RNA–Protein interactions for RNA: ENST00000551391.1

SCAF11-215, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-215ENST00000551391 AEBP2Q6ZN18 517 aaPredicted RBP21.14■□□□□ 0.97
SCAF11-215ENST00000551391 CHIC1Q5VXU3 224 aa20.09■□□□□ 0.81
SCAF11-215ENST00000551391 SENP3Q9H4L4 574 aaPredicted RBP18.14■□□□□ 0.49
SCAF11-215ENST00000551391 PHF23Q9BUL5 403 aaPredicted RBP17.88■□□□□ 0.45
SCAF11-215ENST00000551391 FOXD1Q16676 465 aa16.85■□□□□ 0.29
SCAF11-215ENST00000551391 PLPPR3Q6T4P5 718 aa16.1■□□□□ 0.17
SCAF11-215ENST00000551391 MSH5O43196 834 aa15.86■□□□□ 0.13
SCAF11-215ENST00000551391 PIAS4Q8N2W9 510 aaPredicted RBP15.79■□□□□ 0.12
SCAF11-215ENST00000551391 PPP6R1Q9UPN7 881 aa15.7■□□□□ 0.1
SCAF11-215ENST00000551391 ADRA2BP18089 450 aa15.69■□□□□ 0.1
SCAF11-215ENST00000551391 POTEDQ86YR6 584 aa15.48■□□□□ 0.07
SCAF11-215ENST00000551391 SCAF1Q9H7N4 1312 aaKnown RBP14.47□□□□□ -0.09
SCAF11-215ENST00000551391 MAPK8IP2Q13387 824 aaPredicted RBP14.41□□□□□ -0.1
SCAF11-215ENST00000551391 DMRT2Q9Y5R5 561 aa14.34□□□□□ -0.11
SCAF11-215ENST00000551391 PPP4R3CPQ6ZMV5 832 aa14.08□□□□□ -0.16
SCAF11-215ENST00000551391 DCAF8L1A6NGE4 600 aa13.86□□□□□ -0.19
SCAF11-215ENST00000551391 CNKSR2Q8WXI2 1034 aa13.84□□□□□ -0.19
SCAF11-215ENST00000551391 HOXD11P31277 338 aaPredicted RBP13.79□□□□□ -0.2
SCAF11-215ENST00000551391 RNF216Q9NWF9 866 aaPredicted RBP13.72□□□□□ -0.21
SCAF11-215ENST00000551391 CACNB1Q02641 598 aaPredicted RBP13.66□□□□□ -0.22
SCAF11-215ENST00000551391 NCBP3Q53F19 620 aaKnown RBP13.6□□□□□ -0.23
SCAF11-215ENST00000551391 RNF39Q9H2S5 420 aa13.47□□□□□ -0.25
SCAF11-215ENST00000551391 DNAJC5BQ9UF47 199 aa13.34□□□□□ -0.27
SCAF11-215ENST00000551391 C1QBPQ07021 282 aaKnown RBP13.32□□□□□ -0.28
SCAF11-215ENST00000551391 NPM3O75607 178 aaKnown RBP13.3□□□□□ -0.28
SCAF11-215ENST00000551391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.23□□□□□ -0.29
SCAF11-215ENST00000551391 KCNA4P22459 653 aa13.01□□□□□ -0.33
SCAF11-215ENST00000551391 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
SCAF11-215ENST00000551391 CAPN15O75808 1086 aa12.75□□□□□ -0.37
SCAF11-215ENST00000551391 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-215ENST00000551391 SLC4A2P04920 1241 aa12.68□□□□□ -0.38
SCAF11-215ENST00000551391 APLP2Q06481 763 aa12.64□□□□□ -0.39
SCAF11-215ENST00000551391 DSG3P32926 999 aa12.61□□□□□ -0.39
SCAF11-215ENST00000551391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.59□□□□□ -0.39
SCAF11-215ENST00000551391 HNRNPUL2Q1KMD3 747 aaKnown RBP12.59□□□□□ -0.39
SCAF11-215ENST00000551391 TRHP20396 242 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-215ENST00000551391 ZNF219Q9P2Y4 722 aaPredicted RBP12.5□□□□□ -0.41
SCAF11-215ENST00000551391 SAMD1Q6SPF0 538 aaPredicted RBP12.48□□□□□ -0.41
SCAF11-215ENST00000551391 ABCB7O75027 752 aa12.41□□□□□ -0.42
SCAF11-215ENST00000551391 MYCNP04198 464 aaPredicted RBP12.35□□□□□ -0.43
SCAF11-215ENST00000551391 SLC4A1APQ9BWU0 796 aaKnown RBP12.33□□□□□ -0.44
SCAF11-215ENST00000551391 FOXD4L1Q9NU39 408 aa12.19□□□□□ -0.46
SCAF11-215ENST00000551391 POLA2Q14181 598 aa12.17□□□□□ -0.46
SCAF11-215ENST00000551391 POTEHQ6S545 545 aa12.16□□□□□ -0.46
SCAF11-215ENST00000551391 RBM42Q9BTD8 480 aaKnown RBP12.11□□□□□ -0.47
SCAF11-215ENST00000551391 ATF5Q9Y2D1 282 aaPredicted RBP11.99□□□□□ -0.49
SCAF11-215ENST00000551391 ZBTB12Q9Y330 459 aaPredicted RBP11.96□□□□□ -0.49
SCAF11-215ENST00000551391 ZBTB22O15209 634 aa11.9□□□□□ -0.5
SCAF11-215ENST00000551391 ATXN8OSP0DMR3 200 aa11.82□□□□□ -0.52
SCAF11-215ENST00000551391 CHRDL2Q6WN34 429 aa11.81□□□□□ -0.52
SCAF11-215ENST00000551391 AKT1S1Q96B36 256 aa11.79□□□□□ -0.52
SCAF11-215ENST00000551391 OSCARQ8IYS5 282 aa11.75□□□□□ -0.53
SCAF11-215ENST00000551391 REM2Q8IYK8 340 aaPredicted RBP11.66□□□□□ -0.54
SCAF11-215ENST00000551391 FBLN2P98095 1184 aa11.65□□□□□ -0.54
SCAF11-215ENST00000551391 SPDYE2BA6NHP3 402 aa11.55□□□□□ -0.56
SCAF11-215ENST00000551391 SPDYE6P0CI01 402 aa11.55□□□□□ -0.56
SCAF11-215ENST00000551391 SPDYE2Q495Y8 402 aa11.55□□□□□ -0.56
SCAF11-215ENST00000551391 EHMT2Q96KQ7 1210 aa11.54□□□□□ -0.56
SCAF11-215ENST00000551391 PITPNM1O00562 1244 aa11.52□□□□□ -0.57
SCAF11-215ENST00000551391 PIP4P2Q8N4L2 257 aa11.51□□□□□ -0.57
SCAF11-215ENST00000551391 MKRN4PQ13434 485 aaPredicted RBP11.44□□□□□ -0.58
SCAF11-215ENST00000551391 FXR2P51116 673 aaKnown RBP eCLIP11.43□□□□□ -0.58
SCAF11-215ENST00000551391 ZNF692Q9BU19 519 aaPredicted RBP11.43□□□□□ -0.58
SCAF11-215ENST00000551391 CSRNP3Q8WYN3 585 aa11.41□□□□□ -0.58
SCAF11-215ENST00000551391 SP7Q8TDD2 431 aaPredicted RBP11.39□□□□□ -0.59
SCAF11-215ENST00000551391 HAX1O00165 279 aa11.38□□□□□ -0.59
SCAF11-215ENST00000551391 CLEC11AQ9Y240 323 aa11.38□□□□□ -0.59
SCAF11-215ENST00000551391 SPDYE1Q8NFV5 336 aaPredicted RBP11.37□□□□□ -0.59
SCAF11-215ENST00000551391 SSUH2Q9Y2M2 353 aa11.34□□□□□ -0.59
SCAF11-215ENST00000551391 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
SCAF11-215ENST00000551391 PABPN1Q86U42 306 aaKnown RBP eCLIP11.24□□□□□ -0.61
SCAF11-215ENST00000551391 PRR29P0C7W0 189 aa11.19□□□□□ -0.62
SCAF11-215ENST00000551391 EVX2Q03828 476 aa11.12□□□□□ -0.63
SCAF11-215ENST00000551391 CHADLQ6NUI6 762 aa11.11□□□□□ -0.63
SCAF11-215ENST00000551391 C19orf67A6NJJ6 358 aa11.06□□□□□ -0.64
SCAF11-215ENST00000551391 STAG3Q9UJ98 1225 aa10.97□□□□□ -0.65
SCAF11-215ENST00000551391 SPDYE4A6NLX3 237 aa10.96□□□□□ -0.65
SCAF11-215ENST00000551391 FARP1Q9Y4F1 1045 aaPredicted RBP10.95□□□□□ -0.66
SCAF11-215ENST00000551391 GABBR2O75899 941 aa10.93□□□□□ -0.66
SCAF11-215ENST00000551391 CD44P16070 742 aaKnown RBP10.91□□□□□ -0.66
SCAF11-215ENST00000551391 CREBZFQ9NS37 354 aa10.82□□□□□ -0.68
SCAF11-215ENST00000551391 CLCN6P51797 869 aa10.8□□□□□ -0.68
SCAF11-215ENST00000551391 ZRANB1Q9UGI0 708 aa10.76□□□□□ -0.69
SCAF11-215ENST00000551391 PAK3O75914 559 aaPredicted RBP10.73□□□□□ -0.69
SCAF11-215ENST00000551391 NPM1P06748 294 aaKnown RBP eCLIP10.72□□□□□ -0.69
SCAF11-215ENST00000551391 ZNF579Q8NAF0 562 aaKnown RBP10.7□□□□□ -0.7
SCAF11-215ENST00000551391 DCBLD2Q96PD2 775 aa10.7□□□□□ -0.7
SCAF11-215ENST00000551391 LHX8Q68G74 356 aa10.69□□□□□ -0.7
SCAF11-215ENST00000551391 POTEIP0CG38 1075 aa10.64□□□□□ -0.71
SCAF11-215ENST00000551391 PROM2Q8N271 834 aa10.6□□□□□ -0.71
SCAF11-215ENST00000551391 MNX1P50219 401 aaPredicted RBP10.58□□□□□ -0.72
SCAF11-215ENST00000551391 GALR2O43603 387 aaPredicted RBP10.57□□□□□ -0.72
SCAF11-215ENST00000551391 PLEKHG5O94827 1062 aa10.56□□□□□ -0.72
SCAF11-215ENST00000551391 PHF12Q96QT6 1004 aa10.56□□□□□ -0.72
SCAF11-215ENST00000551391 MIER1Q8N108 512 aa10.51□□□□□ -0.73
SCAF11-215ENST00000551391 TSPYL2Q9H2G4 693 aaPredicted RBP10.49□□□□□ -0.73
SCAF11-215ENST00000551391 PLCD3Q8N3E9 789 aa10.43□□□□□ -0.74
SCAF11-215ENST00000551391 MS4A3Q96HJ5 214 aa10.42□□□□□ -0.74
SCAF11-215ENST00000551391 FKBP8Q14318 412 aa10.38□□□□□ -0.75
SCAF11-215ENST00000551391 CCDC61Q9Y6R9 512 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms