RNA–Protein interactions for RNA: ENST00000548313.5

DEPDC4-205, Transcript of DEP domain containing 4, humanhuman

TSL 3

Gene DEPDC4, Length 389 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-205ENST00000548313 AEBP2Q6ZN18 517 aaPredicted RBP25.21■■□□□ 1.63
DEPDC4-205ENST00000548313 CHIC1Q5VXU3 224 aa23.8■■□□□ 1.4
DEPDC4-205ENST00000548313 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
DEPDC4-205ENST00000548313 PHF23Q9BUL5 403 aaPredicted RBP21.3■■□□□ 1
DEPDC4-205ENST00000548313 FOXD1Q16676 465 aa20.14■□□□□ 0.81
DEPDC4-205ENST00000548313 MSH5O43196 834 aa19.01■□□□□ 0.63
DEPDC4-205ENST00000548313 PLPPR3Q6T4P5 718 aa18.96■□□□□ 0.63
DEPDC4-205ENST00000548313 POTEDQ86YR6 584 aa18.85■□□□□ 0.61
DEPDC4-205ENST00000548313 PIAS4Q8N2W9 510 aaPredicted RBP18.8■□□□□ 0.6
DEPDC4-205ENST00000548313 PPP6R1Q9UPN7 881 aa18.63■□□□□ 0.57
DEPDC4-205ENST00000548313 ADRA2BP18089 450 aa18.58■□□□□ 0.56
DEPDC4-205ENST00000548313 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
DEPDC4-205ENST00000548313 MAPK8IP2Q13387 824 aaPredicted RBP17.11■□□□□ 0.33
DEPDC4-205ENST00000548313 DMRT2Q9Y5R5 561 aa17.11■□□□□ 0.33
DEPDC4-205ENST00000548313 PPP4R3CPQ6ZMV5 832 aa16.56■□□□□ 0.24
DEPDC4-205ENST00000548313 DCAF8L1A6NGE4 600 aa16.43■□□□□ 0.22
DEPDC4-205ENST00000548313 CACNB1Q02641 598 aaPredicted RBP16.42■□□□□ 0.22
DEPDC4-205ENST00000548313 HOXD11P31277 338 aaPredicted RBP16.4■□□□□ 0.22
DEPDC4-205ENST00000548313 CNKSR2Q8WXI2 1034 aa16.33■□□□□ 0.2
DEPDC4-205ENST00000548313 RNF216Q9NWF9 866 aaPredicted RBP16.24■□□□□ 0.19
DEPDC4-205ENST00000548313 RNF39Q9H2S5 420 aa16.16■□□□□ 0.18
DEPDC4-205ENST00000548313 C1QBPQ07021 282 aaKnown RBP15.96■□□□□ 0.15
DEPDC4-205ENST00000548313 NCBP3Q53F19 620 aaKnown RBP15.93■□□□□ 0.14
DEPDC4-205ENST00000548313 DNAJC5BQ9UF47 199 aa15.93■□□□□ 0.14
DEPDC4-205ENST00000548313 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.09
DEPDC4-205ENST00000548313 NPM3O75607 178 aaKnown RBP15.61■□□□□ 0.09
DEPDC4-205ENST00000548313 U3KPZ7 1027 aaPredicted RBP15.24■□□□□ 0.03
DEPDC4-205ENST00000548313 CAPN15O75808 1086 aa15.11■□□□□ 0.01
DEPDC4-205ENST00000548313 KCNA4P22459 653 aa15.09■□□□□ 0.01
DEPDC4-205ENST00000548313 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
DEPDC4-205ENST00000548313 DSG3P32926 999 aa15.05■□□□□ -0
DEPDC4-205ENST00000548313 SLC4A2P04920 1241 aa14.94□□□□□ -0.02
DEPDC4-205ENST00000548313 APLP2Q06481 763 aa14.93□□□□□ -0.02
DEPDC4-205ENST00000548313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.84□□□□□ -0.03
DEPDC4-205ENST00000548313 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
DEPDC4-205ENST00000548313 ZNF219Q9P2Y4 722 aaPredicted RBP14.81□□□□□ -0.04
DEPDC4-205ENST00000548313 TRHP20396 242 aaPredicted RBP14.8□□□□□ -0.04
DEPDC4-205ENST00000548313 POTEHQ6S545 545 aa14.75□□□□□ -0.05
DEPDC4-205ENST00000548313 SAMD1Q6SPF0 538 aaPredicted RBP14.72□□□□□ -0.05
DEPDC4-205ENST00000548313 ABCB7O75027 752 aa14.69□□□□□ -0.06
DEPDC4-205ENST00000548313 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
DEPDC4-205ENST00000548313 RBM42Q9BTD8 480 aaKnown RBP14.44□□□□□ -0.1
DEPDC4-205ENST00000548313 SLC4A1APQ9BWU0 796 aaKnown RBP14.38□□□□□ -0.11
DEPDC4-205ENST00000548313 POLA2Q14181 598 aa14.36□□□□□ -0.11
DEPDC4-205ENST00000548313 FOXD4L1Q9NU39 408 aa14.2□□□□□ -0.14
DEPDC4-205ENST00000548313 CHRDL2Q6WN34 429 aa14.16□□□□□ -0.14
DEPDC4-205ENST00000548313 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
DEPDC4-205ENST00000548313 ATF5Q9Y2D1 282 aaPredicted RBP14.08□□□□□ -0.16
DEPDC4-205ENST00000548313 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
DEPDC4-205ENST00000548313 EHMT2Q96KQ7 1210 aa14.04□□□□□ -0.16
DEPDC4-205ENST00000548313 REM2Q8IYK8 340 aaPredicted RBP13.88□□□□□ -0.19
DEPDC4-205ENST00000548313 OSCARQ8IYS5 282 aa13.88□□□□□ -0.19
DEPDC4-205ENST00000548313 CSRNP3Q8WYN3 585 aa13.88□□□□□ -0.19
DEPDC4-205ENST00000548313 ATXN8OSP0DMR3 200 aa13.84□□□□□ -0.19
DEPDC4-205ENST00000548313 ZBTB22O15209 634 aa13.82□□□□□ -0.2
DEPDC4-205ENST00000548313 PIP4P2Q8N4L2 257 aa13.76□□□□□ -0.21
DEPDC4-205ENST00000548313 SP7Q8TDD2 431 aaPredicted RBP13.73□□□□□ -0.21
DEPDC4-205ENST00000548313 PITPNM1O00562 1244 aa13.71□□□□□ -0.21
DEPDC4-205ENST00000548313 FBLN2P98095 1184 aa13.68□□□□□ -0.22
DEPDC4-205ENST00000548313 FXR2P51116 673 aaKnown RBP eCLIP13.65□□□□□ -0.22
DEPDC4-205ENST00000548313 SPDYE2BA6NHP3 402 aa13.63□□□□□ -0.23
DEPDC4-205ENST00000548313 SPDYE6P0CI01 402 aa13.63□□□□□ -0.23
DEPDC4-205ENST00000548313 SPDYE2Q495Y8 402 aa13.63□□□□□ -0.23
DEPDC4-205ENST00000548313 HAX1O00165 279 aa13.6□□□□□ -0.23
DEPDC4-205ENST00000548313 SPDYE1Q8NFV5 336 aaPredicted RBP13.46□□□□□ -0.25
DEPDC4-205ENST00000548313 MKRN4PQ13434 485 aaPredicted RBP13.43□□□□□ -0.26
DEPDC4-205ENST00000548313 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
DEPDC4-205ENST00000548313 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
DEPDC4-205ENST00000548313 SSUH2Q9Y2M2 353 aa13.38□□□□□ -0.27
DEPDC4-205ENST00000548313 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
DEPDC4-205ENST00000548313 EVX2Q03828 476 aa13.33□□□□□ -0.28
DEPDC4-205ENST00000548313 C19orf67A6NJJ6 358 aa13.23□□□□□ -0.29
DEPDC4-205ENST00000548313 PABPN1Q86U42 306 aaKnown RBP eCLIP13.2□□□□□ -0.3
DEPDC4-205ENST00000548313 PRR29P0C7W0 189 aa13.19□□□□□ -0.3
DEPDC4-205ENST00000548313 CHADLQ6NUI6 762 aa13.13□□□□□ -0.31
DEPDC4-205ENST00000548313 GABBR2O75899 941 aa13.07□□□□□ -0.32
DEPDC4-205ENST00000548313 FARP1Q9Y4F1 1045 aaPredicted RBP12.97□□□□□ -0.33
DEPDC4-205ENST00000548313 CD44P16070 742 aaKnown RBP12.94□□□□□ -0.34
DEPDC4-205ENST00000548313 CLCN6P51797 869 aa12.91□□□□□ -0.34
DEPDC4-205ENST00000548313 LHX8Q68G74 356 aa12.89□□□□□ -0.35
DEPDC4-205ENST00000548313 STAG3Q9UJ98 1225 aa12.86□□□□□ -0.35
DEPDC4-205ENST00000548313 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
DEPDC4-205ENST00000548313 POTEIP0CG38 1075 aa12.75□□□□□ -0.37
DEPDC4-205ENST00000548313 CREBZFQ9NS37 354 aa12.75□□□□□ -0.37
DEPDC4-205ENST00000548313 ZNF579Q8NAF0 562 aaKnown RBP12.73□□□□□ -0.37
DEPDC4-205ENST00000548313 ZRANB1Q9UGI0 708 aa12.73□□□□□ -0.37
DEPDC4-205ENST00000548313 DCBLD2Q96PD2 775 aa12.72□□□□□ -0.37
DEPDC4-205ENST00000548313 PAK3O75914 559 aaPredicted RBP12.64□□□□□ -0.39
DEPDC4-205ENST00000548313 NPM1P06748 294 aaKnown RBP eCLIP12.6□□□□□ -0.39
DEPDC4-205ENST00000548313 GALR2O43603 387 aaPredicted RBP12.56□□□□□ -0.4
DEPDC4-205ENST00000548313 FKBP8Q14318 412 aa12.53□□□□□ -0.4
DEPDC4-205ENST00000548313 MNX1P50219 401 aaPredicted RBP12.49□□□□□ -0.41
DEPDC4-205ENST00000548313 PHF12Q96QT6 1004 aa12.49□□□□□ -0.41
DEPDC4-205ENST00000548313 PROM2Q8N271 834 aa12.39□□□□□ -0.43
DEPDC4-205ENST00000548313 OTUD5Q96G74 571 aa12.35□□□□□ -0.43
DEPDC4-205ENST00000548313 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
DEPDC4-205ENST00000548313 ASTLQ6HA08 431 aaPredicted RBP12.32□□□□□ -0.44
DEPDC4-205ENST00000548313 PELP1Q8IZL8 1130 aaKnown RBP12.32□□□□□ -0.44
DEPDC4-205ENST00000548313 MS4A3Q96HJ5 214 aa12.32□□□□□ -0.44
DEPDC4-205ENST00000548313 TSPYL2Q9H2G4 693 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms