000556622 APLP2Q06481 763 aa15.61■□□□□ 0.09
CPSF2-205ENST00000556622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.51■□□□□ 0.07
CPSF2-205ENST00000556622 HNRNPUL2Q1KMD3 747 aaKnown RBP15.51■□□□□ 0.07
CPSF2-205ENST00000556622 SAMD1Q6SPF0 538 aaPredicted RBP15.45■□□□□ 0.06
CPSF2-205ENST00000556622 RBM42Q9BTD8 480 aaKnown RBP15.39■□□□□ 0.05
CPSF2-205ENST00000556622 CHRDL2Q6WN34 429 aa15.35■□□□□ 0.05
CPSF2-205ENST00000556622 POLA2Q14181 598 aa15.28■□□□□ 0.04
CPSF2-205ENST00000556622 MYCNP04198 464 aaPredicted RBP15.15■□□□□ 0.02
CPSF2-205ENST00000556622 SP7Q8TDD2 431 aaPredicted RBP15.04■□□□□ -0
CPSF2-205ENST00000556622 ATF5Q9Y2D1 282 aaPredicted RBP14.99□□□□□ -0.01
CPSF2-205ENST00000556622 AKT1S1Q96B36 256 aa14.97□□□□□ -0.01
CPSF2-205ENST00000556622 PIP4P2Q8N4L2 257 aa14.91□□□□□ -0.02
CPSF2-205ENST00000556622 REM2Q8IYK8 340 aaPredicted RBP14.89□□□□□ -0.03
CPSF2-205ENST00000556622 OSCARQ8IYS5 282 aa14.86□□□□□ -0.03
CPSF2-205ENST00000556622 ZBTB12Q9Y330 459 aaPredicted RBP14.81□□□□□ -0.04
CPSF2-205ENST00000556622 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
CPSF2-205ENST00000556622 FOXD4L1Q9NU39 408 aa14.75□□□□□ -0.05
CPSF2-205ENST00000556622 HAX1O00165 279 aa14.74□□□□□ -0.05
CPSF2-205ENST00000556622 FXR2P51116 673 aaKnown RBP eCLIP14.7□□□□□ -0.06
CPSF2-205ENST00000556622 SLC4A1APQ9BWU0 796 aaKnown RBP14.68□□□□□ -0.06
CPSF2-205ENST00000556622 EVX2Q03828 476 aa14.63□□□□□ -0.07
CPSF2-205ENST00000556622 ZBTB22O15209 634 aa14.5□□□□□ -0.09
CPSF2-205ENST00000556622 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
CPSF2-205ENST00000556622 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
CPSF2-205ENST00000556622 PRKAR2AP13861 404 aaKnown RBP14.36□□□□□ -0.11
CPSF2-205ENST00000556622 SPDYE2Q495Y8 402 aa14.36□□□□□ -0.11
CPSF2-205ENST00000556622 CLEC11AQ9Y240 323 aa14.31□□□□□ -0.12
CPSF2-205ENST00000556622 ATXN8OSP0DMR3 200 aa14.27□□□□□ -0.13
CPSF2-205ENST00000556622 FBLN2P98095 1184 aa14.27□□□□□ -0.13
CPSF2-205ENST00000556622 C19orf67A6NJJ6 358 aa14.26□□□□□ -0.13
CPSF2-205ENST00000556622 MKRN4PQ13434 485 aaPredicted RBP14.25□□□□□ -0.13
CPSF2-205ENST00000556622 SPDYE1Q8NFV5 336 aaPredicted RBP14.23□□□□□ -0.13
CPSF2-205ENST00000556622 GABBR2O75899 941 aa14.19□□□□□ -0.14
CPSF2-205ENST00000556622 SSUH2Q9Y2M2 353 aa14.16□□□□□ -0.14
CPSF2-205ENST00000556622 CHADLQ6NUI6 762 aa14.15□□□□□ -0.14
CPSF2-205ENST00000556622 ZNF692Q9BU19 519 aaPredicted RBP14.14□□□□□ -0.15
CPSF2-205ENST00000556622 LHX8Q68G74 356 aa14.1□□□□□ -0.15
CPSF2-205ENST00000556622 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
CPSF2-205ENST00000556622 EHMT2Q96KQ7 1210 aa13.96□□□□□ -0.17
CPSF2-205ENST00000556622 PRR29P0C7W0 189 aa13.95□□□□□ -0.18
CPSF2-205ENST00000556622 POTEIP0CG38 1075 aa13.95□□□□□ -0.18
CPSF2-205ENST00000556622 PABPN1Q86U42 306 aaKnown RBP eCLIP13.95□□□□□ -0.18
CPSF2-205ENST00000556622 CD44P16070 742 aaKnown RBP13.87□□□□□ -0.19
CPSF2-205ENST00000556622 FARP1Q9Y4F1 1045 aaPredicted RBP13.81□□□□□ -0.2
CPSF2-205ENST00000556622 PLSCR2Q9NRY7 297 aa13.65□□□□□ -0.22
CPSF2-205ENST00000556622 DCBLD2Q96PD2 775 aa13.64□□□□□ -0.23
CPSF2-205ENST00000556622 CLCN6P51797 869 aa13.6□□□□□ -0.23
CPSF2-205ENST00000556622 ZNF579Q8NAF0 562 aaKnown RBP13.6□□□□□ -0.23
CPSF2-205ENST00000556622 ZRANB1Q9UGI0 708 aa13.6□□□□□ -0.23
CPSF2-205ENST00000556622 GALR2O43603 387 aaPredicted RBP13.55□□□□□ -0.24
CPSF2-205ENST00000556622 CREBZFQ9NS37 354 aa13.55□□□□□ -0.24
CPSF2-205ENST00000556622 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
CPSF2-205ENST00000556622 POTEB2H3BUK9 544 aa13.49□□□□□ -0.25
CPSF2-205ENST00000556622 PHF12Q96QT6 1004 aa13.42□□□□□ -0.26
CPSF2-205ENST00000556622 PELP1Q8IZL8 1130 aaKnown RBP13.36□□□□□ -0.27
CPSF2-205ENST00000556622 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
CPSF2-205ENST00000556622 POTEMA6NI47 508 aa13.32□□□□□ -0.28
CPSF2-205ENST00000556622 PAK3O75914 559 aaPredicted RBP13.27□□□□□ -0.29
CPSF2-205ENST00000556622 POTEGQ6S5H5 508 aa13.27□□□□□ -0.29
CPSF2-205ENST00000556622 MNX1P50219 401 aaPredicted RBP13.26□□□□□ -0.29
CPSF2-205ENST00000556622 SPDYE4A6NLX3 237 aa13.24□□□□□ -0.29
CPSF2-205ENST00000556622 POTEJP0CG39 1038 aa13.22□□□□□ -0.29
CPSF2-205ENST00000556622 MS4A3Q96HJ5 214 aa13.2□□□□□ -0.3
CPSF2-205ENST00000556622 NISCHQ9Y2I1 1504 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms