RNA–Protein interactions for RNA: ENST00000548296.1

RPAP3-206, Transcript of RNA polymerase II associated protein 3, humanhuman

TSL 3

Gene RPAP3, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3-206ENST00000548296 AEBP2Q6ZN18 517 aaPredicted RBP24.97■■□□□ 1.59
RPAP3-206ENST00000548296 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
RPAP3-206ENST00000548296 SENP3Q9H4L4 574 aaPredicted RBP21.42■■□□□ 1.02
RPAP3-206ENST00000548296 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
RPAP3-206ENST00000548296 FOXD1Q16676 465 aa19.85■□□□□ 0.77
RPAP3-206ENST00000548296 PLPPR3Q6T4P5 718 aa19.29■□□□□ 0.68
RPAP3-206ENST00000548296 PPP6R1Q9UPN7 881 aa18.66■□□□□ 0.58
RPAP3-206ENST00000548296 MSH5O43196 834 aa18.63■□□□□ 0.57
RPAP3-206ENST00000548296 PIAS4Q8N2W9 510 aaPredicted RBP18.63■□□□□ 0.57
RPAP3-206ENST00000548296 ADRA2BP18089 450 aa18.62■□□□□ 0.57
RPAP3-206ENST00000548296 POTEDQ86YR6 584 aa17.87■□□□□ 0.45
RPAP3-206ENST00000548296 SCAF1Q9H7N4 1312 aaKnown RBP17.21■□□□□ 0.35
RPAP3-206ENST00000548296 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
RPAP3-206ENST00000548296 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
RPAP3-206ENST00000548296 PPP4R3CPQ6ZMV5 832 aa16.88■□□□□ 0.29
RPAP3-206ENST00000548296 CNKSR2Q8WXI2 1034 aa16.57■□□□□ 0.24
RPAP3-206ENST00000548296 HOXD11P31277 338 aaPredicted RBP16.42■□□□□ 0.22
RPAP3-206ENST00000548296 NCBP3Q53F19 620 aaKnown RBP16.39■□□□□ 0.21
RPAP3-206ENST00000548296 RNF216Q9NWF9 866 aaPredicted RBP16.38■□□□□ 0.21
RPAP3-206ENST00000548296 DCAF8L1A6NGE4 600 aa16.27■□□□□ 0.2
RPAP3-206ENST00000548296 NPM3O75607 178 aaKnown RBP16.02■□□□□ 0.16
RPAP3-206ENST00000548296 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
RPAP3-206ENST00000548296 RNF39Q9H2S5 420 aa15.85■□□□□ 0.13
RPAP3-206ENST00000548296 KCNA4P22459 653 aa15.84■□□□□ 0.13
RPAP3-206ENST00000548296 CACNB1Q02641 598 aaPredicted RBP15.84■□□□□ 0.13
RPAP3-206ENST00000548296 C1QBPQ07021 282 aaKnown RBP15.69■□□□□ 0.1
RPAP3-206ENST00000548296 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.68■□□□□ 0.1
RPAP3-206ENST00000548296 U3KPZ7 1027 aaPredicted RBP15.28■□□□□ 0.04
RPAP3-206ENST00000548296 SLC4A2P04920 1241 aa15.23■□□□□ 0.03
RPAP3-206ENST00000548296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.08■□□□□ 0
RPAP3-206ENST00000548296 HNRNPUL2Q1KMD3 747 aaKnown RBP15.08■□□□□ 0
RPAP3-206ENST00000548296 APLP2Q06481 763 aa15.07■□□□□ 0
RPAP3-206ENST00000548296 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
RPAP3-206ENST00000548296 CAPN15O75808 1086 aa15.04■□□□□ -0
RPAP3-206ENST00000548296 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
RPAP3-206ENST00000548296 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
RPAP3-206ENST00000548296 MYCNP04198 464 aaPredicted RBP14.88□□□□□ -0.03
RPAP3-206ENST00000548296 DSG3P32926 999 aa14.88□□□□□ -0.03
RPAP3-206ENST00000548296 ZNF219Q9P2Y4 722 aaPredicted RBP14.87□□□□□ -0.03
RPAP3-206ENST00000548296 TRHP20396 242 aaPredicted RBP14.82□□□□□ -0.04
RPAP3-206ENST00000548296 FOXD4L1Q9NU39 408 aa14.79□□□□□ -0.04
RPAP3-206ENST00000548296 ABCB7O75027 752 aa14.64□□□□□ -0.07
RPAP3-206ENST00000548296 ZBTB22O15209 634 aa14.51□□□□□ -0.09
RPAP3-206ENST00000548296 POLA2Q14181 598 aa14.48□□□□□ -0.09
RPAP3-206ENST00000548296 ATXN8OSP0DMR3 200 aa14.4□□□□□ -0.1
RPAP3-206ENST00000548296 ATF5Q9Y2D1 282 aaPredicted RBP14.4□□□□□ -0.1
RPAP3-206ENST00000548296 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
RPAP3-206ENST00000548296 ZBTB12Q9Y330 459 aaPredicted RBP14.3□□□□□ -0.12
RPAP3-206ENST00000548296 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
RPAP3-206ENST00000548296 POTEHQ6S545 545 aa14.01□□□□□ -0.17
RPAP3-206ENST00000548296 FBLN2P98095 1184 aa13.99□□□□□ -0.17
RPAP3-206ENST00000548296 AKT1S1Q96B36 256 aa13.97□□□□□ -0.17
RPAP3-206ENST00000548296 OSCARQ8IYS5 282 aa13.96□□□□□ -0.17
RPAP3-206ENST00000548296 EHMT2Q96KQ7 1210 aa13.96□□□□□ -0.17
RPAP3-206ENST00000548296 CHRDL2Q6WN34 429 aa13.84□□□□□ -0.19
RPAP3-206ENST00000548296 SPDYE2BA6NHP3 402 aa13.81□□□□□ -0.2
RPAP3-206ENST00000548296 SPDYE6P0CI01 402 aa13.81□□□□□ -0.2
RPAP3-206ENST00000548296 SPDYE2Q495Y8 402 aa13.81□□□□□ -0.2
RPAP3-206ENST00000548296 REM2Q8IYK8 340 aaPredicted RBP13.8□□□□□ -0.2
RPAP3-206ENST00000548296 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
RPAP3-206ENST00000548296 ZNF692Q9BU19 519 aaPredicted RBP13.67□□□□□ -0.22
RPAP3-206ENST00000548296 PITPNM1O00562 1244 aa13.62□□□□□ -0.23
RPAP3-206ENST00000548296 SSUH2Q9Y2M2 353 aa13.6□□□□□ -0.23
RPAP3-206ENST00000548296 SPDYE1Q8NFV5 336 aaPredicted RBP13.54□□□□□ -0.24
RPAP3-206ENST00000548296 PIP4P2Q8N4L2 257 aa13.52□□□□□ -0.25
RPAP3-206ENST00000548296 FXR2P51116 673 aaKnown RBP eCLIP13.5□□□□□ -0.25
RPAP3-206ENST00000548296 CLEC11AQ9Y240 323 aa13.46□□□□□ -0.25
RPAP3-206ENST00000548296 PABPN1Q86U42 306 aaKnown RBP eCLIP13.44□□□□□ -0.26
RPAP3-206ENST00000548296 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
RPAP3-206ENST00000548296 PRKAR2AP13861 404 aaKnown RBP13.3□□□□□ -0.28
RPAP3-206ENST00000548296 SPDYE4A6NLX3 237 aa13.28□□□□□ -0.28
RPAP3-206ENST00000548296 HAX1O00165 279 aa13.28□□□□□ -0.28
RPAP3-206ENST00000548296 SP7Q8TDD2 431 aaPredicted RBP13.22□□□□□ -0.29
RPAP3-206ENST00000548296 STAG3Q9UJ98 1225 aa13.21□□□□□ -0.29
RPAP3-206ENST00000548296 CHADLQ6NUI6 762 aa13.12□□□□□ -0.31
RPAP3-206ENST00000548296 C19orf67A6NJJ6 358 aa13.05□□□□□ -0.32
RPAP3-206ENST00000548296 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.33
RPAP3-206ENST00000548296 EVX2Q03828 476 aa13.01□□□□□ -0.33
RPAP3-206ENST00000548296 PROM2Q8N271 834 aa12.97□□□□□ -0.33
RPAP3-206ENST00000548296 CREBZFQ9NS37 354 aa12.95□□□□□ -0.34
RPAP3-206ENST00000548296 CD44P16070 742 aaKnown RBP12.88□□□□□ -0.35
RPAP3-206ENST00000548296 NPM1P06748 294 aaKnown RBP eCLIP12.83□□□□□ -0.36
RPAP3-206ENST00000548296 CLCN6P51797 869 aa12.83□□□□□ -0.36
RPAP3-206ENST00000548296 GABBR2O75899 941 aa12.81□□□□□ -0.36
RPAP3-206ENST00000548296 FKBP8Q14318 412 aa12.76□□□□□ -0.37
RPAP3-206ENST00000548296 PAK3O75914 559 aaPredicted RBP12.75□□□□□ -0.37
RPAP3-206ENST00000548296 PLEKHG5O94827 1062 aa12.75□□□□□ -0.37
RPAP3-206ENST00000548296 ZRANB1Q9UGI0 708 aa12.74□□□□□ -0.37
RPAP3-206ENST00000548296 MNX1P50219 401 aaPredicted RBP12.73□□□□□ -0.37
RPAP3-206ENST00000548296 ZNF579Q8NAF0 562 aaKnown RBP12.71□□□□□ -0.37
RPAP3-206ENST00000548296 MIER1Q8N108 512 aa12.69□□□□□ -0.38
RPAP3-206ENST00000548296 PLCD3Q8N3E9 789 aa12.6□□□□□ -0.39
RPAP3-206ENST00000548296 ZBTB47Q9UFB7 747 aaPredicted RBP12.58□□□□□ -0.4
RPAP3-206ENST00000548296 FBXO3Q9UK99 471 aa12.57□□□□□ -0.4
RPAP3-206ENST00000548296 DCBLD2Q96PD2 775 aa12.56□□□□□ -0.4
RPAP3-206ENST00000548296 PHF12Q96QT6 1004 aa12.51□□□□□ -0.41
RPAP3-206ENST00000548296 TSPYL2Q9H2G4 693 aaPredicted RBP12.5□□□□□ -0.41
RPAP3-206ENST00000548296 GALR2O43603 387 aaPredicted RBP12.48□□□□□ -0.41
RPAP3-206ENST00000548296 POTEIP0CG38 1075 aa12.48□□□□□ -0.41
RPAP3-206ENST00000548296 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms