RNA–Protein interactions for RNA: ENST00000555541.1

SNX6-204, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-204ENST00000555541 AEBP2Q6ZN18 517 aaPredicted RBP31.62■■■□□ 2.65
SNX6-204ENST00000555541 CHIC1Q5VXU3 224 aa29.62■■■□□ 2.33
SNX6-204ENST00000555541 SENP3Q9H4L4 574 aaPredicted RBP26.88■■□□□ 1.89
SNX6-204ENST00000555541 PHF23Q9BUL5 403 aaPredicted RBP26.53■■□□□ 1.84
SNX6-204ENST00000555541 FOXD1Q16676 465 aa25.18■■□□□ 1.62
SNX6-204ENST00000555541 POTEDQ86YR6 584 aa23.7■■□□□ 1.38
SNX6-204ENST00000555541 MSH5O43196 834 aa23.59■■□□□ 1.37
SNX6-204ENST00000555541 PLPPR3Q6T4P5 718 aa23.43■■□□□ 1.34
SNX6-204ENST00000555541 PIAS4Q8N2W9 510 aaPredicted RBP23.33■■□□□ 1.33
SNX6-204ENST00000555541 PPP6R1Q9UPN7 881 aa23.33■■□□□ 1.33
SNX6-204ENST00000555541 ADRA2BP18089 450 aa23.16■■□□□ 1.3
SNX6-204ENST00000555541 MAPK8IP2Q13387 824 aaPredicted RBP21.4■■□□□ 1.02
SNX6-204ENST00000555541 DMRT2Q9Y5R5 561 aa21.33■■□□□ 1.01
SNX6-204ENST00000555541 SCAF1Q9H7N4 1312 aaKnown RBP21.04■□□□□ 0.96
SNX6-204ENST00000555541 PPP4R3CPQ6ZMV5 832 aa20.51■□□□□ 0.87
SNX6-204ENST00000555541 HOXD11P31277 338 aaPredicted RBP20.43■□□□□ 0.86
SNX6-204ENST00000555541 CACNB1Q02641 598 aaPredicted RBP20.4■□□□□ 0.86
SNX6-204ENST00000555541 DCAF8L1A6NGE4 600 aa20.24■□□□□ 0.83
SNX6-204ENST00000555541 CNKSR2Q8WXI2 1034 aa20.2■□□□□ 0.82
SNX6-204ENST00000555541 RNF39Q9H2S5 420 aa20.19■□□□□ 0.82
SNX6-204ENST00000555541 RNF216Q9NWF9 866 aaPredicted RBP20.13■□□□□ 0.81
SNX6-204ENST00000555541 C1QBPQ07021 282 aaKnown RBP19.82■□□□□ 0.76
SNX6-204ENST00000555541 DNAJC5BQ9UF47 199 aa19.82■□□□□ 0.76
SNX6-204ENST00000555541 NCBP3Q53F19 620 aaKnown RBP19.51■□□□□ 0.71
SNX6-204ENST00000555541 NPM3O75607 178 aaKnown RBP19.38■□□□□ 0.69
SNX6-204ENST00000555541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.29■□□□□ 0.68
SNX6-204ENST00000555541 U3KPZ7 1027 aaPredicted RBP19.01■□□□□ 0.63
SNX6-204ENST00000555541 SPINK5Q9NQ38 1064 aaPredicted RBP18.81■□□□□ 0.6
SNX6-204ENST00000555541 DSG3P32926 999 aa18.78■□□□□ 0.6
SNX6-204ENST00000555541 KCNA4P22459 653 aa18.7■□□□□ 0.58
SNX6-204ENST00000555541 SLC4A2P04920 1241 aa18.66■□□□□ 0.58
SNX6-204ENST00000555541 CAPN15O75808 1086 aa18.65■□□□□ 0.58
SNX6-204ENST00000555541 POTEHQ6S545 545 aa18.46■□□□□ 0.55
SNX6-204ENST00000555541 TRHP20396 242 aaPredicted RBP18.29■□□□□ 0.52
SNX6-204ENST00000555541 ZNF219Q9P2Y4 722 aaPredicted RBP18.26■□□□□ 0.51
SNX6-204ENST00000555541 ABCB7O75027 752 aa18.24■□□□□ 0.51
SNX6-204ENST00000555541 APLP2Q06481 763 aa18.23■□□□□ 0.51
SNX6-204ENST00000555541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
SNX6-204ENST00000555541 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
SNX6-204ENST00000555541 SAMD1Q6SPF0 538 aaPredicted RBP18.1■□□□□ 0.49
SNX6-204ENST00000555541 MYCNP04198 464 aaPredicted RBP17.86■□□□□ 0.45
SNX6-204ENST00000555541 RBM42Q9BTD8 480 aaKnown RBP17.8■□□□□ 0.44
SNX6-204ENST00000555541 POLA2Q14181 598 aa17.78■□□□□ 0.44
SNX6-204ENST00000555541 CHRDL2Q6WN34 429 aa17.61■□□□□ 0.41
SNX6-204ENST00000555541 ATF5Q9Y2D1 282 aaPredicted RBP17.59■□□□□ 0.41
SNX6-204ENST00000555541 FOXD4L1Q9NU39 408 aa17.5■□□□□ 0.39
SNX6-204ENST00000555541 SLC4A1APQ9BWU0 796 aaKnown RBP17.49■□□□□ 0.39
SNX6-204ENST00000555541 AKT1S1Q96B36 256 aa17.39■□□□□ 0.37
SNX6-204ENST00000555541 ZBTB12Q9Y330 459 aaPredicted RBP17.32■□□□□ 0.36
SNX6-204ENST00000555541 ZBTB22O15209 634 aa17.26■□□□□ 0.35
SNX6-204ENST00000555541 REM2Q8IYK8 340 aaPredicted RBP17.25■□□□□ 0.35
SNX6-204ENST00000555541 OSCARQ8IYS5 282 aa17.24■□□□□ 0.35
SNX6-204ENST00000555541 PIP4P2Q8N4L2 257 aa17.16■□□□□ 0.34
SNX6-204ENST00000555541 SP7Q8TDD2 431 aaPredicted RBP17.14■□□□□ 0.33
SNX6-204ENST00000555541 PITPNM1O00562 1244 aa17.07■□□□□ 0.32
SNX6-204ENST00000555541 FXR2P51116 673 aaKnown RBP eCLIP17.04■□□□□ 0.32
SNX6-204ENST00000555541 ATXN8OSP0DMR3 200 aa17.02■□□□□ 0.32
SNX6-204ENST00000555541 HAX1O00165 279 aa16.83■□□□□ 0.28
SNX6-204ENST00000555541 SPDYE2BA6NHP3 402 aa16.82■□□□□ 0.28
SNX6-204ENST00000555541 SPDYE6P0CI01 402 aa16.82■□□□□ 0.28
SNX6-204ENST00000555541 SPDYE2Q495Y8 402 aa16.82■□□□□ 0.28
SNX6-204ENST00000555541 EVX2Q03828 476 aa16.78■□□□□ 0.28
SNX6-204ENST00000555541 MKRN4PQ13434 485 aaPredicted RBP16.78■□□□□ 0.28
SNX6-204ENST00000555541 FBLN2P98095 1184 aa16.72■□□□□ 0.27
SNX6-204ENST00000555541 SSUH2Q9Y2M2 353 aa16.65■□□□□ 0.26
SNX6-204ENST00000555541 SPDYE1Q8NFV5 336 aaPredicted RBP16.58■□□□□ 0.24
SNX6-204ENST00000555541 PRKAR2AP13861 404 aaKnown RBP16.57■□□□□ 0.24
SNX6-204ENST00000555541 ZNF692Q9BU19 519 aaPredicted RBP16.52■□□□□ 0.24
SNX6-204ENST00000555541 C19orf67A6NJJ6 358 aa16.5■□□□□ 0.23
SNX6-204ENST00000555541 CLEC11AQ9Y240 323 aa16.5■□□□□ 0.23
SNX6-204ENST00000555541 CHADLQ6NUI6 762 aa16.32■□□□□ 0.2
SNX6-204ENST00000555541 GABBR2O75899 941 aa16.3■□□□□ 0.2
SNX6-204ENST00000555541 PABPN1Q86U42 306 aaKnown RBP eCLIP16.3■□□□□ 0.2
SNX6-204ENST00000555541 PRR29P0C7W0 189 aa16.22■□□□□ 0.19
SNX6-204ENST00000555541 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
SNX6-204ENST00000555541 FARP1Q9Y4F1 1045 aaPredicted RBP16.07■□□□□ 0.16
SNX6-204ENST00000555541 POTEIP0CG38 1075 aa16.05■□□□□ 0.16
SNX6-204ENST00000555541 LHX8Q68G74 356 aa16.05■□□□□ 0.16
SNX6-204ENST00000555541 CD44P16070 742 aaKnown RBP16.01■□□□□ 0.15
SNX6-204ENST00000555541 CLCN6P51797 869 aa15.87■□□□□ 0.13
SNX6-204ENST00000555541 CREBZFQ9NS37 354 aa15.87■□□□□ 0.13
SNX6-204ENST00000555541 ZNF579Q8NAF0 562 aaKnown RBP15.82■□□□□ 0.12
SNX6-204ENST00000555541 STAG3Q9UJ98 1225 aa15.72■□□□□ 0.11
SNX6-204ENST00000555541 ZRANB1Q9UGI0 708 aa15.71■□□□□ 0.11
SNX6-204ENST00000555541 SPDYE4A6NLX3 237 aa15.67■□□□□ 0.1
SNX6-204ENST00000555541 DCBLD2Q96PD2 775 aa15.66■□□□□ 0.1
SNX6-204ENST00000555541 GALR2O43603 387 aaPredicted RBP15.65■□□□□ 0.1
SNX6-204ENST00000555541 MNX1P50219 401 aaPredicted RBP15.62■□□□□ 0.09
SNX6-204ENST00000555541 EHMT2Q96KQ7 1210 aa15.55■□□□□ 0.08
SNX6-204ENST00000555541 PHF12Q96QT6 1004 aa15.52■□□□□ 0.08
SNX6-204ENST00000555541 POTEB2H3BUK9 544 aa15.51■□□□□ 0.07
SNX6-204ENST00000555541 OTUD5Q96G74 571 aa15.47■□□□□ 0.07
SNX6-204ENST00000555541 PELP1Q8IZL8 1130 aaKnown RBP15.44■□□□□ 0.06
SNX6-204ENST00000555541 PROM2Q8N271 834 aa15.42■□□□□ 0.06
SNX6-204ENST00000555541 PAK3O75914 559 aaPredicted RBP15.41■□□□□ 0.06
SNX6-204ENST00000555541 NPM1P06748 294 aaKnown RBP eCLIP15.4■□□□□ 0.06
SNX6-204ENST00000555541 ASTLQ6HA08 431 aaPredicted RBP15.32■□□□□ 0.04
SNX6-204ENST00000555541 MS4A3Q96HJ5 214 aa15.31■□□□□ 0.04
SNX6-204ENST00000555541 ATMINO43313 823 aaPredicted RBP15.27■□□□□ 0.04
SNX6-204ENST00000555541 POTEJP0CG39 1038 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms