RNA–Protein interactions for RNA: ENST00000553673.1

FCF1-204, Transcript of FCF1, rRNA-processing protein, humanhuman

TSL 4

Gene FCF1, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FCF1-204ENST00000553673 AEBP2Q6ZN18 517 aaPredicted RBP28.35■■■□□ 2.13
FCF1-204ENST00000553673 CHIC1Q5VXU3 224 aa26.82■■□□□ 1.88
FCF1-204ENST00000553673 SENP3Q9H4L4 574 aaPredicted RBP24.19■■□□□ 1.46
FCF1-204ENST00000553673 PHF23Q9BUL5 403 aaPredicted RBP23.86■■□□□ 1.41
FCF1-204ENST00000553673 FOXD1Q16676 465 aa22.56■■□□□ 1.2
FCF1-204ENST00000553673 PLPPR3Q6T4P5 718 aa21.39■■□□□ 1.01
FCF1-204ENST00000553673 MSH5O43196 834 aa21.13■□□□□ 0.97
FCF1-204ENST00000553673 PIAS4Q8N2W9 510 aaPredicted RBP21.09■□□□□ 0.97
FCF1-204ENST00000553673 PPP6R1Q9UPN7 881 aa21.04■□□□□ 0.96
FCF1-204ENST00000553673 ADRA2BP18089 450 aa20.98■□□□□ 0.95
FCF1-204ENST00000553673 POTEDQ86YR6 584 aa20.8■□□□□ 0.92
FCF1-204ENST00000553673 MAPK8IP2Q13387 824 aaPredicted RBP19.29■□□□□ 0.68
FCF1-204ENST00000553673 DMRT2Q9Y5R5 561 aa19.17■□□□□ 0.66
FCF1-204ENST00000553673 SCAF1Q9H7N4 1312 aaKnown RBP19.16■□□□□ 0.66
FCF1-204ENST00000553673 PPP4R3CPQ6ZMV5 832 aa18.75■□□□□ 0.59
FCF1-204ENST00000553673 DCAF8L1A6NGE4 600 aa18.43■□□□□ 0.54
FCF1-204ENST00000553673 HOXD11P31277 338 aaPredicted RBP18.42■□□□□ 0.54
FCF1-204ENST00000553673 CNKSR2Q8WXI2 1034 aa18.41■□□□□ 0.54
FCF1-204ENST00000553673 RNF216Q9NWF9 866 aaPredicted RBP18.26■□□□□ 0.51
FCF1-204ENST00000553673 CACNB1Q02641 598 aaPredicted RBP18.22■□□□□ 0.51
FCF1-204ENST00000553673 RNF39Q9H2S5 420 aa18.03■□□□□ 0.48
FCF1-204ENST00000553673 NCBP3Q53F19 620 aaKnown RBP17.99■□□□□ 0.47
FCF1-204ENST00000553673 DNAJC5BQ9UF47 199 aa17.76■□□□□ 0.43
FCF1-204ENST00000553673 C1QBPQ07021 282 aaKnown RBP17.75■□□□□ 0.43
FCF1-204ENST00000553673 NPM3O75607 178 aaKnown RBP17.74■□□□□ 0.43
FCF1-204ENST00000553673 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.57■□□□□ 0.4
FCF1-204ENST00000553673 KCNA4P22459 653 aa17.34■□□□□ 0.37
FCF1-204ENST00000553673 U3KPZ7 1027 aaPredicted RBP17.19■□□□□ 0.34
FCF1-204ENST00000553673 SPINK5Q9NQ38 1064 aaPredicted RBP16.98■□□□□ 0.31
FCF1-204ENST00000553673 CAPN15O75808 1086 aa16.96■□□□□ 0.31
FCF1-204ENST00000553673 SLC4A2P04920 1241 aa16.96■□□□□ 0.31
FCF1-204ENST00000553673 DSG3P32926 999 aa16.86■□□□□ 0.29
FCF1-204ENST00000553673 APLP2Q06481 763 aa16.68■□□□□ 0.26
FCF1-204ENST00000553673 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
FCF1-204ENST00000553673 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.65■□□□□ 0.26
FCF1-204ENST00000553673 HNRNPUL2Q1KMD3 747 aaKnown RBP16.65■□□□□ 0.26
FCF1-204ENST00000553673 ZNF219Q9P2Y4 722 aaPredicted RBP16.61■□□□□ 0.25
FCF1-204ENST00000553673 ABCB7O75027 752 aa16.57■□□□□ 0.24
FCF1-204ENST00000553673 SAMD1Q6SPF0 538 aaPredicted RBP16.55■□□□□ 0.24
FCF1-204ENST00000553673 MYCNP04198 464 aaPredicted RBP16.41■□□□□ 0.22
FCF1-204ENST00000553673 SLC4A1APQ9BWU0 796 aaKnown RBP16.35■□□□□ 0.21
FCF1-204ENST00000553673 POTEHQ6S545 545 aa16.29■□□□□ 0.2
FCF1-204ENST00000553673 POLA2Q14181 598 aa16.19■□□□□ 0.18
FCF1-204ENST00000553673 FOXD4L1Q9NU39 408 aa16.19■□□□□ 0.18
FCF1-204ENST00000553673 RBM42Q9BTD8 480 aaKnown RBP16.08■□□□□ 0.16
FCF1-204ENST00000553673 ATF5Q9Y2D1 282 aaPredicted RBP16.05■□□□□ 0.16
FCF1-204ENST00000553673 ZBTB22O15209 634 aa15.93■□□□□ 0.14
FCF1-204ENST00000553673 ZBTB12Q9Y330 459 aaPredicted RBP15.83■□□□□ 0.12
FCF1-204ENST00000553673 CHRDL2Q6WN34 429 aa15.79■□□□□ 0.12
FCF1-204ENST00000553673 OSCARQ8IYS5 282 aa15.7■□□□□ 0.1
FCF1-204ENST00000553673 AKT1S1Q96B36 256 aa15.69■□□□□ 0.1
FCF1-204ENST00000553673 ATXN8OSP0DMR3 200 aa15.67■□□□□ 0.1
FCF1-204ENST00000553673 REM2Q8IYK8 340 aaPredicted RBP15.56■□□□□ 0.08
FCF1-204ENST00000553673 FBLN2P98095 1184 aa15.42■□□□□ 0.06
FCF1-204ENST00000553673 PITPNM1O00562 1244 aa15.41■□□□□ 0.06
FCF1-204ENST00000553673 PIP4P2Q8N4L2 257 aa15.4■□□□□ 0.06
FCF1-204ENST00000553673 SPDYE2BA6NHP3 402 aa15.34■□□□□ 0.05
FCF1-204ENST00000553673 SPDYE6P0CI01 402 aa15.34■□□□□ 0.05
FCF1-204ENST00000553673 SPDYE2Q495Y8 402 aa15.34■□□□□ 0.05
FCF1-204ENST00000553673 MKRN4PQ13434 485 aaPredicted RBP15.3■□□□□ 0.04
FCF1-204ENST00000553673 FXR2P51116 673 aaKnown RBP eCLIP15.26■□□□□ 0.03
FCF1-204ENST00000553673 SP7Q8TDD2 431 aaPredicted RBP15.22■□□□□ 0.03
FCF1-204ENST00000553673 ZNF692Q9BU19 519 aaPredicted RBP15.16■□□□□ 0.02
FCF1-204ENST00000553673 HAX1O00165 279 aa15.14■□□□□ 0.01
FCF1-204ENST00000553673 SSUH2Q9Y2M2 353 aa15.12■□□□□ 0.01
FCF1-204ENST00000553673 CSRNP3Q8WYN3 585 aa15.11■□□□□ 0.01
FCF1-204ENST00000553673 CLEC11AQ9Y240 323 aa15.11■□□□□ 0.01
FCF1-204ENST00000553673 SPDYE1Q8NFV5 336 aaPredicted RBP15.1■□□□□ 0.01
FCF1-204ENST00000553673 PRKAR2AP13861 404 aaKnown RBP15.01□□□□□ -0.01
FCF1-204ENST00000553673 EVX2Q03828 476 aa14.95□□□□□ -0.02
FCF1-204ENST00000553673 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
FCF1-204ENST00000553673 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
FCF1-204ENST00000553673 PRR29P0C7W0 189 aa14.83□□□□□ -0.04
FCF1-204ENST00000553673 CHADLQ6NUI6 762 aa14.83□□□□□ -0.04
FCF1-204ENST00000553673 C19orf67A6NJJ6 358 aa14.78□□□□□ -0.04
FCF1-204ENST00000553673 GABBR2O75899 941 aa14.6□□□□□ -0.07
FCF1-204ENST00000553673 FARP1Q9Y4F1 1045 aaPredicted RBP14.58□□□□□ -0.08
FCF1-204ENST00000553673 SPDYE4A6NLX3 237 aa14.54□□□□□ -0.08
FCF1-204ENST00000553673 CD44P16070 742 aaKnown RBP14.53□□□□□ -0.08
FCF1-204ENST00000553673 STAG3Q9UJ98 1225 aa14.48□□□□□ -0.09
FCF1-204ENST00000553673 CREBZFQ9NS37 354 aa14.43□□□□□ -0.1
FCF1-204ENST00000553673 ZRANB1Q9UGI0 708 aa14.31□□□□□ -0.12
FCF1-204ENST00000553673 POTEIP0CG38 1075 aa14.29□□□□□ -0.12
FCF1-204ENST00000553673 CLCN6P51797 869 aa14.29□□□□□ -0.12
FCF1-204ENST00000553673 LHX8Q68G74 356 aa14.28□□□□□ -0.12
FCF1-204ENST00000553673 ZNF579Q8NAF0 562 aaKnown RBP14.28□□□□□ -0.12
FCF1-204ENST00000553673 DCBLD2Q96PD2 775 aa14.2□□□□□ -0.14
FCF1-204ENST00000553673 MNX1P50219 401 aaPredicted RBP14.17□□□□□ -0.14
FCF1-204ENST00000553673 PAK3O75914 559 aaPredicted RBP14.16□□□□□ -0.14
FCF1-204ENST00000553673 NPM1P06748 294 aaKnown RBP eCLIP14.16□□□□□ -0.14
FCF1-204ENST00000553673 GALR2O43603 387 aaPredicted RBP14.14□□□□□ -0.15
FCF1-204ENST00000553673 PROM2Q8N271 834 aa14.14□□□□□ -0.15
FCF1-204ENST00000553673 PHF12Q96QT6 1004 aa14.12□□□□□ -0.15
FCF1-204ENST00000553673 TSPYL2Q9H2G4 693 aaPredicted RBP13.94□□□□□ -0.18
FCF1-204ENST00000553673 MS4A3Q96HJ5 214 aa13.92□□□□□ -0.18
FCF1-204ENST00000553673 MIER1Q8N108 512 aa13.88□□□□□ -0.19
FCF1-204ENST00000553673 PLEKHG5O94827 1062 aa13.87□□□□□ -0.19
FCF1-204ENST00000553673 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
FCF1-204ENST00000553673 CCDC61Q9Y6R9 512 aa13.85□□□□□ -0.19
FCF1-204ENST00000553673 POTEB2H3BUK9 544 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms