RNA–Protein interactions for RNA: ENST00000548939.1

CNOT2-216, Transcript of CCR4-NOT transcription complex subunit 2, humanhuman

TSL 2

Gene CNOT2, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT2-216ENST00000548939 AEBP2Q6ZN18 517 aaPredicted RBP28.96■■■□□ 2.23
CNOT2-216ENST00000548939 CHIC1Q5VXU3 224 aa27.7■■■□□ 2.02
CNOT2-216ENST00000548939 SENP3Q9H4L4 574 aaPredicted RBP24.7■■□□□ 1.54
CNOT2-216ENST00000548939 PHF23Q9BUL5 403 aaPredicted RBP24.41■■□□□ 1.5
CNOT2-216ENST00000548939 FOXD1Q16676 465 aa22.98■■□□□ 1.27
CNOT2-216ENST00000548939 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
CNOT2-216ENST00000548939 PPP6R1Q9UPN7 881 aa21.63■■□□□ 1.05
CNOT2-216ENST00000548939 ADRA2BP18089 450 aa21.58■■□□□ 1.05
CNOT2-216ENST00000548939 PIAS4Q8N2W9 510 aaPredicted RBP21.54■■□□□ 1.04
CNOT2-216ENST00000548939 MSH5O43196 834 aa21.46■■□□□ 1.03
CNOT2-216ENST00000548939 POTEDQ86YR6 584 aa20.6■□□□□ 0.89
CNOT2-216ENST00000548939 SCAF1Q9H7N4 1312 aaKnown RBP19.78■□□□□ 0.76
CNOT2-216ENST00000548939 MAPK8IP2Q13387 824 aaPredicted RBP19.77■□□□□ 0.76
CNOT2-216ENST00000548939 DMRT2Q9Y5R5 561 aa19.61■□□□□ 0.73
CNOT2-216ENST00000548939 PPP4R3CPQ6ZMV5 832 aa19.51■□□□□ 0.71
CNOT2-216ENST00000548939 CNKSR2Q8WXI2 1034 aa19.1■□□□□ 0.65
CNOT2-216ENST00000548939 HOXD11P31277 338 aaPredicted RBP18.95■□□□□ 0.62
CNOT2-216ENST00000548939 RNF216Q9NWF9 866 aaPredicted RBP18.88■□□□□ 0.61
CNOT2-216ENST00000548939 NCBP3Q53F19 620 aaKnown RBP18.85■□□□□ 0.61
CNOT2-216ENST00000548939 DCAF8L1A6NGE4 600 aa18.84■□□□□ 0.61
CNOT2-216ENST00000548939 NPM3O75607 178 aaKnown RBP18.54■□□□□ 0.56
CNOT2-216ENST00000548939 KCNA4P22459 653 aa18.36■□□□□ 0.53
CNOT2-216ENST00000548939 CACNB1Q02641 598 aaPredicted RBP18.31■□□□□ 0.52
CNOT2-216ENST00000548939 RNF39Q9H2S5 420 aa18.31■□□□□ 0.52
CNOT2-216ENST00000548939 DNAJC5BQ9UF47 199 aa18.26■□□□□ 0.51
CNOT2-216ENST00000548939 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.11■□□□□ 0.499e-7■□□□□ 9.1
CNOT2-216ENST00000548939 C1QBPQ07021 282 aaKnown RBP18.07■□□□□ 0.48
CNOT2-216ENST00000548939 U3KPZ7 1027 aaPredicted RBP17.71■□□□□ 0.43
CNOT2-216ENST00000548939 SLC4A2P04920 1241 aa17.65■□□□□ 0.42
CNOT2-216ENST00000548939 SPINK5Q9NQ38 1064 aaPredicted RBP17.4■□□□□ 0.38
CNOT2-216ENST00000548939 CAPN15O75808 1086 aa17.39■□□□□ 0.37
CNOT2-216ENST00000548939 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
CNOT2-216ENST00000548939 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.31■□□□□ 0.36
CNOT2-216ENST00000548939 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
CNOT2-216ENST00000548939 APLP2Q06481 763 aa17.28■□□□□ 0.36
CNOT2-216ENST00000548939 DSG3P32926 999 aa17.21■□□□□ 0.35
CNOT2-216ENST00000548939 SAMD1Q6SPF0 538 aaPredicted RBP17.21■□□□□ 0.35
CNOT2-216ENST00000548939 MYCNP04198 464 aaPredicted RBP17.16■□□□□ 0.34
CNOT2-216ENST00000548939 TRHP20396 242 aaPredicted RBP17.16■□□□□ 0.34
CNOT2-216ENST00000548939 ZNF219Q9P2Y4 722 aaPredicted RBP17.12■□□□□ 0.33
CNOT2-216ENST00000548939 FOXD4L1Q9NU39 408 aa17.08■□□□□ 0.32
CNOT2-216ENST00000548939 ABCB7O75027 752 aa17■□□□□ 0.31
CNOT2-216ENST00000548939 ZBTB22O15209 634 aa16.87■□□□□ 0.29
CNOT2-216ENST00000548939 POLA2Q14181 598 aa16.73■□□□□ 0.27
CNOT2-216ENST00000548939 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
CNOT2-216ENST00000548939 ATXN8OSP0DMR3 200 aa16.54■□□□□ 0.24
CNOT2-216ENST00000548939 RBM42Q9BTD8 480 aaKnown RBP16.44■□□□□ 0.22
CNOT2-216ENST00000548939 ZBTB12Q9Y330 459 aaPredicted RBP16.42■□□□□ 0.22
CNOT2-216ENST00000548939 CSRNP3Q8WYN3 585 aa16.27■□□□□ 0.2
CNOT2-216ENST00000548939 EHMT2Q96KQ7 1210 aa16.2■□□□□ 0.18
CNOT2-216ENST00000548939 POTEHQ6S545 545 aa16.19■□□□□ 0.18
CNOT2-216ENST00000548939 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
CNOT2-216ENST00000548939 FBLN2P98095 1184 aa16.11■□□□□ 0.17
CNOT2-216ENST00000548939 AKT1S1Q96B36 256 aa16.1■□□□□ 0.17
CNOT2-216ENST00000548939 CHRDL2Q6WN34 429 aa16■□□□□ 0.15
CNOT2-216ENST00000548939 MKRN4PQ13434 485 aaPredicted RBP15.97■□□□□ 0.15
CNOT2-216ENST00000548939 REM2Q8IYK8 340 aaPredicted RBP15.94■□□□□ 0.14
CNOT2-216ENST00000548939 SPDYE2BA6NHP3 402 aa15.92■□□□□ 0.14
CNOT2-216ENST00000548939 SPDYE6P0CI01 402 aa15.92■□□□□ 0.14
CNOT2-216ENST00000548939 SPDYE2Q495Y8 402 aa15.92■□□□□ 0.14
CNOT2-216ENST00000548939 PITPNM1O00562 1244 aa15.77■□□□□ 0.12
CNOT2-216ENST00000548939 ZNF692Q9BU19 519 aaPredicted RBP15.77■□□□□ 0.12
CNOT2-216ENST00000548939 SSUH2Q9Y2M2 353 aa15.71■□□□□ 0.11
CNOT2-216ENST00000548939 PIP4P2Q8N4L2 257 aa15.66■□□□□ 0.1
CNOT2-216ENST00000548939 SPDYE1Q8NFV5 336 aaPredicted RBP15.6■□□□□ 0.09
CNOT2-216ENST00000548939 FXR2P51116 673 aaKnown RBP eCLIP15.58■□□□□ 0.08
CNOT2-216ENST00000548939 CLEC11AQ9Y240 323 aa15.58■□□□□ 0.08
CNOT2-216ENST00000548939 PABPN1Q86U42 306 aaKnown RBP eCLIP15.53■□□□□ 0.08
CNOT2-216ENST00000548939 PRKAR2AP13861 404 aaKnown RBP15.38■□□□□ 0.05
CNOT2-216ENST00000548939 SPDYE4A6NLX3 237 aa15.34■□□□□ 0.05
CNOT2-216ENST00000548939 HAX1O00165 279 aa15.34■□□□□ 0.05
CNOT2-216ENST00000548939 PRR29P0C7W0 189 aa15.34■□□□□ 0.05
CNOT2-216ENST00000548939 SP7Q8TDD2 431 aaPredicted RBP15.27■□□□□ 0.04
CNOT2-216ENST00000548939 CHADLQ6NUI6 762 aa15.24■□□□□ 0.03
CNOT2-216ENST00000548939 STAG3Q9UJ98 1225 aa15.16■□□□□ 0.02
CNOT2-216ENST00000548939 EVX2Q03828 476 aa15.12■□□□□ 0.01
CNOT2-216ENST00000548939 C19orf67A6NJJ6 358 aa15.08■□□□□ 0
CNOT2-216ENST00000548939 FARP1Q9Y4F1 1045 aaPredicted RBP15.03■□□□□ -0
CNOT2-216ENST00000548939 CREBZFQ9NS37 354 aa14.98□□□□□ -0.01
CNOT2-216ENST00000548939 PROM2Q8N271 834 aa14.96□□□□□ -0.01
CNOT2-216ENST00000548939 CD44P16070 742 aaKnown RBP14.9□□□□□ -0.02
CNOT2-216ENST00000548939 GABBR2O75899 941 aa14.82□□□□□ -0.04
CNOT2-216ENST00000548939 FKBP8Q14318 412 aa14.77□□□□□ -0.05
CNOT2-216ENST00000548939 NPM1P06748 294 aaKnown RBP eCLIP14.74□□□□□ -0.05
CNOT2-216ENST00000548939 MNX1P50219 401 aaPredicted RBP14.73□□□□□ -0.05
CNOT2-216ENST00000548939 ZRANB1Q9UGI0 708 aa14.73□□□□□ -0.05
CNOT2-216ENST00000548939 PAK3O75914 559 aaPredicted RBP14.67□□□□□ -0.06
CNOT2-216ENST00000548939 ZNF579Q8NAF0 562 aaKnown RBP14.67□□□□□ -0.06
CNOT2-216ENST00000548939 CLCN6P51797 869 aa14.66□□□□□ -0.06
CNOT2-216ENST00000548939 MIER1Q8N108 512 aa14.63□□□□□ -0.07
CNOT2-216ENST00000548939 PLEKHG5O94827 1062 aa14.62□□□□□ -0.07
CNOT2-216ENST00000548939 PLCD3Q8N3E9 789 aa14.54□□□□□ -0.08
CNOT2-216ENST00000548939 PHF12Q96QT6 1004 aa14.53□□□□□ -0.08
CNOT2-216ENST00000548939 DCBLD2Q96PD2 775 aa14.49□□□□□ -0.09
CNOT2-216ENST00000548939 POTEIP0CG38 1075 aa14.48□□□□□ -0.09
CNOT2-216ENST00000548939 TSPYL2Q9H2G4 693 aaPredicted RBP14.48□□□□□ -0.09
CNOT2-216ENST00000548939 GALR2O43603 387 aaPredicted RBP14.47□□□□□ -0.09
CNOT2-216ENST00000548939 FBXO3Q9UK99 471 aa14.43□□□□□ -0.1
CNOT2-216ENST00000548939 ZBTB47Q9UFB7 747 aaPredicted RBP14.42□□□□□ -0.1
CNOT2-216ENST00000548939 RASEFQ8IZ41 740 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms