RNA–Protein interactions for RNA: ENST00000552433.1

LETMD1-233, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 727 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-233ENST00000552433 AEBP2Q6ZN18 517 aaPredicted RBP32.54■■■□□ 2.8
LETMD1-233ENST00000552433 CHIC1Q5VXU3 224 aa31.2■■■□□ 2.59
LETMD1-233ENST00000552433 SENP3Q9H4L4 574 aaPredicted RBP27.59■■■□□ 2.01
LETMD1-233ENST00000552433 PHF23Q9BUL5 403 aaPredicted RBP27.45■■□□□ 1.98
LETMD1-233ENST00000552433 FOXD1Q16676 465 aa25.75■■□□□ 1.71
LETMD1-233ENST00000552433 PLPPR3Q6T4P5 718 aa25.08■■□□□ 1.61
LETMD1-233ENST00000552433 PPP6R1Q9UPN7 881 aa24.43■■□□□ 1.5
LETMD1-233ENST00000552433 ADRA2BP18089 450 aa24.38■■□□□ 1.49
LETMD1-233ENST00000552433 PIAS4Q8N2W9 510 aaPredicted RBP24.14■■□□□ 1.45
LETMD1-233ENST00000552433 MSH5O43196 834 aa23.86■■□□□ 1.41
LETMD1-233ENST00000552433 POTEDQ86YR6 584 aa22.73■■□□□ 1.23
LETMD1-233ENST00000552433 MAPK8IP2Q13387 824 aaPredicted RBP22.31■■□□□ 1.16
LETMD1-233ENST00000552433 SCAF1Q9H7N4 1312 aaKnown RBP22.18■■□□□ 1.14
LETMD1-233ENST00000552433 PPP4R3CPQ6ZMV5 832 aa22.1■■□□□ 1.13
LETMD1-233ENST00000552433 DMRT2Q9Y5R5 561 aa21.95■■□□□ 1.1
LETMD1-233ENST00000552433 CNKSR2Q8WXI2 1034 aa21.54■■□□□ 1.04
LETMD1-233ENST00000552433 NCBP3Q53F19 620 aaKnown RBP21.3■■□□□ 1
LETMD1-233ENST00000552433 HOXD11P31277 338 aaPredicted RBP21.28■■□□□ 1
LETMD1-233ENST00000552433 RNF216Q9NWF9 866 aaPredicted RBP21.23■□□□□ 0.99
LETMD1-233ENST00000552433 DCAF8L1A6NGE4 600 aa21.16■□□□□ 0.98
LETMD1-233ENST00000552433 NPM3O75607 178 aaKnown RBP21.04■□□□□ 0.96
LETMD1-233ENST00000552433 KCNA4P22459 653 aa21.02■□□□□ 0.96
LETMD1-233ENST00000552433 RNF39Q9H2S5 420 aa20.43■□□□□ 0.86
LETMD1-233ENST00000552433 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.36■□□□□ 0.853e-14■□□□□ 10.9
LETMD1-233ENST00000552433 DNAJC5BQ9UF47 199 aa20.36■□□□□ 0.85
LETMD1-233ENST00000552433 CACNB1Q02641 598 aaPredicted RBP20.34■□□□□ 0.85
LETMD1-233ENST00000552433 C1QBPQ07021 282 aaKnown RBP20.12■□□□□ 0.81
LETMD1-233ENST00000552433 SLC4A2P04920 1241 aa20.01■□□□□ 0.79
LETMD1-233ENST00000552433 U3KPZ7 1027 aaPredicted RBP19.94■□□□□ 0.78
LETMD1-233ENST00000552433 SLC4A1APQ9BWU0 796 aaKnown RBP19.89■□□□□ 0.77
LETMD1-233ENST00000552433 SPINK5Q9NQ38 1064 aaPredicted RBP19.6■□□□□ 0.73
LETMD1-233ENST00000552433 CAPN15O75808 1086 aa19.53■□□□□ 0.72
LETMD1-233ENST00000552433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.42■□□□□ 0.7
LETMD1-233ENST00000552433 HNRNPUL2Q1KMD3 747 aaKnown RBP19.42■□□□□ 0.7
LETMD1-233ENST00000552433 FOXD4L1Q9NU39 408 aa19.42■□□□□ 0.7
LETMD1-233ENST00000552433 MYCNP04198 464 aaPredicted RBP19.4■□□□□ 0.7
LETMD1-233ENST00000552433 SAMD1Q6SPF0 538 aaPredicted RBP19.35■□□□□ 0.69
LETMD1-233ENST00000552433 ZBTB22O15209 634 aa19.34■□□□□ 0.69
LETMD1-233ENST00000552433 TRHP20396 242 aaPredicted RBP19.34■□□□□ 0.69
LETMD1-233ENST00000552433 APLP2Q06481 763 aa19.32■□□□□ 0.68
LETMD1-233ENST00000552433 DSG3P32926 999 aa19.29■□□□□ 0.68
LETMD1-233ENST00000552433 ZNF219Q9P2Y4 722 aaPredicted RBP19.19■□□□□ 0.66
LETMD1-233ENST00000552433 ABCB7O75027 752 aa19.16■□□□□ 0.66
LETMD1-233ENST00000552433 ATF5Q9Y2D1 282 aaPredicted RBP19.05■□□□□ 0.64
LETMD1-233ENST00000552433 POLA2Q14181 598 aa18.89■□□□□ 0.61
LETMD1-233ENST00000552433 EHMT2Q96KQ7 1210 aa18.8■□□□□ 0.6
LETMD1-233ENST00000552433 CSRNP3Q8WYN3 585 aa18.79■□□□□ 0.6
LETMD1-233ENST00000552433 ATXN8OSP0DMR3 200 aa18.73■□□□□ 0.59
LETMD1-233ENST00000552433 ZBTB12Q9Y330 459 aaPredicted RBP18.39■□□□□ 0.53
LETMD1-233ENST00000552433 RBM42Q9BTD8 480 aaKnown RBP18.31■□□□□ 0.52
LETMD1-233ENST00000552433 OSCARQ8IYS5 282 aa18.24■□□□□ 0.51
LETMD1-233ENST00000552433 FBLN2P98095 1184 aa18.18■□□□□ 0.5
LETMD1-233ENST00000552433 MKRN4PQ13434 485 aaPredicted RBP18.14■□□□□ 0.49
LETMD1-233ENST00000552433 AKT1S1Q96B36 256 aa18.01■□□□□ 0.47
LETMD1-233ENST00000552433 SPDYE2BA6NHP3 402 aa17.9■□□□□ 0.46
LETMD1-233ENST00000552433 SPDYE6P0CI01 402 aa17.9■□□□□ 0.46
LETMD1-233ENST00000552433 SPDYE2Q495Y8 402 aa17.9■□□□□ 0.46
LETMD1-233ENST00000552433 REM2Q8IYK8 340 aaPredicted RBP17.9■□□□□ 0.46
LETMD1-233ENST00000552433 POTEHQ6S545 545 aa17.88■□□□□ 0.45
LETMD1-233ENST00000552433 CHRDL2Q6WN34 429 aa17.83■□□□□ 0.44
LETMD1-233ENST00000552433 ZNF692Q9BU19 519 aaPredicted RBP17.83■□□□□ 0.44
LETMD1-233ENST00000552433 SSUH2Q9Y2M2 353 aa17.71■□□□□ 0.43
LETMD1-233ENST00000552433 PITPNM1O00562 1244 aa17.7■□□□□ 0.42
LETMD1-233ENST00000552433 PABPN1Q86U42 306 aaKnown RBP eCLIP17.58■□□□□ 0.4
LETMD1-233ENST00000552433 CLEC11AQ9Y240 323 aa17.57■□□□□ 0.4
LETMD1-233ENST00000552433 PIP4P2Q8N4L2 257 aa17.52■□□□□ 0.4
LETMD1-233ENST00000552433 SPDYE1Q8NFV5 336 aaPredicted RBP17.51■□□□□ 0.39
LETMD1-233ENST00000552433 SPDYE4A6NLX3 237 aa17.47■□□□□ 0.39
LETMD1-233ENST00000552433 FXR2P51116 673 aaKnown RBP eCLIP17.44■□□□□ 0.38
LETMD1-233ENST00000552433 PRR29P0C7W0 189 aa17.29■□□□□ 0.36
LETMD1-233ENST00000552433 PRKAR2AP13861 404 aaKnown RBP17.26■□□□□ 0.35
LETMD1-233ENST00000552433 CHADLQ6NUI6 762 aa17.21■□□□□ 0.35
LETMD1-233ENST00000552433 HAX1O00165 279 aa17.13■□□□□ 0.33
LETMD1-233ENST00000552433 STAG3Q9UJ98 1225 aa17.09■□□□□ 0.33
LETMD1-233ENST00000552433 FKBP8Q14318 412 aa17.03■□□□□ 0.32
LETMD1-233ENST00000552433 PROM2Q8N271 834 aa17.02■□□□□ 0.32
LETMD1-233ENST00000552433 EVX2Q03828 476 aa16.98■□□□□ 0.31
LETMD1-233ENST00000552433 CREBZFQ9NS37 354 aa16.94■□□□□ 0.3
LETMD1-233ENST00000552433 SP7Q8TDD2 431 aaPredicted RBP16.92■□□□□ 0.3
LETMD1-233ENST00000552433 FARP1Q9Y4F1 1045 aaPredicted RBP16.91■□□□□ 0.3
LETMD1-233ENST00000552433 C19orf67A6NJJ6 358 aa16.86■□□□□ 0.29
LETMD1-233ENST00000552433 CD44P16070 742 aaKnown RBP16.72■□□□□ 0.27
LETMD1-233ENST00000552433 MNX1P50219 401 aaPredicted RBP16.68■□□□□ 0.26
LETMD1-233ENST00000552433 MIER1Q8N108 512 aa16.67■□□□□ 0.26
LETMD1-233ENST00000552433 NPM1P06748 294 aaKnown RBP eCLIP16.6■□□□□ 0.25
LETMD1-233ENST00000552433 ZRANB1Q9UGI0 708 aa16.58■□□□□ 0.24
LETMD1-233ENST00000552433 GABBR2O75899 941 aa16.57■□□□□ 0.24
LETMD1-233ENST00000552433 PLCD3Q8N3E9 789 aa16.56■□□□□ 0.24
LETMD1-233ENST00000552433 PLEKHG5O94827 1062 aa16.53■□□□□ 0.24
LETMD1-233ENST00000552433 FBXO3Q9UK99 471 aa16.47■□□□□ 0.23
LETMD1-233ENST00000552433 PAK3O75914 559 aaPredicted RBP16.45■□□□□ 0.22
LETMD1-233ENST00000552433 ZNF579Q8NAF0 562 aaKnown RBP16.42■□□□□ 0.22
LETMD1-233ENST00000552433 TSPYL2Q9H2G4 693 aaPredicted RBP16.41■□□□□ 0.22
LETMD1-233ENST00000552433 PHF12Q96QT6 1004 aa16.39■□□□□ 0.21
LETMD1-233ENST00000552433 RASEFQ8IZ41 740 aa16.33■□□□□ 0.2
LETMD1-233ENST00000552433 VASPP50552 380 aaPredicted RBP16.3■□□□□ 0.2
LETMD1-233ENST00000552433 ZBTB47Q9UFB7 747 aaPredicted RBP16.3■□□□□ 0.2
LETMD1-233ENST00000552433 GALR2O43603 387 aaPredicted RBP16.28■□□□□ 0.2
LETMD1-233ENST00000552433 CLCN6P51797 869 aa16.28■□□□□ 0.2
LETMD1-233ENST00000552433 NUBP1P53384 320 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms