RNA–Protein interactions for RNA: ENST00000556516.1

PCNX1-212, Transcript of pecanex 1, humanhuman

TSL 3

Gene PCNX1, Length 583 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-212ENST00000556516 AEBP2Q6ZN18 517 aaPredicted RBP22.61■■□□□ 1.21
PCNX1-212ENST00000556516 CHIC1Q5VXU3 224 aa22.21■■□□□ 1.15
PCNX1-212ENST00000556516 PHF23Q9BUL5 403 aaPredicted RBP19.64■□□□□ 0.73
PCNX1-212ENST00000556516 SENP3Q9H4L4 574 aaPredicted RBP18.99■□□□□ 0.63
PCNX1-212ENST00000556516 PLPPR3Q6T4P5 718 aa18.1■□□□□ 0.49
PCNX1-212ENST00000556516 FOXD1Q16676 465 aa17.71■□□□□ 0.43
PCNX1-212ENST00000556516 ADRA2BP18089 450 aa17.29■□□□□ 0.36
PCNX1-212ENST00000556516 PPP6R1Q9UPN7 881 aa17.28■□□□□ 0.36
PCNX1-212ENST00000556516 PIAS4Q8N2W9 510 aaPredicted RBP16.75■□□□□ 0.27
PCNX1-212ENST00000556516 MSH5O43196 834 aa16.09■□□□□ 0.17
PCNX1-212ENST00000556516 PPP4R3CPQ6ZMV5 832 aa16.05■□□□□ 0.16
PCNX1-212ENST00000556516 KCNA4P22459 653 aa16.03■□□□□ 0.16
PCNX1-212ENST00000556516 MAPK8IP2Q13387 824 aaPredicted RBP15.64■□□□□ 0.09
PCNX1-212ENST00000556516 SCAF1Q9H7N4 1312 aaKnown RBP15.61■□□□□ 0.09
PCNX1-212ENST00000556516 NCBP3Q53F19 620 aaKnown RBP15.59■□□□□ 0.09
PCNX1-212ENST00000556516 NPM3O75607 178 aaKnown RBP15.49■□□□□ 0.07
PCNX1-212ENST00000556516 CNKSR2Q8WXI2 1034 aa15.47■□□□□ 0.07
PCNX1-212ENST00000556516 SLC4A1APQ9BWU0 796 aaKnown RBP15.25■□□□□ 0.03
PCNX1-212ENST00000556516 EHMT2Q96KQ7 1210 aa15.22■□□□□ 0.03
PCNX1-212ENST00000556516 DMRT2Q9Y5R5 561 aa15.22■□□□□ 0.03
PCNX1-212ENST00000556516 RNF216Q9NWF9 866 aaPredicted RBP15.1■□□□□ 0.01
PCNX1-212ENST00000556516 HOXD11P31277 338 aaPredicted RBP14.98□□□□□ -0.01
PCNX1-212ENST00000556516 CSRNP3Q8WYN3 585 aa14.85□□□□□ -0.03
PCNX1-212ENST00000556516 ZBTB22O15209 634 aa14.79□□□□□ -0.04
PCNX1-212ENST00000556516 DNAJC5BQ9UF47 199 aa14.77□□□□□ -0.05
PCNX1-212ENST00000556516 DCAF8L1A6NGE4 600 aa14.68□□□□□ -0.06
PCNX1-212ENST00000556516 SLC4A2P04920 1241 aa14.58□□□□□ -0.08
PCNX1-212ENST00000556516 FOXD4L1Q9NU39 408 aa14.58□□□□□ -0.08
PCNX1-212ENST00000556516 POTEDQ86YR6 584 aa14.35□□□□□ -0.11
PCNX1-212ENST00000556516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.34□□□□□ -0.11
PCNX1-212ENST00000556516 MYCNP04198 464 aaPredicted RBP14.23□□□□□ -0.13
PCNX1-212ENST00000556516 U3KPZ7 1027 aaPredicted RBP14.17□□□□□ -0.14
PCNX1-212ENST00000556516 ATF5Q9Y2D1 282 aaPredicted RBP13.99□□□□□ -0.17
PCNX1-212ENST00000556516 ATXN8OSP0DMR3 200 aa13.94□□□□□ -0.18
PCNX1-212ENST00000556516 SAMD1Q6SPF0 538 aaPredicted RBP13.91□□□□□ -0.18
PCNX1-212ENST00000556516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.89□□□□□ -0.19
PCNX1-212ENST00000556516 HNRNPUL2Q1KMD3 747 aaKnown RBP13.89□□□□□ -0.19
PCNX1-212ENST00000556516 RNF39Q9H2S5 420 aa13.88□□□□□ -0.19
PCNX1-212ENST00000556516 SPINK5Q9NQ38 1064 aaPredicted RBP13.75□□□□□ -0.21
PCNX1-212ENST00000556516 TRHP20396 242 aaPredicted RBP13.66□□□□□ -0.22
PCNX1-212ENST00000556516 APLP2Q06481 763 aa13.66□□□□□ -0.22
PCNX1-212ENST00000556516 C1QBPQ07021 282 aaKnown RBP13.65□□□□□ -0.22
PCNX1-212ENST00000556516 CAPN15O75808 1086 aa13.64□□□□□ -0.23
PCNX1-212ENST00000556516 ZNF219Q9P2Y4 722 aaPredicted RBP13.64□□□□□ -0.23
PCNX1-212ENST00000556516 ABCB7O75027 752 aa13.48□□□□□ -0.25
PCNX1-212ENST00000556516 POLA2Q14181 598 aa13.45□□□□□ -0.26
PCNX1-212ENST00000556516 FKBP8Q14318 412 aa13.43□□□□□ -0.26
PCNX1-212ENST00000556516 CACNB1Q02641 598 aaPredicted RBP13.37□□□□□ -0.27
PCNX1-212ENST00000556516 MKRN4PQ13434 485 aaPredicted RBP13.35□□□□□ -0.27
PCNX1-212ENST00000556516 DSG3P32926 999 aa13.32□□□□□ -0.28
PCNX1-212ENST00000556516 FBLN2P98095 1184 aa13.22□□□□□ -0.29
PCNX1-212ENST00000556516 SPDYE4A6NLX3 237 aa13.12□□□□□ -0.31
PCNX1-212ENST00000556516 ZBTB12Q9Y330 459 aaPredicted RBP13.1□□□□□ -0.31
PCNX1-212ENST00000556516 OSCARQ8IYS5 282 aa13.04□□□□□ -0.32
PCNX1-212ENST00000556516 ZNF692Q9BU19 519 aaPredicted RBP12.88□□□□□ -0.35
PCNX1-212ENST00000556516 PROM2Q8N271 834 aa12.87□□□□□ -0.35
PCNX1-212ENST00000556516 SPDYE2BA6NHP3 402 aa12.82□□□□□ -0.36
PCNX1-212ENST00000556516 SPDYE6P0CI01 402 aa12.82□□□□□ -0.36
PCNX1-212ENST00000556516 SPDYE2Q495Y8 402 aa12.82□□□□□ -0.36
PCNX1-212ENST00000556516 SSUH2Q9Y2M2 353 aa12.78□□□□□ -0.36
PCNX1-212ENST00000556516 PABPN1Q86U42 306 aaKnown RBP eCLIP12.75□□□□□ -0.37
PCNX1-212ENST00000556516 FBXO3Q9UK99 471 aa12.72□□□□□ -0.37
PCNX1-212ENST00000556516 RTN4Q9NQC3 1192 aaKnown RBP12.68□□□□□ -0.38
PCNX1-212ENST00000556516 VASPP50552 380 aaPredicted RBP12.64□□□□□ -0.39
PCNX1-212ENST00000556516 RBM42Q9BTD8 480 aaKnown RBP12.57□□□□□ -0.4
PCNX1-212ENST00000556516 AMER1Q5JTC6 1135 aaPredicted RBP12.55□□□□□ -0.4
PCNX1-212ENST00000556516 IFNLR1Q8IU57 520 aaPredicted RBP12.53□□□□□ -0.4
PCNX1-212ENST00000556516 AKT1S1Q96B36 256 aa12.5□□□□□ -0.41
PCNX1-212ENST00000556516 REM2Q8IYK8 340 aaPredicted RBP12.46□□□□□ -0.41
PCNX1-212ENST00000556516 STAG3Q9UJ98 1225 aa12.45□□□□□ -0.42
PCNX1-212ENST00000556516 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
PCNX1-212ENST00000556516 PLCD3Q8N3E9 789 aa12.43□□□□□ -0.42
PCNX1-212ENST00000556516 MIER1Q8N108 512 aa12.41□□□□□ -0.42
PCNX1-212ENST00000556516 KLHL34Q8N239 644 aa12.39□□□□□ -0.43
PCNX1-212ENST00000556516 SPDYE1Q8NFV5 336 aaPredicted RBP12.39□□□□□ -0.43
PCNX1-212ENST00000556516 PITPNM1O00562 1244 aa12.35□□□□□ -0.43
PCNX1-212ENST00000556516 PRR29P0C7W0 189 aa12.29□□□□□ -0.44
PCNX1-212ENST00000556516 SPOCK2Q92563 424 aa12.27□□□□□ -0.45
PCNX1-212ENST00000556516 CREBZFQ9NS37 354 aa12.23□□□□□ -0.45
PCNX1-212ENST00000556516 PLEKHG5O94827 1062 aa12.22□□□□□ -0.45
PCNX1-212ENST00000556516 PKD2Q13563 968 aa12.2□□□□□ -0.46
PCNX1-212ENST00000556516 CHADLQ6NUI6 762 aa12.17□□□□□ -0.46
PCNX1-212ENST00000556516 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
PCNX1-212ENST00000556516 MNX1P50219 401 aaPredicted RBP12.12□□□□□ -0.47
PCNX1-212ENST00000556516 CIZ1Q9ULV3 898 aaPredicted RBP12.11□□□□□ -0.47
PCNX1-212ENST00000556516 DCAF8L2P0C7V8 631 aa12.09□□□□□ -0.47
PCNX1-212ENST00000556516 ECM2O94769 699 aaPredicted RBP12.07□□□□□ -0.48
PCNX1-212ENST00000556516 NUBP1P53384 320 aa12.07□□□□□ -0.48
PCNX1-212ENST00000556516 CHRDL2Q6WN34 429 aa12.05□□□□□ -0.48
PCNX1-212ENST00000556516 PRKAR2AP13861 404 aaKnown RBP12.03□□□□□ -0.48
PCNX1-212ENST00000556516 RASEFQ8IZ41 740 aa12.01□□□□□ -0.49
PCNX1-212ENST00000556516 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.495e-8■■■■□ 20.5
PCNX1-212ENST00000556516 RGL2O15211 777 aa11.99□□□□□ -0.49
PCNX1-212ENST00000556516 DCAF8Q5TAQ9 597 aa11.99□□□□□ -0.49
PCNX1-212ENST00000556516 PIP4P2Q8N4L2 257 aa11.98□□□□□ -0.49
PCNX1-212ENST00000556516 FARP1Q9Y4F1 1045 aaPredicted RBP11.96□□□□□ -0.49
PCNX1-212ENST00000556516 NPM1P06748 294 aaKnown RBP eCLIP11.93□□□□□ -0.5
PCNX1-212ENST00000556516 FAM212AQ96EL1 285 aa11.93□□□□□ -0.5
PCNX1-212ENST00000556516 GSE1Q14687 1217 aa11.92□□□□□ -0.5
PCNX1-212ENST00000556516 TSPYL2Q9H2G4 693 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms