RNA–Protein interactions for RNA: ENST00000555548.1

PAX3-210, Transcript of paired box 3, humanhuman

TSL 4

Gene PAX3, Length 458 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAX3-210ENST00000555548 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
PAX3-210ENST00000555548 AEBP2Q6ZN18 517 aaPredicted RBP23.43■■□□□ 1.34
PAX3-210ENST00000555548 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
PAX3-210ENST00000555548 PLPPR3Q6T4P5 718 aa19.83■□□□□ 0.77
PAX3-210ENST00000555548 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
PAX3-210ENST00000555548 ADRA2BP18089 450 aa18.54■□□□□ 0.56
PAX3-210ENST00000555548 KCNA4P22459 653 aa18.37■□□□□ 0.53
PAX3-210ENST00000555548 EHMT2Q96KQ7 1210 aa18.31■□□□□ 0.52
PAX3-210ENST00000555548 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
PAX3-210ENST00000555548 FOXD1Q16676 465 aa18.17■□□□□ 0.5
PAX3-210ENST00000555548 CSRNP3Q8WYN3 585 aa17.68■□□□□ 0.42
PAX3-210ENST00000555548 SLC4A1APQ9BWU0 796 aaKnown RBP17.67■□□□□ 0.42
PAX3-210ENST00000555548 PPP4R3CPQ6ZMV5 832 aa17.6■□□□□ 0.41
PAX3-210ENST00000555548 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
PAX3-210ENST00000555548 PIAS4Q8N2W9 510 aaPredicted RBP17.35■□□□□ 0.37
PAX3-210ENST00000555548 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
PAX3-210ENST00000555548 ZBTB22O15209 634 aa16.94■□□□□ 0.3
PAX3-210ENST00000555548 CNKSR2Q8WXI2 1034 aa16.89■□□□□ 0.29
PAX3-210ENST00000555548 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
PAX3-210ENST00000555548 DNAJC5BQ9UF47 199 aa16.63■□□□□ 0.25
PAX3-210ENST00000555548 FOXD4L1Q9NU39 408 aa16.61■□□□□ 0.25
PAX3-210ENST00000555548 SLC24A1O60721 1099 aa16.39■□□□□ 0.21
PAX3-210ENST00000555548 MSH5O43196 834 aa16.34■□□□□ 0.21
PAX3-210ENST00000555548 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
PAX3-210ENST00000555548 MAPK8IP2Q13387 824 aaPredicted RBP16.31■□□□□ 0.2
PAX3-210ENST00000555548 AMER1Q5JTC6 1135 aaPredicted RBP16.3■□□□□ 0.2
PAX3-210ENST00000555548 RTN4Q9NQC3 1192 aaKnown RBP16.3■□□□□ 0.2
PAX3-210ENST00000555548 SLC4A2P04920 1241 aa16.01■□□□□ 0.15
PAX3-210ENST00000555548 HOXD11P31277 338 aaPredicted RBP15.99■□□□□ 0.15
PAX3-210ENST00000555548 ATXN8OSP0DMR3 200 aa15.97■□□□□ 0.15
PAX3-210ENST00000555548 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
PAX3-210ENST00000555548 FKBP8Q14318 412 aa15.88■□□□□ 0.13
PAX3-210ENST00000555548 MYCNP04198 464 aaPredicted RBP15.85■□□□□ 0.13
PAX3-210ENST00000555548 ATF5Q9Y2D1 282 aaPredicted RBP15.36■□□□□ 0.05
PAX3-210ENST00000555548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.24■□□□□ 0.03
PAX3-210ENST00000555548 HNRNPUL2Q1KMD3 747 aaKnown RBP15.24■□□□□ 0.03
PAX3-210ENST00000555548 SAMD1Q6SPF0 538 aaPredicted RBP15.24■□□□□ 0.03
PAX3-210ENST00000555548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.19■□□□□ 0.02
PAX3-210ENST00000555548 U3KPZ7 1027 aaPredicted RBP15.1■□□□□ 0.01
PAX3-210ENST00000555548 DCAF8L1A6NGE4 600 aa15.08■□□□□ 0
PAX3-210ENST00000555548 FBXO3Q9UK99 471 aa15.05■□□□□ -0
PAX3-210ENST00000555548 PLCB2Q00722 1185 aa15□□□□□ -0.01
PAX3-210ENST00000555548 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
PAX3-210ENST00000555548 SPDYE4A6NLX3 237 aa14.91□□□□□ -0.02
PAX3-210ENST00000555548 PROM2Q8N271 834 aa14.87□□□□□ -0.03
PAX3-210ENST00000555548 VASPP50552 380 aaPredicted RBP14.83□□□□□ -0.04
PAX3-210ENST00000555548 APLP2Q06481 763 aa14.83□□□□□ -0.04
PAX3-210ENST00000555548 MKRN4PQ13434 485 aaPredicted RBP14.77□□□□□ -0.05
PAX3-210ENST00000555548 HAP1P54257 671 aaPredicted RBP14.75□□□□□ -0.05
PAX3-210ENST00000555548 IFNLR1Q8IU57 520 aaPredicted RBP14.7□□□□□ -0.06
PAX3-210ENST00000555548 BCANQ96GW7 911 aa14.66□□□□□ -0.06
PAX3-210ENST00000555548 DCAF8L2P0C7V8 631 aa14.65□□□□□ -0.06
PAX3-210ENST00000555548 FBLN2P98095 1184 aa14.63□□□□□ -0.07
PAX3-210ENST00000555548 PKD2Q13563 968 aa14.63□□□□□ -0.07
PAX3-210ENST00000555548 VSIG10Q8N0Z9 540 aa14.61□□□□□ -0.07
PAX3-210ENST00000555548 TAOK2Q9UL54 1235 aa14.5□□□□□ -0.09
PAX3-210ENST00000555548 PRKCSHP14314 528 aaPredicted RBP14.49□□□□□ -0.09
PAX3-210ENST00000555548 POLA2Q14181 598 aa14.42□□□□□ -0.1
PAX3-210ENST00000555548 BBXQ8WY36 941 aaPredicted RBP14.42□□□□□ -0.1
PAX3-210ENST00000555548 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.4□□□□□ -0.1
PAX3-210ENST00000555548 TRHP20396 242 aaPredicted RBP14.39□□□□□ -0.11
PAX3-210ENST00000555548 SPOCK2Q92563 424 aa14.36□□□□□ -0.11
PAX3-210ENST00000555548 SPINK5Q9NQ38 1064 aaPredicted RBP14.35□□□□□ -0.11
PAX3-210ENST00000555548 KDM2AQ9Y2K7 1162 aa14.35□□□□□ -0.11
PAX3-210ENST00000555548 ECM2O94769 699 aaPredicted RBP14.3□□□□□ -0.12
PAX3-210ENST00000555548 NPM1P06748 294 aaKnown RBP eCLIP14.3□□□□□ -0.12
PAX3-210ENST00000555548 KLHL34Q8N239 644 aa14.3□□□□□ -0.12
PAX3-210ENST00000555548 PAXIP1Q6ZW49 1069 aaPredicted RBP14.28□□□□□ -0.12
PAX3-210ENST00000555548 ZBTB12Q9Y330 459 aaPredicted RBP14.28□□□□□ -0.12
PAX3-210ENST00000555548 TPRNQ4KMQ1 711 aa14.24□□□□□ -0.13
PAX3-210ENST00000555548 CAPN15O75808 1086 aa14.22□□□□□ -0.13
PAX3-210ENST00000555548 CFAP44Q96MT7 982 aa14.22□□□□□ -0.13
PAX3-210ENST00000555548 STAG3Q9UJ98 1225 aa14.21□□□□□ -0.13
PAX3-210ENST00000555548 RGL2O15211 777 aa14.16□□□□□ -0.14
PAX3-210ENST00000555548 SPRYD3Q8NCJ5 442 aa14.15□□□□□ -0.14
PAX3-210ENST00000555548 RNF39Q9H2S5 420 aa14.12□□□□□ -0.15
PAX3-210ENST00000555548 TSHZ2Q9NRE2 1034 aa14.11□□□□□ -0.15
PAX3-210ENST00000555548 PLCD3Q8N3E9 789 aa14.1□□□□□ -0.15
PAX3-210ENST00000555548 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
PAX3-210ENST00000555548 ABCB7O75027 752 aa14.04□□□□□ -0.16
PAX3-210ENST00000555548 C1QBPQ07021 282 aaKnown RBP14□□□□□ -0.17
PAX3-210ENST00000555548 MIER1Q8N108 512 aa14□□□□□ -0.17
PAX3-210ENST00000555548 SSUH2Q9Y2M2 353 aa14□□□□□ -0.17
PAX3-210ENST00000555548 SPDYE2BA6NHP3 402 aa13.98□□□□□ -0.17
PAX3-210ENST00000555548 SPDYE6P0CI01 402 aa13.98□□□□□ -0.17
PAX3-210ENST00000555548 CHGAP10645 457 aaKnown RBP13.98□□□□□ -0.17
PAX3-210ENST00000555548 SPDYE2Q495Y8 402 aa13.98□□□□□ -0.17
PAX3-210ENST00000555548 DNAJC5Q9H3Z4 198 aa13.97□□□□□ -0.17
PAX3-210ENST00000555548 CIZ1Q9ULV3 898 aaPredicted RBP13.92□□□□□ -0.18
PAX3-210ENST00000555548 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
PAX3-210ENST00000555548 OSCARQ8IYS5 282 aa13.89□□□□□ -0.19
PAX3-210ENST00000555548 TRIM41Q8WV44 630 aa13.89□□□□□ -0.19
PAX3-210ENST00000555548 ZBTB47Q9UFB7 747 aaPredicted RBP13.89□□□□□ -0.19
PAX3-210ENST00000555548 NBR1Q14596 966 aa13.87□□□□□ -0.19
PAX3-210ENST00000555548 HS6ST3Q8IZP7 471 aa13.86□□□□□ -0.19
PAX3-210ENST00000555548 PLEKHG5O94827 1062 aa13.83□□□□□ -0.2
PAX3-210ENST00000555548 DSG3P32926 999 aa13.78□□□□□ -0.2
PAX3-210ENST00000555548 RNF25Q96BH1 459 aaPredicted RBP13.71□□□□□ -0.21
PAX3-210ENST00000555548 GSE1Q14687 1217 aa13.69□□□□□ -0.22
PAX3-210ENST00000555548 NKX1-1Q15270 411 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms