RNA–Protein interactions for RNA: ENST00000555858.1

MTHFD1-212, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 5

Gene MTHFD1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-212ENST00000555858 CHIC1Q5VXU3 224 aa11.52□□□□□ -0.57
MTHFD1-212ENST00000555858 AEBP2Q6ZN18 517 aaPredicted RBP11.37□□□□□ -0.59
MTHFD1-212ENST00000555858 PHF23Q9BUL5 403 aaPredicted RBP10.15□□□□□ -0.78
MTHFD1-212ENST00000555858 SENP3Q9H4L4 574 aaPredicted RBP9.62□□□□□ -0.87
MTHFD1-212ENST00000555858 PLPPR3Q6T4P5 718 aa9.53□□□□□ -0.88
MTHFD1-212ENST00000555858 ADRA2BP18089 450 aa8.89□□□□□ -0.99
MTHFD1-212ENST00000555858 FOXD1Q16676 465 aa8.85□□□□□ -0.99
MTHFD1-212ENST00000555858 PPP6R1Q9UPN7 881 aa8.82□□□□□ -1
MTHFD1-212ENST00000555858 KCNA4P22459 653 aa8.69□□□□□ -1.02
MTHFD1-212ENST00000555858 EHMT2Q96KQ7 1210 aa8.56□□□□□ -1.04
MTHFD1-212ENST00000555858 PIAS4Q8N2W9 510 aaPredicted RBP8.46□□□□□ -1.06
MTHFD1-212ENST00000555858 PPP4R3CPQ6ZMV5 832 aa8.44□□□□□ -1.06
MTHFD1-212ENST00000555858 SLC4A1APQ9BWU0 796 aaKnown RBP8.36□□□□□ -1.07
MTHFD1-212ENST00000555858 NCBP3Q53F19 620 aaKnown RBP8.35□□□□□ -1.07
MTHFD1-212ENST00000555858 CSRNP3Q8WYN3 585 aa8.28□□□□□ -1.08
MTHFD1-212ENST00000555858 NPM3O75607 178 aaKnown RBP8.21□□□□□ -1.1
MTHFD1-212ENST00000555858 CNKSR2Q8WXI2 1034 aa8.13□□□□□ -1.11
MTHFD1-212ENST00000555858 SCAF1Q9H7N4 1312 aaKnown RBP8.12□□□□□ -1.11
MTHFD1-212ENST00000555858 MSH5O43196 834 aa8.03□□□□□ -1.12
MTHFD1-212ENST00000555858 ZBTB22O15209 634 aa8□□□□□ -1.13
MTHFD1-212ENST00000555858 DNAJC5BQ9UF47 199 aa7.94□□□□□ -1.14
MTHFD1-212ENST00000555858 FOXD4L1Q9NU39 408 aa7.9□□□□□ -1.14
MTHFD1-212ENST00000555858 MAPK8IP2Q13387 824 aaPredicted RBP7.89□□□□□ -1.15
MTHFD1-212ENST00000555858 RNF216Q9NWF9 866 aaPredicted RBP7.87□□□□□ -1.15
MTHFD1-212ENST00000555858 HOXD11P31277 338 aaPredicted RBP7.73□□□□□ -1.17
MTHFD1-212ENST00000555858 DMRT2Q9Y5R5 561 aa7.73□□□□□ -1.17
MTHFD1-212ENST00000555858 SLC4A2P04920 1241 aa7.65□□□□□ -1.18
MTHFD1-212ENST00000555858 MYCNP04198 464 aaPredicted RBP7.6□□□□□ -1.19
MTHFD1-212ENST00000555858 ATXN8OSP0DMR3 200 aa7.6□□□□□ -1.19
MTHFD1-212ENST00000555858 AMER1Q5JTC6 1135 aaPredicted RBP7.53□□□□□ -1.2
MTHFD1-212ENST00000555858 RTN4Q9NQC3 1192 aaKnown RBP7.49□□□□□ -1.21
MTHFD1-212ENST00000555858 FKBP8Q14318 412 aa7.46□□□□□ -1.22
MTHFD1-212ENST00000555858 SLC24A1O60721 1099 aa7.43□□□□□ -1.22
MTHFD1-212ENST00000555858 DCAF8L1A6NGE4 600 aa7.36□□□□□ -1.23
MTHFD1-212ENST00000555858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.36□□□□□ -1.234e-7■■□□□ 13.9
MTHFD1-212ENST00000555858 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.35□□□□□ -1.23
MTHFD1-212ENST00000555858 HNRNPUL2Q1KMD3 747 aaKnown RBP7.35□□□□□ -1.23
MTHFD1-212ENST00000555858 SAMD1Q6SPF0 538 aaPredicted RBP7.34□□□□□ -1.23
MTHFD1-212ENST00000555858 ATF5Q9Y2D1 282 aaPredicted RBP7.33□□□□□ -1.24
MTHFD1-212ENST00000555858 U3KPZ7 1027 aaPredicted RBP7.28□□□□□ -1.24
MTHFD1-212ENST00000555858 APLP2Q06481 763 aa7.19□□□□□ -1.26
MTHFD1-212ENST00000555858 ZNF219Q9P2Y4 722 aaPredicted RBP7.18□□□□□ -1.26
MTHFD1-212ENST00000555858 FBXO3Q9UK99 471 aa7.12□□□□□ -1.27
MTHFD1-212ENST00000555858 SPDYE4A6NLX3 237 aa7.09□□□□□ -1.27
MTHFD1-212ENST00000555858 MKRN4PQ13434 485 aaPredicted RBP7.04□□□□□ -1.28
MTHFD1-212ENST00000555858 PROM2Q8N271 834 aa7.04□□□□□ -1.28
MTHFD1-212ENST00000555858 FBLN2P98095 1184 aa7.03□□□□□ -1.28
MTHFD1-212ENST00000555858 VASPP50552 380 aaPredicted RBP7□□□□□ -1.29
MTHFD1-212ENST00000555858 TRHP20396 242 aaPredicted RBP6.98□□□□□ -1.29
MTHFD1-212ENST00000555858 POLA2Q14181 598 aa6.95□□□□□ -1.3
MTHFD1-212ENST00000555858 SPINK5Q9NQ38 1064 aaPredicted RBP6.95□□□□□ -1.3
MTHFD1-212ENST00000555858 PLCB2Q00722 1185 aa6.93□□□□□ -1.3
MTHFD1-212ENST00000555858 CAPN15O75808 1086 aa6.91□□□□□ -1.3
MTHFD1-212ENST00000555858 IFNLR1Q8IU57 520 aaPredicted RBP6.91□□□□□ -1.3
MTHFD1-212ENST00000555858 RNF39Q9H2S5 420 aa6.91□□□□□ -1.3
MTHFD1-212ENST00000555858 ZBTB12Q9Y330 459 aaPredicted RBP6.9□□□□□ -1.3
MTHFD1-212ENST00000555858 DCAF8L2P0C7V8 631 aa6.86□□□□□ -1.31
MTHFD1-212ENST00000555858 C1QBPQ07021 282 aaKnown RBP6.86□□□□□ -1.31
MTHFD1-212ENST00000555858 PKD2Q13563 968 aa6.84□□□□□ -1.31
MTHFD1-212ENST00000555858 HAP1P54257 671 aaPredicted RBP6.82□□□□□ -1.32
MTHFD1-212ENST00000555858 ABCB7O75027 752 aa6.81□□□□□ -1.32
MTHFD1-212ENST00000555858 KLHL34Q8N239 644 aa6.78□□□□□ -1.32
MTHFD1-212ENST00000555858 SPOCK2Q92563 424 aa6.78□□□□□ -1.32
MTHFD1-212ENST00000555858 STAG3Q9UJ98 1225 aa6.77□□□□□ -1.33
MTHFD1-212ENST00000555858 ZNF692Q9BU19 519 aaPredicted RBP6.76□□□□□ -1.33
MTHFD1-212ENST00000555858 SPDYE2BA6NHP3 402 aa6.74□□□□□ -1.33
MTHFD1-212ENST00000555858 ECM2O94769 699 aaPredicted RBP6.74□□□□□ -1.33
MTHFD1-212ENST00000555858 SPDYE6P0CI01 402 aa6.74□□□□□ -1.33
MTHFD1-212ENST00000555858 SPDYE2Q495Y8 402 aa6.74□□□□□ -1.33
MTHFD1-212ENST00000555858 VSIG10Q8N0Z9 540 aa6.74□□□□□ -1.33
MTHFD1-212ENST00000555858 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.73□□□□□ -1.33
MTHFD1-212ENST00000555858 SSUH2Q9Y2M2 353 aa6.73□□□□□ -1.33
MTHFD1-212ENST00000555858 PLCD3Q8N3E9 789 aa6.72□□□□□ -1.33
MTHFD1-212ENST00000555858 BBXQ8WY36 941 aaPredicted RBP6.72□□□□□ -1.33
MTHFD1-212ENST00000555858 BCANQ96GW7 911 aa6.72□□□□□ -1.33
MTHFD1-212ENST00000555858 DSG3P32926 999 aa6.71□□□□□ -1.34
MTHFD1-212ENST00000555858 POTEDQ86YR6 584 aa6.7□□□□□ -1.34
MTHFD1-212ENST00000555858 OSCARQ8IYS5 282 aa6.7□□□□□ -1.34
MTHFD1-212ENST00000555858 PABPN1Q86U42 306 aaKnown RBP eCLIP6.68□□□□□ -1.34
MTHFD1-212ENST00000555858 MIER1Q8N108 512 aa6.67□□□□□ -1.34
MTHFD1-212ENST00000555858 NPM1P06748 294 aaKnown RBP eCLIP6.66□□□□□ -1.34
MTHFD1-212ENST00000555858 RGL2O15211 777 aa6.65□□□□□ -1.34
MTHFD1-212ENST00000555858 PAXIP1Q6ZW49 1069 aaPredicted RBP6.65□□□□□ -1.34
MTHFD1-212ENST00000555858 PLEKHG5O94827 1062 aa6.63□□□□□ -1.35
MTHFD1-212ENST00000555858 CFAP44Q96MT7 982 aa6.63□□□□□ -1.35
MTHFD1-212ENST00000555858 ZBTB47Q9UFB7 747 aaPredicted RBP6.63□□□□□ -1.35
MTHFD1-212ENST00000555858 KDM2AQ9Y2K7 1162 aa6.62□□□□□ -1.35
MTHFD1-212ENST00000555858 TAOK2Q9UL54 1235 aa6.61□□□□□ -1.35
MTHFD1-212ENST00000555858 SPRYD3Q8NCJ5 442 aa6.6□□□□□ -1.35
MTHFD1-212ENST00000555858 CIZ1Q9ULV3 898 aaPredicted RBP6.6□□□□□ -1.35
MTHFD1-212ENST00000555858 TRIM41Q8WV44 630 aa6.59□□□□□ -1.35
MTHFD1-212ENST00000555858 CHGAP10645 457 aaKnown RBP6.56□□□□□ -1.36
MTHFD1-212ENST00000555858 PRKCSHP14314 528 aaPredicted RBP6.56□□□□□ -1.36
MTHFD1-212ENST00000555858 TSHZ2Q9NRE2 1034 aa6.54□□□□□ -1.36
MTHFD1-212ENST00000555858 GSE1Q14687 1217 aa6.52□□□□□ -1.37
MTHFD1-212ENST00000555858 HS6ST3Q8IZP7 471 aa6.52□□□□□ -1.37
MTHFD1-212ENST00000555858 TPRNQ4KMQ1 711 aa6.5□□□□□ -1.37
MTHFD1-212ENST00000555858 DNAJC5Q9H3Z4 198 aa6.49□□□□□ -1.37
MTHFD1-212ENST00000555858 RNF25Q96BH1 459 aaPredicted RBP6.47□□□□□ -1.37
MTHFD1-212ENST00000555858 NUBP1P53384 320 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms