RNA–Protein interactions for RNA: ENST00000550335.5

HCFC2-204, Transcript of host cell factor C2, humanhuman

TSL 5

Gene HCFC2, Length 1,223 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-204ENST00000550335 CHIC1Q5VXU3 224 aa22.14■■□□□ 1.13
HCFC2-204ENST00000550335 AEBP2Q6ZN18 517 aaPredicted RBP22.01■■□□□ 1.11
HCFC2-204ENST00000550335 PHF23Q9BUL5 403 aaPredicted RBP19.58■□□□□ 0.72
HCFC2-204ENST00000550335 SENP3Q9H4L4 574 aaPredicted RBP18.53■□□□□ 0.56
HCFC2-204ENST00000550335 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
HCFC2-204ENST00000550335 ADRA2BP18089 450 aa17.22■□□□□ 0.35
HCFC2-204ENST00000550335 FOXD1Q16676 465 aa17.15■□□□□ 0.34
HCFC2-204ENST00000550335 PPP6R1Q9UPN7 881 aa17.09■□□□□ 0.33
HCFC2-204ENST00000550335 KCNA4P22459 653 aa16.72■□□□□ 0.27
HCFC2-204ENST00000550335 EHMT2Q96KQ7 1210 aa16.54■□□□□ 0.24
HCFC2-204ENST00000550335 PIAS4Q8N2W9 510 aaPredicted RBP16.41■□□□□ 0.22
HCFC2-204ENST00000550335 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
HCFC2-204ENST00000550335 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
HCFC2-204ENST00000550335 NCBP3Q53F19 620 aaKnown RBP16.06■□□□□ 0.16
HCFC2-204ENST00000550335 CSRNP3Q8WYN3 585 aa15.87■□□□□ 0.13
HCFC2-204ENST00000550335 NPM3O75607 178 aaKnown RBP15.8■□□□□ 0.12
HCFC2-204ENST00000550335 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
HCFC2-204ENST00000550335 CNKSR2Q8WXI2 1034 aa15.62■□□□□ 0.09
HCFC2-204ENST00000550335 MSH5O43196 834 aa15.5■□□□□ 0.07
HCFC2-204ENST00000550335 MAPK8IP2Q13387 824 aaPredicted RBP15.38■□□□□ 0.05
HCFC2-204ENST00000550335 ZBTB22O15209 634 aa15.36■□□□□ 0.05
HCFC2-204ENST00000550335 FOXD4L1Q9NU39 408 aa15.14■□□□□ 0.01
HCFC2-204ENST00000550335 RNF216Q9NWF9 866 aaPredicted RBP15.11■□□□□ 0.01
HCFC2-204ENST00000550335 DNAJC5BQ9UF47 199 aa14.96□□□□□ -0.01
HCFC2-204ENST00000550335 DMRT2Q9Y5R5 561 aa14.89□□□□□ -0.03
HCFC2-204ENST00000550335 HOXD11P31277 338 aaPredicted RBP14.82□□□□□ -0.04
HCFC2-204ENST00000550335 SLC4A2P04920 1241 aa14.72□□□□□ -0.05
HCFC2-204ENST00000550335 MYCNP04198 464 aaPredicted RBP14.57□□□□□ -0.08
HCFC2-204ENST00000550335 DCAF8L1A6NGE4 600 aa14.47□□□□□ -0.09
HCFC2-204ENST00000550335 ATXN8OSP0DMR3 200 aa14.47□□□□□ -0.09
HCFC2-204ENST00000550335 FKBP8Q14318 412 aa14.4□□□□□ -0.1
HCFC2-204ENST00000550335 RTN4Q9NQC3 1192 aaKnown RBP14.32□□□□□ -0.12
HCFC2-204ENST00000550335 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.31□□□□□ -0.12
HCFC2-204ENST00000550335 AMER1Q5JTC6 1135 aaPredicted RBP14.28□□□□□ -0.12
HCFC2-204ENST00000550335 ATF5Q9Y2D1 282 aaPredicted RBP14.19□□□□□ -0.14
HCFC2-204ENST00000550335 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.1□□□□□ -0.15
HCFC2-204ENST00000550335 HNRNPUL2Q1KMD3 747 aaKnown RBP14.1□□□□□ -0.15
HCFC2-204ENST00000550335 SLC24A1O60721 1099 aa14.09□□□□□ -0.15
HCFC2-204ENST00000550335 SAMD1Q6SPF0 538 aaPredicted RBP14.09□□□□□ -0.15
HCFC2-204ENST00000550335 U3KPZ7 1027 aaPredicted RBP14.05□□□□□ -0.16
HCFC2-204ENST00000550335 ZNF219Q9P2Y4 722 aaPredicted RBP13.87□□□□□ -0.19
HCFC2-204ENST00000550335 POTEDQ86YR6 584 aa13.84□□□□□ -0.19
HCFC2-204ENST00000550335 APLP2Q06481 763 aa13.8□□□□□ -0.2
HCFC2-204ENST00000550335 SPDYE4A6NLX3 237 aa13.66□□□□□ -0.22
HCFC2-204ENST00000550335 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
HCFC2-204ENST00000550335 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
HCFC2-204ENST00000550335 FBLN2P98095 1184 aa13.56□□□□□ -0.24
HCFC2-204ENST00000550335 MKRN4PQ13434 485 aaPredicted RBP13.55□□□□□ -0.24
HCFC2-204ENST00000550335 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
HCFC2-204ENST00000550335 CAPN15O75808 1086 aa13.5□□□□□ -0.25
HCFC2-204ENST00000550335 POLA2Q14181 598 aa13.5□□□□□ -0.25
HCFC2-204ENST00000550335 VASPP50552 380 aaPredicted RBP13.4□□□□□ -0.26
HCFC2-204ENST00000550335 DCAF8L2P0C7V8 631 aa13.36□□□□□ -0.27
HCFC2-204ENST00000550335 RNF39Q9H2S5 420 aa13.34□□□□□ -0.27
HCFC2-204ENST00000550335 PROM2Q8N271 834 aa13.33□□□□□ -0.28
HCFC2-204ENST00000550335 ABCB7O75027 752 aa13.32□□□□□ -0.28
HCFC2-204ENST00000550335 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
HCFC2-204ENST00000550335 ZBTB12Q9Y330 459 aaPredicted RBP13.22□□□□□ -0.29
HCFC2-204ENST00000550335 C1QBPQ07021 282 aaKnown RBP13.21□□□□□ -0.29
HCFC2-204ENST00000550335 PLCB2Q00722 1185 aa13.18□□□□□ -0.3
HCFC2-204ENST00000550335 KLHL34Q8N239 644 aa13.17□□□□□ -0.3
HCFC2-204ENST00000550335 HAP1P54257 671 aaPredicted RBP13.15□□□□□ -0.3
HCFC2-204ENST00000550335 ZNF692Q9BU19 519 aaPredicted RBP13.1□□□□□ -0.31
HCFC2-204ENST00000550335 PKD2Q13563 968 aa13.09□□□□□ -0.31
HCFC2-204ENST00000550335 SPOCK2Q92563 424 aa13.03□□□□□ -0.32
HCFC2-204ENST00000550335 PLCD3Q8N3E9 789 aa13.01□□□□□ -0.33
HCFC2-204ENST00000550335 OSCARQ8IYS5 282 aa13□□□□□ -0.33
HCFC2-204ENST00000550335 ECM2O94769 699 aaPredicted RBP12.98□□□□□ -0.33
HCFC2-204ENST00000550335 DSG3P32926 999 aa12.98□□□□□ -0.33
HCFC2-204ENST00000550335 STAG3Q9UJ98 1225 aa12.97□□□□□ -0.33
HCFC2-204ENST00000550335 MIER1Q8N108 512 aa12.95□□□□□ -0.34
HCFC2-204ENST00000550335 PABPN1Q86U42 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
HCFC2-204ENST00000550335 SPDYE2BA6NHP3 402 aa12.93□□□□□ -0.34
HCFC2-204ENST00000550335 SPDYE6P0CI01 402 aa12.93□□□□□ -0.34
HCFC2-204ENST00000550335 SPDYE2Q495Y8 402 aa12.93□□□□□ -0.34
HCFC2-204ENST00000550335 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.89□□□□□ -0.35
HCFC2-204ENST00000550335 SSUH2Q9Y2M2 353 aa12.86□□□□□ -0.35
HCFC2-204ENST00000550335 PAXIP1Q6ZW49 1069 aaPredicted RBP12.84□□□□□ -0.35
HCFC2-204ENST00000550335 CFAP44Q96MT7 982 aa12.84□□□□□ -0.35
HCFC2-204ENST00000550335 BBXQ8WY36 941 aaPredicted RBP12.82□□□□□ -0.36
HCFC2-204ENST00000550335 CIZ1Q9ULV3 898 aaPredicted RBP12.82□□□□□ -0.36
HCFC2-204ENST00000550335 PLEKHG5O94827 1062 aa12.8□□□□□ -0.36
HCFC2-204ENST00000550335 NPM1P06748 294 aaKnown RBP eCLIP12.8□□□□□ -0.36
HCFC2-204ENST00000550335 VSIG10Q8N0Z9 540 aa12.8□□□□□ -0.36
HCFC2-204ENST00000550335 RGL2O15211 777 aa12.79□□□□□ -0.36
HCFC2-204ENST00000550335 BCANQ96GW7 911 aa12.78□□□□□ -0.36
HCFC2-204ENST00000550335 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
HCFC2-204ENST00000550335 CHGAP10645 457 aaKnown RBP12.68□□□□□ -0.38
HCFC2-204ENST00000550335 SPRYD3Q8NCJ5 442 aa12.67□□□□□ -0.38
HCFC2-204ENST00000550335 PRKCSHP14314 528 aaPredicted RBP12.66□□□□□ -0.38
HCFC2-204ENST00000550335 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
HCFC2-204ENST00000550335 CACNB1Q02641 598 aaPredicted RBP12.62□□□□□ -0.39
HCFC2-204ENST00000550335 TSHZ2Q9NRE2 1034 aa12.59□□□□□ -0.39
HCFC2-204ENST00000550335 TAOK2Q9UL54 1235 aa12.58□□□□□ -0.4
HCFC2-204ENST00000550335 TRIM41Q8WV44 630 aa12.52□□□□□ -0.41
HCFC2-204ENST00000550335 DCAF8Q5TAQ9 597 aa12.51□□□□□ -0.41
HCFC2-204ENST00000550335 GSE1Q14687 1217 aa12.49□□□□□ -0.41
HCFC2-204ENST00000550335 TPRNQ4KMQ1 711 aa12.48□□□□□ -0.41
HCFC2-204ENST00000550335 CLEC11AQ9Y240 323 aa12.48□□□□□ -0.41
HCFC2-204ENST00000550335 HS6ST3Q8IZP7 471 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 449.8 ms