RNA–Protein interactions for RNA: ENST00000548771.1

CCDC38-206, Transcript of coiled-coil domain containing 38, humanhuman

TSL 3

Gene CCDC38, Length 470 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-206ENST00000548771 AEBP2Q6ZN18 517 aaPredicted RBP29.72■■■□□ 2.35
CCDC38-206ENST00000548771 CHIC1Q5VXU3 224 aa27.82■■■□□ 2.04
CCDC38-206ENST00000548771 SENP3Q9H4L4 574 aaPredicted RBP25.22■■□□□ 1.63
CCDC38-206ENST00000548771 PHF23Q9BUL5 403 aaPredicted RBP24.95■■□□□ 1.58
CCDC38-206ENST00000548771 FOXD1Q16676 465 aa23.67■■□□□ 1.38
CCDC38-206ENST00000548771 POTEDQ86YR6 584 aa22.21■■□□□ 1.15
CCDC38-206ENST00000548771 MSH5O43196 834 aa22.1■■□□□ 1.13
CCDC38-206ENST00000548771 PLPPR3Q6T4P5 718 aa22.04■■□□□ 1.12
CCDC38-206ENST00000548771 PIAS4Q8N2W9 510 aaPredicted RBP22.01■■□□□ 1.11
CCDC38-206ENST00000548771 PPP6R1Q9UPN7 881 aa21.98■■□□□ 1.11
CCDC38-206ENST00000548771 ADRA2BP18089 450 aa21.88■■□□□ 1.09
CCDC38-206ENST00000548771 MAPK8IP2Q13387 824 aaPredicted RBP20.23■□□□□ 0.83
CCDC38-206ENST00000548771 DMRT2Q9Y5R5 561 aa19.99■□□□□ 0.79
CCDC38-206ENST00000548771 SCAF1Q9H7N4 1312 aaKnown RBP19.79■□□□□ 0.76
CCDC38-206ENST00000548771 PPP4R3CPQ6ZMV5 832 aa19.36■□□□□ 0.69
CCDC38-206ENST00000548771 DCAF8L1A6NGE4 600 aa19.27■□□□□ 0.68
CCDC38-206ENST00000548771 CACNB1Q02641 598 aaPredicted RBP19.24■□□□□ 0.67
CCDC38-206ENST00000548771 HOXD11P31277 338 aaPredicted RBP19.13■□□□□ 0.65
CCDC38-206ENST00000548771 CNKSR2Q8WXI2 1034 aa18.99■□□□□ 0.63
CCDC38-206ENST00000548771 RNF39Q9H2S5 420 aa18.91■□□□□ 0.62
CCDC38-206ENST00000548771 RNF216Q9NWF9 866 aaPredicted RBP18.89■□□□□ 0.61
CCDC38-206ENST00000548771 C1QBPQ07021 282 aaKnown RBP18.55■□□□□ 0.56
CCDC38-206ENST00000548771 NCBP3Q53F19 620 aaKnown RBP18.41■□□□□ 0.54
CCDC38-206ENST00000548771 DNAJC5BQ9UF47 199 aa18.37■□□□□ 0.53
CCDC38-206ENST00000548771 NPM3O75607 178 aaKnown RBP18.28■□□□□ 0.52
CCDC38-206ENST00000548771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.25■□□□□ 0.51
CCDC38-206ENST00000548771 KCNA4P22459 653 aa17.95■□□□□ 0.46
CCDC38-206ENST00000548771 U3KPZ7 1027 aaPredicted RBP17.88■□□□□ 0.45
CCDC38-206ENST00000548771 SPINK5Q9NQ38 1064 aaPredicted RBP17.77■□□□□ 0.44
CCDC38-206ENST00000548771 CAPN15O75808 1086 aa17.68■□□□□ 0.42
CCDC38-206ENST00000548771 DSG3P32926 999 aa17.64■□□□□ 0.41
CCDC38-206ENST00000548771 SLC4A2P04920 1241 aa17.57■□□□□ 0.4
CCDC38-206ENST00000548771 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
CCDC38-206ENST00000548771 ABCB7O75027 752 aa17.32■□□□□ 0.36
CCDC38-206ENST00000548771 POTEHQ6S545 545 aa17.31■□□□□ 0.36
CCDC38-206ENST00000548771 ZNF219Q9P2Y4 722 aaPredicted RBP17.17■□□□□ 0.34
CCDC38-206ENST00000548771 APLP2Q06481 763 aa17.12■□□□□ 0.33
CCDC38-206ENST00000548771 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
CCDC38-206ENST00000548771 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
CCDC38-206ENST00000548771 SAMD1Q6SPF0 538 aaPredicted RBP17.03■□□□□ 0.32
CCDC38-206ENST00000548771 SLC4A1APQ9BWU0 796 aaKnown RBP16.96■□□□□ 0.31
CCDC38-206ENST00000548771 MYCNP04198 464 aaPredicted RBP16.82■□□□□ 0.28
CCDC38-206ENST00000548771 POLA2Q14181 598 aa16.81■□□□□ 0.28
CCDC38-206ENST00000548771 RBM42Q9BTD8 480 aaKnown RBP16.7■□□□□ 0.26
CCDC38-206ENST00000548771 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
CCDC38-206ENST00000548771 FOXD4L1Q9NU39 408 aa16.61■□□□□ 0.25
CCDC38-206ENST00000548771 CHRDL2Q6WN34 429 aa16.56■□□□□ 0.24
CCDC38-206ENST00000548771 ZBTB22O15209 634 aa16.55■□□□□ 0.24
CCDC38-206ENST00000548771 OSCARQ8IYS5 282 aa16.31■□□□□ 0.2
CCDC38-206ENST00000548771 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
CCDC38-206ENST00000548771 ZBTB12Q9Y330 459 aaPredicted RBP16.26■□□□□ 0.19
CCDC38-206ENST00000548771 REM2Q8IYK8 340 aaPredicted RBP16.24■□□□□ 0.19
CCDC38-206ENST00000548771 PIP4P2Q8N4L2 257 aa16.14■□□□□ 0.17
CCDC38-206ENST00000548771 ATXN8OSP0DMR3 200 aa16.12■□□□□ 0.17
CCDC38-206ENST00000548771 CSRNP3Q8WYN3 585 aa16.11■□□□□ 0.17
CCDC38-206ENST00000548771 PITPNM1O00562 1244 aa16.08■□□□□ 0.16
CCDC38-206ENST00000548771 SP7Q8TDD2 431 aaPredicted RBP16.08■□□□□ 0.16
CCDC38-206ENST00000548771 FXR2P51116 673 aaKnown RBP eCLIP15.96■□□□□ 0.15
CCDC38-206ENST00000548771 EHMT2Q96KQ7 1210 aa15.93■□□□□ 0.14
CCDC38-206ENST00000548771 HAX1O00165 279 aa15.92■□□□□ 0.14
CCDC38-206ENST00000548771 FBLN2P98095 1184 aa15.82■□□□□ 0.12
CCDC38-206ENST00000548771 EVX2Q03828 476 aa15.82■□□□□ 0.12
CCDC38-206ENST00000548771 MKRN4PQ13434 485 aaPredicted RBP15.82■□□□□ 0.12
CCDC38-206ENST00000548771 SPDYE2BA6NHP3 402 aa15.8■□□□□ 0.12
CCDC38-206ENST00000548771 SPDYE6P0CI01 402 aa15.8■□□□□ 0.12
CCDC38-206ENST00000548771 SPDYE2Q495Y8 402 aa15.8■□□□□ 0.12
CCDC38-206ENST00000548771 CLEC11AQ9Y240 323 aa15.71■□□□□ 0.11
CCDC38-206ENST00000548771 PRKAR2AP13861 404 aaKnown RBP15.66■□□□□ 0.1
CCDC38-206ENST00000548771 ZNF692Q9BU19 519 aaPredicted RBP15.64■□□□□ 0.09
CCDC38-206ENST00000548771 SPDYE1Q8NFV5 336 aaPredicted RBP15.61■□□□□ 0.09
CCDC38-206ENST00000548771 SSUH2Q9Y2M2 353 aa15.61■□□□□ 0.09
CCDC38-206ENST00000548771 CHADLQ6NUI6 762 aa15.5■□□□□ 0.07
CCDC38-206ENST00000548771 C19orf67A6NJJ6 358 aa15.46■□□□□ 0.07
CCDC38-206ENST00000548771 PABPN1Q86U42 306 aaKnown RBP eCLIP15.44■□□□□ 0.06
CCDC38-206ENST00000548771 PRR29P0C7W0 189 aa15.35■□□□□ 0.05
CCDC38-206ENST00000548771 GABBR2O75899 941 aa15.34■□□□□ 0.05
CCDC38-206ENST00000548771 FARP1Q9Y4F1 1045 aaPredicted RBP15.15■□□□□ 0.02
CCDC38-206ENST00000548771 CD44P16070 742 aaKnown RBP15.13■□□□□ 0.01
CCDC38-206ENST00000548771 LHX8Q68G74 356 aa15.1■□□□□ 0.01
CCDC38-206ENST00000548771 POTEIP0CG38 1075 aa15.08■□□□□ 0
CCDC38-206ENST00000548771 CREBZFQ9NS37 354 aa14.95□□□□□ -0.02
CCDC38-206ENST00000548771 ZRANB1Q9UGI0 708 aa14.89□□□□□ -0.03
CCDC38-206ENST00000548771 SPDYE4A6NLX3 237 aa14.88□□□□□ -0.03
CCDC38-206ENST00000548771 ZNF579Q8NAF0 562 aaKnown RBP14.84□□□□□ -0.03
CCDC38-206ENST00000548771 DCBLD2Q96PD2 775 aa14.82□□□□□ -0.04
CCDC38-206ENST00000548771 STAG3Q9UJ98 1225 aa14.8□□□□□ -0.04
CCDC38-206ENST00000548771 GALR2O43603 387 aaPredicted RBP14.79□□□□□ -0.04
CCDC38-206ENST00000548771 CLCN6P51797 869 aa14.76□□□□□ -0.05
CCDC38-206ENST00000548771 PROM2Q8N271 834 aa14.72□□□□□ -0.05
CCDC38-206ENST00000548771 PHF12Q96QT6 1004 aa14.72□□□□□ -0.05
CCDC38-206ENST00000548771 MNX1P50219 401 aaPredicted RBP14.66□□□□□ -0.06
CCDC38-206ENST00000548771 POTEB2H3BUK9 544 aa14.6□□□□□ -0.07
CCDC38-206ENST00000548771 PAK3O75914 559 aaPredicted RBP14.59□□□□□ -0.07
CCDC38-206ENST00000548771 PELP1Q8IZL8 1130 aaKnown RBP14.56□□□□□ -0.08
CCDC38-206ENST00000548771 NPM1P06748 294 aaKnown RBP eCLIP14.55□□□□□ -0.08
CCDC38-206ENST00000548771 OTUD5Q96G74 571 aa14.54□□□□□ -0.08
CCDC38-206ENST00000548771 FKBP8Q14318 412 aa14.48□□□□□ -0.09
CCDC38-206ENST00000548771 MS4A3Q96HJ5 214 aa14.48□□□□□ -0.09
CCDC38-206ENST00000548771 TSPYL2Q9H2G4 693 aaPredicted RBP14.42□□□□□ -0.1
CCDC38-206ENST00000548771 PLSCR2Q9NRY7 297 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms