RNA–Protein interactions for RNA: ENST00000552408.1

PRIM1-207, Transcript of DNA primase subunit 1, humanhuman

TSL 3

Gene PRIM1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-207ENST00000552408 AEBP2Q6ZN18 517 aaPredicted RBP27.6■■■□□ 2.01
PRIM1-207ENST00000552408 CHIC1Q5VXU3 224 aa26.29■■□□□ 1.8
PRIM1-207ENST00000552408 SENP3Q9H4L4 574 aaPredicted RBP23.32■■□□□ 1.32
PRIM1-207ENST00000552408 PHF23Q9BUL5 403 aaPredicted RBP23.17■■□□□ 1.3
PRIM1-207ENST00000552408 FOXD1Q16676 465 aa21.84■■□□□ 1.09
PRIM1-207ENST00000552408 PLPPR3Q6T4P5 718 aa21.03■□□□□ 0.96
PRIM1-207ENST00000552408 PPP6R1Q9UPN7 881 aa20.65■□□□□ 0.9
PRIM1-207ENST00000552408 ADRA2BP18089 450 aa20.6■□□□□ 0.89
PRIM1-207ENST00000552408 PIAS4Q8N2W9 510 aaPredicted RBP20.42■□□□□ 0.86
PRIM1-207ENST00000552408 MSH5O43196 834 aa20.19■□□□□ 0.82
PRIM1-207ENST00000552408 POTEDQ86YR6 584 aa19.51■□□□□ 0.71
PRIM1-207ENST00000552408 MAPK8IP2Q13387 824 aaPredicted RBP18.88■□□□□ 0.61
PRIM1-207ENST00000552408 SCAF1Q9H7N4 1312 aaKnown RBP18.59■□□□□ 0.57
PRIM1-207ENST00000552408 DMRT2Q9Y5R5 561 aa18.57■□□□□ 0.56
PRIM1-207ENST00000552408 PPP4R3CPQ6ZMV5 832 aa18.55■□□□□ 0.56
PRIM1-207ENST00000552408 CNKSR2Q8WXI2 1034 aa18.08■□□□□ 0.48
PRIM1-207ENST00000552408 HOXD11P31277 338 aaPredicted RBP17.95■□□□□ 0.46
PRIM1-207ENST00000552408 DCAF8L1A6NGE4 600 aa17.87■□□□□ 0.45
PRIM1-207ENST00000552408 RNF216Q9NWF9 866 aaPredicted RBP17.85■□□□□ 0.45
PRIM1-207ENST00000552408 NCBP3Q53F19 620 aaKnown RBP17.77■□□□□ 0.44
PRIM1-207ENST00000552408 NPM3O75607 178 aaKnown RBP17.66■□□□□ 0.42
PRIM1-207ENST00000552408 KCNA4P22459 653 aa17.57■□□□□ 0.4
PRIM1-207ENST00000552408 RNF39Q9H2S5 420 aa17.33■□□□□ 0.36
PRIM1-207ENST00000552408 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
PRIM1-207ENST00000552408 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
PRIM1-207ENST00000552408 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.13■□□□□ 0.33
PRIM1-207ENST00000552408 C1QBPQ07021 282 aaKnown RBP17.01■□□□□ 0.31
PRIM1-207ENST00000552408 SLC4A2P04920 1241 aa16.85■□□□□ 0.29
PRIM1-207ENST00000552408 U3KPZ7 1027 aaPredicted RBP16.85■□□□□ 0.29
PRIM1-207ENST00000552408 SPINK5Q9NQ38 1064 aaPredicted RBP16.6■□□□□ 0.25
PRIM1-207ENST00000552408 SLC4A1APQ9BWU0 796 aaKnown RBP16.55■□□□□ 0.24
PRIM1-207ENST00000552408 CAPN15O75808 1086 aa16.48■□□□□ 0.23
PRIM1-207ENST00000552408 DSG3P32926 999 aa16.34■□□□□ 0.21
PRIM1-207ENST00000552408 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
PRIM1-207ENST00000552408 MYCNP04198 464 aaPredicted RBP16.25■□□□□ 0.19
PRIM1-207ENST00000552408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.23■□□□□ 0.19
PRIM1-207ENST00000552408 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
PRIM1-207ENST00000552408 FOXD4L1Q9NU39 408 aa16.22■□□□□ 0.19
PRIM1-207ENST00000552408 ZBTB22O15209 634 aa16.21■□□□□ 0.19
PRIM1-207ENST00000552408 SAMD1Q6SPF0 538 aaPredicted RBP16.21■□□□□ 0.19
PRIM1-207ENST00000552408 ABCB7O75027 752 aa16.2■□□□□ 0.18
PRIM1-207ENST00000552408 APLP2Q06481 763 aa16.16■□□□□ 0.18
PRIM1-207ENST00000552408 ZNF219Q9P2Y4 722 aaPredicted RBP16.13■□□□□ 0.17
PRIM1-207ENST00000552408 ATF5Q9Y2D1 282 aaPredicted RBP16.03■□□□□ 0.16
PRIM1-207ENST00000552408 POLA2Q14181 598 aa15.88■□□□□ 0.13
PRIM1-207ENST00000552408 ATXN8OSP0DMR3 200 aa15.6■□□□□ 0.09
PRIM1-207ENST00000552408 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
PRIM1-207ENST00000552408 EHMT2Q96KQ7 1210 aa15.56■□□□□ 0.08
PRIM1-207ENST00000552408 RBM42Q9BTD8 480 aaKnown RBP15.44■□□□□ 0.06
PRIM1-207ENST00000552408 OSCARQ8IYS5 282 aa15.41■□□□□ 0.06
PRIM1-207ENST00000552408 ZBTB12Q9Y330 459 aaPredicted RBP15.4■□□□□ 0.06
PRIM1-207ENST00000552408 POTEHQ6S545 545 aa15.29■□□□□ 0.04
PRIM1-207ENST00000552408 MKRN4PQ13434 485 aaPredicted RBP15.27■□□□□ 0.04
PRIM1-207ENST00000552408 FBLN2P98095 1184 aa15.19■□□□□ 0.02
PRIM1-207ENST00000552408 AKT1S1Q96B36 256 aa15.18■□□□□ 0.02
PRIM1-207ENST00000552408 CHRDL2Q6WN34 429 aa15.13■□□□□ 0.01
PRIM1-207ENST00000552408 REM2Q8IYK8 340 aaPredicted RBP15.12■□□□□ 0.01
PRIM1-207ENST00000552408 SPDYE2BA6NHP3 402 aa15.02■□□□□ -0
PRIM1-207ENST00000552408 SPDYE6P0CI01 402 aa15.02■□□□□ -0
PRIM1-207ENST00000552408 SPDYE2Q495Y8 402 aa15.02■□□□□ -0
PRIM1-207ENST00000552408 PITPNM1O00562 1244 aa14.98□□□□□ -0.01
PRIM1-207ENST00000552408 ZNF692Q9BU19 519 aaPredicted RBP14.93□□□□□ -0.02
PRIM1-207ENST00000552408 SSUH2Q9Y2M2 353 aa14.89□□□□□ -0.03
PRIM1-207ENST00000552408 PIP4P2Q8N4L2 257 aa14.86□□□□□ -0.03
PRIM1-207ENST00000552408 CLEC11AQ9Y240 323 aa14.78□□□□□ -0.04
PRIM1-207ENST00000552408 PABPN1Q86U42 306 aaKnown RBP eCLIP14.76□□□□□ -0.05
PRIM1-207ENST00000552408 FXR2P51116 673 aaKnown RBP eCLIP14.75□□□□□ -0.05
PRIM1-207ENST00000552408 SPDYE1Q8NFV5 336 aaPredicted RBP14.71□□□□□ -0.05
PRIM1-207ENST00000552408 PRKAR2AP13861 404 aaKnown RBP14.58□□□□□ -0.08
PRIM1-207ENST00000552408 SPDYE4A6NLX3 237 aa14.57□□□□□ -0.08
PRIM1-207ENST00000552408 CHADLQ6NUI6 762 aa14.55□□□□□ -0.08
PRIM1-207ENST00000552408 HAX1O00165 279 aa14.51□□□□□ -0.09
PRIM1-207ENST00000552408 PRR29P0C7W0 189 aa14.5□□□□□ -0.09
PRIM1-207ENST00000552408 EVX2Q03828 476 aa14.47□□□□□ -0.09
PRIM1-207ENST00000552408 SP7Q8TDD2 431 aaPredicted RBP14.42□□□□□ -0.1
PRIM1-207ENST00000552408 C19orf67A6NJJ6 358 aa14.28□□□□□ -0.12
PRIM1-207ENST00000552408 CREBZFQ9NS37 354 aa14.26□□□□□ -0.13
PRIM1-207ENST00000552408 STAG3Q9UJ98 1225 aa14.25□□□□□ -0.13
PRIM1-207ENST00000552408 FARP1Q9Y4F1 1045 aaPredicted RBP14.25□□□□□ -0.13
PRIM1-207ENST00000552408 PROM2Q8N271 834 aa14.23□□□□□ -0.13
PRIM1-207ENST00000552408 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
PRIM1-207ENST00000552408 FKBP8Q14318 412 aa14.12□□□□□ -0.15
PRIM1-207ENST00000552408 GABBR2O75899 941 aa14.05□□□□□ -0.16
PRIM1-207ENST00000552408 MNX1P50219 401 aaPredicted RBP14.04□□□□□ -0.16
PRIM1-207ENST00000552408 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
PRIM1-207ENST00000552408 NPM1P06748 294 aaKnown RBP eCLIP13.87□□□□□ -0.19
PRIM1-207ENST00000552408 MIER1Q8N108 512 aa13.87□□□□□ -0.19
PRIM1-207ENST00000552408 ZNF579Q8NAF0 562 aaKnown RBP13.87□□□□□ -0.19
PRIM1-207ENST00000552408 PHF12Q96QT6 1004 aa13.86□□□□□ -0.19
PRIM1-207ENST00000552408 POTEIP0CG38 1075 aa13.82□□□□□ -0.2
PRIM1-207ENST00000552408 GALR2O43603 387 aaPredicted RBP13.79□□□□□ -0.2
PRIM1-207ENST00000552408 PLCD3Q8N3E9 789 aa13.78□□□□□ -0.2
PRIM1-207ENST00000552408 TSPYL2Q9H2G4 693 aaPredicted RBP13.78□□□□□ -0.2
PRIM1-207ENST00000552408 PAK3O75914 559 aaPredicted RBP13.77□□□□□ -0.21
PRIM1-207ENST00000552408 RASEFQ8IZ41 740 aa13.72□□□□□ -0.21
PRIM1-207ENST00000552408 PLEKHG5O94827 1062 aa13.7□□□□□ -0.22
PRIM1-207ENST00000552408 DCBLD2Q96PD2 775 aa13.66□□□□□ -0.22
PRIM1-207ENST00000552408 CCDC61Q9Y6R9 512 aa13.66□□□□□ -0.22
PRIM1-207ENST00000552408 CLCN6P51797 869 aa13.65□□□□□ -0.22
PRIM1-207ENST00000552408 MS4A3Q96HJ5 214 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms