RNA–Protein interactions for RNA: ENST00000549580.1

SNRPF-202, Transcript of small nuclear ribonucleoprotein polypeptide F, humanhuman

TSL 2

Gene SNRPF, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPF-202ENST00000549580 AEBP2Q6ZN18 517 aaPredicted RBP29.27■■■□□ 2.28
SNRPF-202ENST00000549580 CHIC1Q5VXU3 224 aa27.25■■□□□ 1.95
SNRPF-202ENST00000549580 SENP3Q9H4L4 574 aaPredicted RBP24.99■■□□□ 1.59
SNRPF-202ENST00000549580 PHF23Q9BUL5 403 aaPredicted RBP24.58■■□□□ 1.53
SNRPF-202ENST00000549580 FOXD1Q16676 465 aa23.4■■□□□ 1.34
SNRPF-202ENST00000549580 POTEDQ86YR6 584 aa22.59■■□□□ 1.21
SNRPF-202ENST00000549580 MSH5O43196 834 aa22.08■■□□□ 1.13
SNRPF-202ENST00000549580 PIAS4Q8N2W9 510 aaPredicted RBP21.68■■□□□ 1.06
SNRPF-202ENST00000549580 PPP6R1Q9UPN7 881 aa21.44■■□□□ 1.02
SNRPF-202ENST00000549580 PLPPR3Q6T4P5 718 aa21.42■■□□□ 1.02
SNRPF-202ENST00000549580 ADRA2BP18089 450 aa21.3■■□□□ 1
SNRPF-202ENST00000549580 DMRT2Q9Y5R5 561 aa19.76■□□□□ 0.75
SNRPF-202ENST00000549580 MAPK8IP2Q13387 824 aaPredicted RBP19.75■□□□□ 0.75
SNRPF-202ENST00000549580 SCAF1Q9H7N4 1312 aaKnown RBP19.42■□□□□ 0.7
SNRPF-202ENST00000549580 CACNB1Q02641 598 aaPredicted RBP19.27■□□□□ 0.68
SNRPF-202ENST00000549580 DCAF8L1A6NGE4 600 aa18.86■□□□□ 0.61
SNRPF-202ENST00000549580 RNF39Q9H2S5 420 aa18.83■□□□□ 0.6
SNRPF-202ENST00000549580 HOXD11P31277 338 aaPredicted RBP18.81■□□□□ 0.6
SNRPF-202ENST00000549580 PPP4R3CPQ6ZMV5 832 aa18.71■□□□□ 0.59
SNRPF-202ENST00000549580 CNKSR2Q8WXI2 1034 aa18.49■□□□□ 0.55
SNRPF-202ENST00000549580 RNF216Q9NWF9 866 aaPredicted RBP18.49■□□□□ 0.55
SNRPF-202ENST00000549580 C1QBPQ07021 282 aaKnown RBP18.48■□□□□ 0.55
SNRPF-202ENST00000549580 DNAJC5BQ9UF47 199 aa18.29■□□□□ 0.52
SNRPF-202ENST00000549580 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.82■□□□□ 0.44
SNRPF-202ENST00000549580 NCBP3Q53F19 620 aaKnown RBP17.75■□□□□ 0.43
SNRPF-202ENST00000549580 NPM3O75607 178 aaKnown RBP17.58■□□□□ 0.4
SNRPF-202ENST00000549580 POTEHQ6S545 545 aa17.56■□□□□ 0.4
SNRPF-202ENST00000549580 U3KPZ7 1027 aaPredicted RBP17.48■□□□□ 0.39
SNRPF-202ENST00000549580 DSG3P32926 999 aa17.43■□□□□ 0.38
SNRPF-202ENST00000549580 SPINK5Q9NQ38 1064 aaPredicted RBP17.38■□□□□ 0.37
SNRPF-202ENST00000549580 CAPN15O75808 1086 aa17.31■□□□□ 0.36
SNRPF-202ENST00000549580 SLC4A2P04920 1241 aa16.97■□□□□ 0.31
SNRPF-202ENST00000549580 TRHP20396 242 aaPredicted RBP16.9■□□□□ 0.3
SNRPF-202ENST00000549580 ABCB7O75027 752 aa16.89■□□□□ 0.29
SNRPF-202ENST00000549580 ZNF219Q9P2Y4 722 aaPredicted RBP16.87■□□□□ 0.29
SNRPF-202ENST00000549580 APLP2Q06481 763 aa16.82■□□□□ 0.28
SNRPF-202ENST00000549580 KCNA4P22459 653 aa16.72■□□□□ 0.27
SNRPF-202ENST00000549580 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.69■□□□□ 0.26
SNRPF-202ENST00000549580 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
SNRPF-202ENST00000549580 SAMD1Q6SPF0 538 aaPredicted RBP16.59■□□□□ 0.25
SNRPF-202ENST00000549580 RBM42Q9BTD8 480 aaKnown RBP16.59■□□□□ 0.25
SNRPF-202ENST00000549580 CHRDL2Q6WN34 429 aa16.48■□□□□ 0.23
SNRPF-202ENST00000549580 POLA2Q14181 598 aa16.33■□□□□ 0.2
SNRPF-202ENST00000549580 MYCNP04198 464 aaPredicted RBP16.25■□□□□ 0.19
SNRPF-202ENST00000549580 SP7Q8TDD2 431 aaPredicted RBP16.19■□□□□ 0.18
SNRPF-202ENST00000549580 AKT1S1Q96B36 256 aa16.11■□□□□ 0.17
SNRPF-202ENST00000549580 PIP4P2Q8N4L2 257 aa15.99■□□□□ 0.15
SNRPF-202ENST00000549580 ATF5Q9Y2D1 282 aaPredicted RBP15.97■□□□□ 0.15
SNRPF-202ENST00000549580 REM2Q8IYK8 340 aaPredicted RBP15.96■□□□□ 0.15
SNRPF-202ENST00000549580 ZBTB12Q9Y330 459 aaPredicted RBP15.94■□□□□ 0.14
SNRPF-202ENST00000549580 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
SNRPF-202ENST00000549580 PITPNM1O00562 1244 aa15.82■□□□□ 0.12
SNRPF-202ENST00000549580 FXR2P51116 673 aaKnown RBP eCLIP15.81■□□□□ 0.12
SNRPF-202ENST00000549580 HAX1O00165 279 aa15.78■□□□□ 0.12
SNRPF-202ENST00000549580 FOXD4L1Q9NU39 408 aa15.76■□□□□ 0.11
SNRPF-202ENST00000549580 EVX2Q03828 476 aa15.64■□□□□ 0.09
SNRPF-202ENST00000549580 SLC4A1APQ9BWU0 796 aaKnown RBP15.62■□□□□ 0.09
SNRPF-202ENST00000549580 SPDYE2BA6NHP3 402 aa15.42■□□□□ 0.06
SNRPF-202ENST00000549580 SPDYE6P0CI01 402 aa15.42■□□□□ 0.06
SNRPF-202ENST00000549580 SPDYE2Q495Y8 402 aa15.42■□□□□ 0.06
SNRPF-202ENST00000549580 ZBTB22O15209 634 aa15.4■□□□□ 0.06
SNRPF-202ENST00000549580 PRKAR2AP13861 404 aaKnown RBP15.37■□□□□ 0.05
SNRPF-202ENST00000549580 ATXN8OSP0DMR3 200 aa15.34■□□□□ 0.05
SNRPF-202ENST00000549580 C19orf67A6NJJ6 358 aa15.33■□□□□ 0.04
SNRPF-202ENST00000549580 FBLN2P98095 1184 aa15.28■□□□□ 0.04
SNRPF-202ENST00000549580 SPDYE1Q8NFV5 336 aaPredicted RBP15.28■□□□□ 0.04
SNRPF-202ENST00000549580 CLEC11AQ9Y240 323 aa15.26■□□□□ 0.03
SNRPF-202ENST00000549580 GABBR2O75899 941 aa15.21■□□□□ 0.03
SNRPF-202ENST00000549580 MKRN4PQ13434 485 aaPredicted RBP15.21■□□□□ 0.03
SNRPF-202ENST00000549580 SSUH2Q9Y2M2 353 aa15.2■□□□□ 0.02
SNRPF-202ENST00000549580 LHX8Q68G74 356 aa15.15■□□□□ 0.02
SNRPF-202ENST00000549580 ZNF692Q9BU19 519 aaPredicted RBP15.11■□□□□ 0.01
SNRPF-202ENST00000549580 CHADLQ6NUI6 762 aa15.07■□□□□ 0
SNRPF-202ENST00000549580 POTEIP0CG38 1075 aa14.94□□□□□ -0.02
SNRPF-202ENST00000549580 PRR29P0C7W0 189 aa14.93□□□□□ -0.02
SNRPF-202ENST00000549580 PABPN1Q86U42 306 aaKnown RBP eCLIP14.89□□□□□ -0.03
SNRPF-202ENST00000549580 CD44P16070 742 aaKnown RBP14.84□□□□□ -0.03
SNRPF-202ENST00000549580 FARP1Q9Y4F1 1045 aaPredicted RBP14.8□□□□□ -0.04
SNRPF-202ENST00000549580 CLCN6P51797 869 aa14.75□□□□□ -0.05
SNRPF-202ENST00000549580 ZNF579Q8NAF0 562 aaKnown RBP14.63□□□□□ -0.07
SNRPF-202ENST00000549580 DCBLD2Q96PD2 775 aa14.62□□□□□ -0.07
SNRPF-202ENST00000549580 PLSCR2Q9NRY7 297 aa14.61□□□□□ -0.07
SNRPF-202ENST00000549580 ZRANB1Q9UGI0 708 aa14.53□□□□□ -0.08
SNRPF-202ENST00000549580 GALR2O43603 387 aaPredicted RBP14.49□□□□□ -0.09
SNRPF-202ENST00000549580 CREBZFQ9NS37 354 aa14.49□□□□□ -0.09
SNRPF-202ENST00000549580 OTUD5Q96G74 571 aa14.48□□□□□ -0.09
SNRPF-202ENST00000549580 POTEB2H3BUK9 544 aa14.43□□□□□ -0.1
SNRPF-202ENST00000549580 STAG3Q9UJ98 1225 aa14.32□□□□□ -0.12
SNRPF-202ENST00000549580 POTEMA6NI47 508 aa14.31□□□□□ -0.12
SNRPF-202ENST00000549580 PHF12Q96QT6 1004 aa14.31□□□□□ -0.12
SNRPF-202ENST00000549580 PELP1Q8IZL8 1130 aaKnown RBP14.27□□□□□ -0.13
SNRPF-202ENST00000549580 PAK3O75914 559 aaPredicted RBP14.24□□□□□ -0.13
SNRPF-202ENST00000549580 POTEGQ6S5H5 508 aa14.24□□□□□ -0.13
SNRPF-202ENST00000549580 MNX1P50219 401 aaPredicted RBP14.2□□□□□ -0.14
SNRPF-202ENST00000549580 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
SNRPF-202ENST00000549580 ASTLQ6HA08 431 aaPredicted RBP14.15□□□□□ -0.14
SNRPF-202ENST00000549580 POTEJP0CG39 1038 aa14.14□□□□□ -0.15
SNRPF-202ENST00000549580 NPM1P06748 294 aaKnown RBP eCLIP14.13□□□□□ -0.15
SNRPF-202ENST00000549580 METRNQ9UJH8 293 aa14.13□□□□□ -0.15
SNRPF-202ENST00000549580 SPDYE4A6NLX3 237 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms