RNA–Protein interactions for RNA: ENST00000556240.1

GPHN-212, Transcript of gephyrin, humanhuman

TSL 3

Gene GPHN, Length 404 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-212ENST00000556240 AEBP2Q6ZN18 517 aaPredicted RBP23.48■■□□□ 1.35
GPHN-212ENST00000556240 CHIC1Q5VXU3 224 aa22.36■■□□□ 1.17
GPHN-212ENST00000556240 SENP3Q9H4L4 574 aaPredicted RBP20.02■□□□□ 0.8
GPHN-212ENST00000556240 PHF23Q9BUL5 403 aaPredicted RBP19.77■□□□□ 0.76
GPHN-212ENST00000556240 FOXD1Q16676 465 aa18.65■□□□□ 0.58
GPHN-212ENST00000556240 PLPPR3Q6T4P5 718 aa17.91■□□□□ 0.46
GPHN-212ENST00000556240 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
GPHN-212ENST00000556240 PIAS4Q8N2W9 510 aaPredicted RBP17.47■□□□□ 0.39
GPHN-212ENST00000556240 ADRA2BP18089 450 aa17.45■□□□□ 0.38
GPHN-212ENST00000556240 MSH5O43196 834 aa17.43■□□□□ 0.38
GPHN-212ENST00000556240 POTEDQ86YR6 584 aa16.89■□□□□ 0.29
GPHN-212ENST00000556240 MAPK8IP2Q13387 824 aaPredicted RBP16.01■□□□□ 0.15
GPHN-212ENST00000556240 SCAF1Q9H7N4 1312 aaKnown RBP15.96■□□□□ 0.15
GPHN-212ENST00000556240 DMRT2Q9Y5R5 561 aa15.88■□□□□ 0.13
GPHN-212ENST00000556240 PPP4R3CPQ6ZMV5 832 aa15.71■□□□□ 0.11
GPHN-212ENST00000556240 CNKSR2Q8WXI2 1034 aa15.39■□□□□ 0.05
GPHN-212ENST00000556240 HOXD11P31277 338 aaPredicted RBP15.32■□□□□ 0.04
GPHN-212ENST00000556240 DCAF8L1A6NGE4 600 aa15.28■□□□□ 0.04
GPHN-212ENST00000556240 RNF216Q9NWF9 866 aaPredicted RBP15.23■□□□□ 0.03
GPHN-212ENST00000556240 NCBP3Q53F19 620 aaKnown RBP15.13■□□□□ 0.01
GPHN-212ENST00000556240 CACNB1Q02641 598 aaPredicted RBP14.93□□□□□ -0.02
GPHN-212ENST00000556240 NPM3O75607 178 aaKnown RBP14.91□□□□□ -0.02
GPHN-212ENST00000556240 RNF39Q9H2S5 420 aa14.87□□□□□ -0.03
GPHN-212ENST00000556240 DNAJC5BQ9UF47 199 aa14.75□□□□□ -0.05
GPHN-212ENST00000556240 KCNA4P22459 653 aa14.69□□□□□ -0.06
GPHN-212ENST00000556240 C1QBPQ07021 282 aaKnown RBP14.66□□□□□ -0.06
GPHN-212ENST00000556240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
GPHN-212ENST00000556240 U3KPZ7 1027 aaPredicted RBP14.32□□□□□ -0.12
GPHN-212ENST00000556240 SLC4A2P04920 1241 aa14.21□□□□□ -0.13
GPHN-212ENST00000556240 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
GPHN-212ENST00000556240 CAPN15O75808 1086 aa14.08□□□□□ -0.16
GPHN-212ENST00000556240 DSG3P32926 999 aa13.95□□□□□ -0.18
GPHN-212ENST00000556240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.93□□□□□ -0.18
GPHN-212ENST00000556240 APLP2Q06481 763 aa13.93□□□□□ -0.18
GPHN-212ENST00000556240 HNRNPUL2Q1KMD3 747 aaKnown RBP13.93□□□□□ -0.18
GPHN-212ENST00000556240 SLC4A1APQ9BWU0 796 aaKnown RBP13.89□□□□□ -0.19
GPHN-212ENST00000556240 TRHP20396 242 aaPredicted RBP13.88□□□□□ -0.19
GPHN-212ENST00000556240 SAMD1Q6SPF0 538 aaPredicted RBP13.86□□□□□ -0.19
GPHN-212ENST00000556240 ZNF219Q9P2Y4 722 aaPredicted RBP13.84□□□□□ -0.19
GPHN-212ENST00000556240 MYCNP04198 464 aaPredicted RBP13.79□□□□□ -0.2
GPHN-212ENST00000556240 ABCB7O75027 752 aa13.77□□□□□ -0.21
GPHN-212ENST00000556240 FOXD4L1Q9NU39 408 aa13.69□□□□□ -0.22
GPHN-212ENST00000556240 ZBTB22O15209 634 aa13.51□□□□□ -0.25
GPHN-212ENST00000556240 POLA2Q14181 598 aa13.5□□□□□ -0.25
GPHN-212ENST00000556240 ATF5Q9Y2D1 282 aaPredicted RBP13.47□□□□□ -0.25
GPHN-212ENST00000556240 RBM42Q9BTD8 480 aaKnown RBP13.32□□□□□ -0.28
GPHN-212ENST00000556240 POTEHQ6S545 545 aa13.26□□□□□ -0.29
GPHN-212ENST00000556240 ATXN8OSP0DMR3 200 aa13.24□□□□□ -0.29
GPHN-212ENST00000556240 ZBTB12Q9Y330 459 aaPredicted RBP13.24□□□□□ -0.29
GPHN-212ENST00000556240 OSCARQ8IYS5 282 aa13.08□□□□□ -0.32
GPHN-212ENST00000556240 AKT1S1Q96B36 256 aa13.03□□□□□ -0.32
GPHN-212ENST00000556240 CHRDL2Q6WN34 429 aa13.01□□□□□ -0.33
GPHN-212ENST00000556240 FBLN2P98095 1184 aa12.95□□□□□ -0.34
GPHN-212ENST00000556240 CSRNP3Q8WYN3 585 aa12.93□□□□□ -0.34
GPHN-212ENST00000556240 REM2Q8IYK8 340 aaPredicted RBP12.91□□□□□ -0.34
GPHN-212ENST00000556240 EHMT2Q96KQ7 1210 aa12.86□□□□□ -0.35
GPHN-212ENST00000556240 MKRN4PQ13434 485 aaPredicted RBP12.85□□□□□ -0.35
GPHN-212ENST00000556240 SPDYE2BA6NHP3 402 aa12.83□□□□□ -0.36
GPHN-212ENST00000556240 SPDYE6P0CI01 402 aa12.83□□□□□ -0.36
GPHN-212ENST00000556240 SPDYE2Q495Y8 402 aa12.83□□□□□ -0.36
GPHN-212ENST00000556240 PITPNM1O00562 1244 aa12.78□□□□□ -0.36
GPHN-212ENST00000556240 PIP4P2Q8N4L2 257 aa12.71□□□□□ -0.37
GPHN-212ENST00000556240 ZNF692Q9BU19 519 aaPredicted RBP12.7□□□□□ -0.38
GPHN-212ENST00000556240 SSUH2Q9Y2M2 353 aa12.66□□□□□ -0.38
GPHN-212ENST00000556240 FXR2P51116 673 aaKnown RBP eCLIP12.63□□□□□ -0.39
GPHN-212ENST00000556240 SPDYE1Q8NFV5 336 aaPredicted RBP12.59□□□□□ -0.39
GPHN-212ENST00000556240 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
GPHN-212ENST00000556240 PABPN1Q86U42 306 aaKnown RBP eCLIP12.51□□□□□ -0.41
GPHN-212ENST00000556240 HAX1O00165 279 aa12.48□□□□□ -0.41
GPHN-212ENST00000556240 SP7Q8TDD2 431 aaPredicted RBP12.46□□□□□ -0.41
GPHN-212ENST00000556240 PRKAR2AP13861 404 aaKnown RBP12.45□□□□□ -0.42
GPHN-212ENST00000556240 PRR29P0C7W0 189 aa12.38□□□□□ -0.43
GPHN-212ENST00000556240 CHADLQ6NUI6 762 aa12.34□□□□□ -0.43
GPHN-212ENST00000556240 EVX2Q03828 476 aa12.3□□□□□ -0.44
GPHN-212ENST00000556240 SPDYE4A6NLX3 237 aa12.29□□□□□ -0.44
GPHN-212ENST00000556240 C19orf67A6NJJ6 358 aa12.23□□□□□ -0.45
GPHN-212ENST00000556240 STAG3Q9UJ98 1225 aa12.17□□□□□ -0.46
GPHN-212ENST00000556240 FARP1Q9Y4F1 1045 aaPredicted RBP12.14□□□□□ -0.47
GPHN-212ENST00000556240 CD44P16070 742 aaKnown RBP12.07□□□□□ -0.48
GPHN-212ENST00000556240 CREBZFQ9NS37 354 aa12.07□□□□□ -0.48
GPHN-212ENST00000556240 GABBR2O75899 941 aa12.04□□□□□ -0.48
GPHN-212ENST00000556240 PROM2Q8N271 834 aa11.97□□□□□ -0.49
GPHN-212ENST00000556240 ZRANB1Q9UGI0 708 aa11.91□□□□□ -0.5
GPHN-212ENST00000556240 NPM1P06748 294 aaKnown RBP eCLIP11.87□□□□□ -0.51
GPHN-212ENST00000556240 MNX1P50219 401 aaPredicted RBP11.86□□□□□ -0.51
GPHN-212ENST00000556240 ZNF579Q8NAF0 562 aaKnown RBP11.86□□□□□ -0.51
GPHN-212ENST00000556240 CLCN6P51797 869 aa11.85□□□□□ -0.51
GPHN-212ENST00000556240 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
GPHN-212ENST00000556240 POTEIP0CG38 1075 aa11.77□□□□□ -0.53
GPHN-212ENST00000556240 FKBP8Q14318 412 aa11.76□□□□□ -0.53
GPHN-212ENST00000556240 PHF12Q96QT6 1004 aa11.75□□□□□ -0.53
GPHN-212ENST00000556240 DCBLD2Q96PD2 775 aa11.74□□□□□ -0.53
GPHN-212ENST00000556240 GALR2O43603 387 aaPredicted RBP11.73□□□□□ -0.53
GPHN-212ENST00000556240 MIER1Q8N108 512 aa11.72□□□□□ -0.53
GPHN-212ENST00000556240 PLEKHG5O94827 1062 aa11.71□□□□□ -0.53
GPHN-212ENST00000556240 LHX8Q68G74 356 aa11.69□□□□□ -0.54
GPHN-212ENST00000556240 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
GPHN-212ENST00000556240 PLCD3Q8N3E9 789 aa11.65□□□□□ -0.54
GPHN-212ENST00000556240 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
GPHN-212ENST00000556240 CCDC61Q9Y6R9 512 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms