RNA–Protein interactions for RNA: ENST00000546816.5

CCDC38-204, Transcript of coiled-coil domain containing 38, humanhuman

TSL 2

Gene CCDC38, Length 465 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-204ENST00000546816 AEBP2Q6ZN18 517 aaPredicted RBP31.84■■■□□ 2.69
CCDC38-204ENST00000546816 CHIC1Q5VXU3 224 aa30.27■■■□□ 2.44
CCDC38-204ENST00000546816 SENP3Q9H4L4 574 aaPredicted RBP27.1■■□□□ 1.93
CCDC38-204ENST00000546816 PHF23Q9BUL5 403 aaPredicted RBP26.78■■□□□ 1.88
CCDC38-204ENST00000546816 FOXD1Q16676 465 aa25.29■■□□□ 1.64
CCDC38-204ENST00000546816 PLPPR3Q6T4P5 718 aa24.18■■□□□ 1.46
CCDC38-204ENST00000546816 PPP6R1Q9UPN7 881 aa23.7■■□□□ 1.38
CCDC38-204ENST00000546816 MSH5O43196 834 aa23.61■■□□□ 1.37
CCDC38-204ENST00000546816 ADRA2BP18089 450 aa23.6■■□□□ 1.37
CCDC38-204ENST00000546816 PIAS4Q8N2W9 510 aaPredicted RBP23.6■■□□□ 1.37
CCDC38-204ENST00000546816 POTEDQ86YR6 584 aa22.98■■□□□ 1.27
CCDC38-204ENST00000546816 MAPK8IP2Q13387 824 aaPredicted RBP21.67■■□□□ 1.06
CCDC38-204ENST00000546816 SCAF1Q9H7N4 1312 aaKnown RBP21.55■■□□□ 1.04
CCDC38-204ENST00000546816 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
CCDC38-204ENST00000546816 PPP4R3CPQ6ZMV5 832 aa21.21■□□□□ 0.99
CCDC38-204ENST00000546816 CNKSR2Q8WXI2 1034 aa20.8■□□□□ 0.92
CCDC38-204ENST00000546816 HOXD11P31277 338 aaPredicted RBP20.77■□□□□ 0.92
CCDC38-204ENST00000546816 RNF216Q9NWF9 866 aaPredicted RBP20.61■□□□□ 0.89
CCDC38-204ENST00000546816 DCAF8L1A6NGE4 600 aa20.55■□□□□ 0.88
CCDC38-204ENST00000546816 NCBP3Q53F19 620 aaKnown RBP20.38■□□□□ 0.85
CCDC38-204ENST00000546816 CACNB1Q02641 598 aaPredicted RBP20.21■□□□□ 0.83
CCDC38-204ENST00000546816 RNF39Q9H2S5 420 aa20.18■□□□□ 0.82
CCDC38-204ENST00000546816 NPM3O75607 178 aaKnown RBP20.13■□□□□ 0.81
CCDC38-204ENST00000546816 DNAJC5BQ9UF47 199 aa20.06■□□□□ 0.8
CCDC38-204ENST00000546816 C1QBPQ07021 282 aaKnown RBP19.87■□□□□ 0.77
CCDC38-204ENST00000546816 KCNA4P22459 653 aa19.78■□□□□ 0.76
CCDC38-204ENST00000546816 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.72■□□□□ 0.75
CCDC38-204ENST00000546816 U3KPZ7 1027 aaPredicted RBP19.36■□□□□ 0.69
CCDC38-204ENST00000546816 SLC4A2P04920 1241 aa19.23■□□□□ 0.67
CCDC38-204ENST00000546816 SPINK5Q9NQ38 1064 aaPredicted RBP19.06■□□□□ 0.64
CCDC38-204ENST00000546816 CAPN15O75808 1086 aa18.98■□□□□ 0.63
CCDC38-204ENST00000546816 DSG3P32926 999 aa18.92■□□□□ 0.62
CCDC38-204ENST00000546816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
CCDC38-204ENST00000546816 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
CCDC38-204ENST00000546816 APLP2Q06481 763 aa18.77■□□□□ 0.6
CCDC38-204ENST00000546816 SAMD1Q6SPF0 538 aaPredicted RBP18.69■□□□□ 0.58
CCDC38-204ENST00000546816 TRHP20396 242 aaPredicted RBP18.68■□□□□ 0.58
CCDC38-204ENST00000546816 ZNF219Q9P2Y4 722 aaPredicted RBP18.67■□□□□ 0.58
CCDC38-204ENST00000546816 SLC4A1APQ9BWU0 796 aaKnown RBP18.66■□□□□ 0.58
CCDC38-204ENST00000546816 MYCNP04198 464 aaPredicted RBP18.59■□□□□ 0.57
CCDC38-204ENST00000546816 ABCB7O75027 752 aa18.55■□□□□ 0.56
CCDC38-204ENST00000546816 FOXD4L1Q9NU39 408 aa18.43■□□□□ 0.54
CCDC38-204ENST00000546816 POLA2Q14181 598 aa18.22■□□□□ 0.51
CCDC38-204ENST00000546816 ZBTB22O15209 634 aa18.21■□□□□ 0.51
CCDC38-204ENST00000546816 ATF5Q9Y2D1 282 aaPredicted RBP18.2■□□□□ 0.5
CCDC38-204ENST00000546816 POTEHQ6S545 545 aa18.01■□□□□ 0.47
CCDC38-204ENST00000546816 RBM42Q9BTD8 480 aaKnown RBP18■□□□□ 0.47
CCDC38-204ENST00000546816 ATXN8OSP0DMR3 200 aa17.88■□□□□ 0.45
CCDC38-204ENST00000546816 ZBTB12Q9Y330 459 aaPredicted RBP17.85■□□□□ 0.45
CCDC38-204ENST00000546816 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
CCDC38-204ENST00000546816 AKT1S1Q96B36 256 aa17.63■□□□□ 0.41
CCDC38-204ENST00000546816 CHRDL2Q6WN34 429 aa17.6■□□□□ 0.41
CCDC38-204ENST00000546816 REM2Q8IYK8 340 aaPredicted RBP17.47■□□□□ 0.39
CCDC38-204ENST00000546816 FBLN2P98095 1184 aa17.42■□□□□ 0.38
CCDC38-204ENST00000546816 CSRNP3Q8WYN3 585 aa17.42■□□□□ 0.38
CCDC38-204ENST00000546816 MKRN4PQ13434 485 aaPredicted RBP17.37■□□□□ 0.37
CCDC38-204ENST00000546816 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
CCDC38-204ENST00000546816 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
CCDC38-204ENST00000546816 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
CCDC38-204ENST00000546816 PITPNM1O00562 1244 aa17.27■□□□□ 0.36
CCDC38-204ENST00000546816 PIP4P2Q8N4L2 257 aa17.22■□□□□ 0.35
CCDC38-204ENST00000546816 FXR2P51116 673 aaKnown RBP eCLIP17.14■□□□□ 0.33
CCDC38-204ENST00000546816 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
CCDC38-204ENST00000546816 SSUH2Q9Y2M2 353 aa17.13■□□□□ 0.33
CCDC38-204ENST00000546816 ZNF692Q9BU19 519 aaPredicted RBP17.1■□□□□ 0.33
CCDC38-204ENST00000546816 SPDYE1Q8NFV5 336 aaPredicted RBP16.99■□□□□ 0.31
CCDC38-204ENST00000546816 CLEC11AQ9Y240 323 aa16.93■□□□□ 0.3
CCDC38-204ENST00000546816 SP7Q8TDD2 431 aaPredicted RBP16.91■□□□□ 0.3
CCDC38-204ENST00000546816 PABPN1Q86U42 306 aaKnown RBP eCLIP16.86■□□□□ 0.29
CCDC38-204ENST00000546816 HAX1O00165 279 aa16.84■□□□□ 0.29
CCDC38-204ENST00000546816 PRKAR2AP13861 404 aaKnown RBP16.81■□□□□ 0.28
CCDC38-204ENST00000546816 EVX2Q03828 476 aa16.71■□□□□ 0.27
CCDC38-204ENST00000546816 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
CCDC38-204ENST00000546816 CHADLQ6NUI6 762 aa16.64■□□□□ 0.25
CCDC38-204ENST00000546816 C19orf67A6NJJ6 358 aa16.58■□□□□ 0.24
CCDC38-204ENST00000546816 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
CCDC38-204ENST00000546816 FARP1Q9Y4F1 1045 aaPredicted RBP16.41■□□□□ 0.22
CCDC38-204ENST00000546816 STAG3Q9UJ98 1225 aa16.4■□□□□ 0.22
CCDC38-204ENST00000546816 CREBZFQ9NS37 354 aa16.32■□□□□ 0.2
CCDC38-204ENST00000546816 GABBR2O75899 941 aa16.31■□□□□ 0.2
CCDC38-204ENST00000546816 CD44P16070 742 aaKnown RBP16.28■□□□□ 0.2
CCDC38-204ENST00000546816 PROM2Q8N271 834 aa16.21■□□□□ 0.19
CCDC38-204ENST00000546816 MNX1P50219 401 aaPredicted RBP16.08■□□□□ 0.16
CCDC38-204ENST00000546816 CLCN6P51797 869 aa16.07■□□□□ 0.16
CCDC38-204ENST00000546816 ZNF579Q8NAF0 562 aaKnown RBP16.06■□□□□ 0.16
CCDC38-204ENST00000546816 ZRANB1Q9UGI0 708 aa16.06■□□□□ 0.16
CCDC38-204ENST00000546816 POTEIP0CG38 1075 aa16■□□□□ 0.15
CCDC38-204ENST00000546816 NPM1P06748 294 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC38-204ENST00000546816 PAK3O75914 559 aaPredicted RBP15.9■□□□□ 0.14
CCDC38-204ENST00000546816 GALR2O43603 387 aaPredicted RBP15.86■□□□□ 0.13
CCDC38-204ENST00000546816 LHX8Q68G74 356 aa15.85■□□□□ 0.13
CCDC38-204ENST00000546816 PHF12Q96QT6 1004 aa15.84■□□□□ 0.13
CCDC38-204ENST00000546816 DCBLD2Q96PD2 775 aa15.83■□□□□ 0.12
CCDC38-204ENST00000546816 FKBP8Q14318 412 aa15.75■□□□□ 0.11
CCDC38-204ENST00000546816 MIER1Q8N108 512 aa15.74■□□□□ 0.11
CCDC38-204ENST00000546816 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
CCDC38-204ENST00000546816 TSPYL2Q9H2G4 693 aaPredicted RBP15.69■□□□□ 0.1
CCDC38-204ENST00000546816 CCDC61Q9Y6R9 512 aa15.66■□□□□ 0.1
CCDC38-204ENST00000546816 MS4A3Q96HJ5 214 aa15.64■□□□□ 0.09
CCDC38-204ENST00000546816 PLCD3Q8N3E9 789 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms