RNA–Protein interactions for RNA: ENST00000552343.1

HCFC2-206, Transcript of host cell factor C2, humanhuman

TSL 2

Gene HCFC2, Length 992 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-206ENST00000552343 AEBP2Q6ZN18 517 aaPredicted RBP26.82■■□□□ 1.88
HCFC2-206ENST00000552343 CHIC1Q5VXU3 224 aa25.19■■□□□ 1.62
HCFC2-206ENST00000552343 SENP3Q9H4L4 574 aaPredicted RBP22.87■■□□□ 1.25
HCFC2-206ENST00000552343 PHF23Q9BUL5 403 aaPredicted RBP22.57■■□□□ 1.2
HCFC2-206ENST00000552343 FOXD1Q16676 465 aa21.38■■□□□ 1.01
HCFC2-206ENST00000552343 POTEDQ86YR6 584 aa20.94■□□□□ 0.94
HCFC2-206ENST00000552343 MSH5O43196 834 aa20.07■□□□□ 0.8
HCFC2-206ENST00000552343 PLPPR3Q6T4P5 718 aa20■□□□□ 0.79
HCFC2-206ENST00000552343 PIAS4Q8N2W9 510 aaPredicted RBP19.9■□□□□ 0.78
HCFC2-206ENST00000552343 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
HCFC2-206ENST00000552343 ADRA2BP18089 450 aa19.73■□□□□ 0.75
HCFC2-206ENST00000552343 MAPK8IP2Q13387 824 aaPredicted RBP18.21■□□□□ 0.51
HCFC2-206ENST00000552343 DMRT2Q9Y5R5 561 aa18.11■□□□□ 0.49
HCFC2-206ENST00000552343 SCAF1Q9H7N4 1312 aaKnown RBP18■□□□□ 0.47
HCFC2-206ENST00000552343 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
HCFC2-206ENST00000552343 PPP4R3CPQ6ZMV5 832 aa17.51■□□□□ 0.39
HCFC2-206ENST00000552343 DCAF8L1A6NGE4 600 aa17.4■□□□□ 0.38
HCFC2-206ENST00000552343 HOXD11P31277 338 aaPredicted RBP17.34■□□□□ 0.37
HCFC2-206ENST00000552343 CNKSR2Q8WXI2 1034 aa17.23■□□□□ 0.35
HCFC2-206ENST00000552343 RNF216Q9NWF9 866 aaPredicted RBP17.14■□□□□ 0.33
HCFC2-206ENST00000552343 RNF39Q9H2S5 420 aa17.12■□□□□ 0.33
HCFC2-206ENST00000552343 C1QBPQ07021 282 aaKnown RBP16.84■□□□□ 0.29
HCFC2-206ENST00000552343 DNAJC5BQ9UF47 199 aa16.76■□□□□ 0.27
HCFC2-206ENST00000552343 NCBP3Q53F19 620 aaKnown RBP16.74■□□□□ 0.27
HCFC2-206ENST00000552343 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.53■□□□□ 0.24
HCFC2-206ENST00000552343 NPM3O75607 178 aaKnown RBP16.52■□□□□ 0.24
HCFC2-206ENST00000552343 POTEHQ6S545 545 aa16.24■□□□□ 0.19
HCFC2-206ENST00000552343 U3KPZ7 1027 aaPredicted RBP16.16■□□□□ 0.18
HCFC2-206ENST00000552343 SPINK5Q9NQ38 1064 aaPredicted RBP16.02■□□□□ 0.16
HCFC2-206ENST00000552343 CAPN15O75808 1086 aa15.99■□□□□ 0.15
HCFC2-206ENST00000552343 KCNA4P22459 653 aa15.98■□□□□ 0.15
HCFC2-206ENST00000552343 DSG3P32926 999 aa15.96■□□□□ 0.15
HCFC2-206ENST00000552343 SLC4A2P04920 1241 aa15.86■□□□□ 0.13
HCFC2-206ENST00000552343 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
HCFC2-206ENST00000552343 APLP2Q06481 763 aa15.63■□□□□ 0.09
HCFC2-206ENST00000552343 ABCB7O75027 752 aa15.61■□□□□ 0.09
HCFC2-206ENST00000552343 ZNF219Q9P2Y4 722 aaPredicted RBP15.6■□□□□ 0.09
HCFC2-206ENST00000552343 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.57■□□□□ 0.08
HCFC2-206ENST00000552343 HNRNPUL2Q1KMD3 747 aaKnown RBP15.57■□□□□ 0.08
HCFC2-206ENST00000552343 SAMD1Q6SPF0 538 aaPredicted RBP15.48■□□□□ 0.07
HCFC2-206ENST00000552343 MYCNP04198 464 aaPredicted RBP15.26■□□□□ 0.03
HCFC2-206ENST00000552343 RBM42Q9BTD8 480 aaKnown RBP15.2■□□□□ 0.02
HCFC2-206ENST00000552343 POLA2Q14181 598 aa15.19■□□□□ 0.02
HCFC2-206ENST00000552343 CHRDL2Q6WN34 429 aa15.02■□□□□ -0
HCFC2-206ENST00000552343 SLC4A1APQ9BWU0 796 aaKnown RBP15.02■□□□□ -0
HCFC2-206ENST00000552343 FOXD4L1Q9NU39 408 aa14.98□□□□□ -0.01
HCFC2-206ENST00000552343 ATF5Q9Y2D1 282 aaPredicted RBP14.97□□□□□ -0.01
HCFC2-206ENST00000552343 SP7Q8TDD2 431 aaPredicted RBP14.86□□□□□ -0.03
HCFC2-206ENST00000552343 ZBTB12Q9Y330 459 aaPredicted RBP14.82□□□□□ -0.04
HCFC2-206ENST00000552343 AKT1S1Q96B36 256 aa14.81□□□□□ -0.04
HCFC2-206ENST00000552343 OSCARQ8IYS5 282 aa14.72□□□□□ -0.05
HCFC2-206ENST00000552343 ZBTB22O15209 634 aa14.7□□□□□ -0.06
HCFC2-206ENST00000552343 REM2Q8IYK8 340 aaPredicted RBP14.69□□□□□ -0.06
HCFC2-206ENST00000552343 PIP4P2Q8N4L2 257 aa14.59□□□□□ -0.07
HCFC2-206ENST00000552343 PITPNM1O00562 1244 aa14.54□□□□□ -0.08
HCFC2-206ENST00000552343 ATXN8OSP0DMR3 200 aa14.52□□□□□ -0.09
HCFC2-206ENST00000552343 HAX1O00165 279 aa14.45□□□□□ -0.1
HCFC2-206ENST00000552343 FXR2P51116 673 aaKnown RBP eCLIP14.45□□□□□ -0.1
HCFC2-206ENST00000552343 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
HCFC2-206ENST00000552343 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
HCFC2-206ENST00000552343 FBLN2P98095 1184 aa14.36□□□□□ -0.11
HCFC2-206ENST00000552343 SPDYE2Q495Y8 402 aa14.36□□□□□ -0.11
HCFC2-206ENST00000552343 EVX2Q03828 476 aa14.28□□□□□ -0.12
HCFC2-206ENST00000552343 MKRN4PQ13434 485 aaPredicted RBP14.26□□□□□ -0.13
HCFC2-206ENST00000552343 CLEC11AQ9Y240 323 aa14.19□□□□□ -0.14
HCFC2-206ENST00000552343 SPDYE1Q8NFV5 336 aaPredicted RBP14.17□□□□□ -0.14
HCFC2-206ENST00000552343 ZNF692Q9BU19 519 aaPredicted RBP14.17□□□□□ -0.14
HCFC2-206ENST00000552343 PRKAR2AP13861 404 aaKnown RBP14.16□□□□□ -0.14
HCFC2-206ENST00000552343 SSUH2Q9Y2M2 353 aa14.15□□□□□ -0.14
HCFC2-206ENST00000552343 C19orf67A6NJJ6 358 aa14.01□□□□□ -0.17
HCFC2-206ENST00000552343 CHADLQ6NUI6 762 aa13.97□□□□□ -0.17
HCFC2-206ENST00000552343 PABPN1Q86U42 306 aaKnown RBP eCLIP13.95□□□□□ -0.18
HCFC2-206ENST00000552343 LHX8Q68G74 356 aa13.93□□□□□ -0.18
HCFC2-206ENST00000552343 PRR29P0C7W0 189 aa13.91□□□□□ -0.18
HCFC2-206ENST00000552343 GABBR2O75899 941 aa13.87□□□□□ -0.19
HCFC2-206ENST00000552343 CSRNP3Q8WYN3 585 aa13.78□□□□□ -0.2
HCFC2-206ENST00000552343 PLSCR2Q9NRY7 297 aa13.73□□□□□ -0.21
HCFC2-206ENST00000552343 FARP1Q9Y4F1 1045 aaPredicted RBP13.71□□□□□ -0.21
HCFC2-206ENST00000552343 CD44P16070 742 aaKnown RBP13.69□□□□□ -0.22
HCFC2-206ENST00000552343 POTEIP0CG38 1075 aa13.6□□□□□ -0.23
HCFC2-206ENST00000552343 CREBZFQ9NS37 354 aa13.52□□□□□ -0.25
HCFC2-206ENST00000552343 CLCN6P51797 869 aa13.51□□□□□ -0.25
HCFC2-206ENST00000552343 STAG3Q9UJ98 1225 aa13.49□□□□□ -0.25
HCFC2-206ENST00000552343 EHMT2Q96KQ7 1210 aa13.47□□□□□ -0.25
HCFC2-206ENST00000552343 ZRANB1Q9UGI0 708 aa13.46□□□□□ -0.25
HCFC2-206ENST00000552343 ZNF579Q8NAF0 562 aaKnown RBP13.45□□□□□ -0.26
HCFC2-206ENST00000552343 SPDYE4A6NLX3 237 aa13.44□□□□□ -0.26
HCFC2-206ENST00000552343 DCBLD2Q96PD2 775 aa13.43□□□□□ -0.26
HCFC2-206ENST00000552343 GALR2O43603 387 aaPredicted RBP13.33□□□□□ -0.28
HCFC2-206ENST00000552343 PAK3O75914 559 aaPredicted RBP13.27□□□□□ -0.29
HCFC2-206ENST00000552343 PHF12Q96QT6 1004 aa13.26□□□□□ -0.29
HCFC2-206ENST00000552343 NPM1P06748 294 aaKnown RBP eCLIP13.24□□□□□ -0.29
HCFC2-206ENST00000552343 MNX1P50219 401 aaPredicted RBP13.24□□□□□ -0.29
HCFC2-206ENST00000552343 OTUD5Q96G74 571 aa13.21□□□□□ -0.29
HCFC2-206ENST00000552343 POTEMA6NI47 508 aa13.18□□□□□ -0.3
HCFC2-206ENST00000552343 POTEB2H3BUK9 544 aa13.15□□□□□ -0.3
HCFC2-206ENST00000552343 POTEGQ6S5H5 508 aa13.11□□□□□ -0.31
HCFC2-206ENST00000552343 PELP1Q8IZL8 1130 aaKnown RBP13.11□□□□□ -0.31
HCFC2-206ENST00000552343 PROM2Q8N271 834 aa13.07□□□□□ -0.32
HCFC2-206ENST00000552343 MS4A3Q96HJ5 214 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms