RNA–Protein interactions for RNA: ENST00000544675.1

NDUFA9-208, Transcript of NADH:ubiquinone oxidoreductase subunit A9, humanhuman

TSL 4

Gene NDUFA9, Length 857 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDUFA9-208ENST00000544675 AEBP2Q6ZN18 517 aaPredicted RBP27.47■■□□□ 1.99
NDUFA9-208ENST00000544675 CHIC1Q5VXU3 224 aa26.65■■□□□ 1.86
NDUFA9-208ENST00000544675 SENP3Q9H4L4 574 aaPredicted RBP23.44■■□□□ 1.34
NDUFA9-208ENST00000544675 PHF23Q9BUL5 403 aaPredicted RBP23.35■■□□□ 1.33
NDUFA9-208ENST00000544675 FOXD1Q16676 465 aa21.72■■□□□ 1.07
NDUFA9-208ENST00000544675 PLPPR3Q6T4P5 718 aa21.53■■□□□ 1.04
NDUFA9-208ENST00000544675 PPP6R1Q9UPN7 881 aa20.66■□□□□ 0.9
NDUFA9-208ENST00000544675 ADRA2BP18089 450 aa20.59■□□□□ 0.89
NDUFA9-208ENST00000544675 PIAS4Q8N2W9 510 aaPredicted RBP20.39■□□□□ 0.85
NDUFA9-208ENST00000544675 MSH5O43196 834 aa20.21■□□□□ 0.83
NDUFA9-208ENST00000544675 SCAF1Q9H7N4 1312 aaKnown RBP18.99■□□□□ 0.63
NDUFA9-208ENST00000544675 PPP4R3CPQ6ZMV5 832 aa18.89■□□□□ 0.61
NDUFA9-208ENST00000544675 POTEDQ86YR6 584 aa18.79■□□□□ 0.6
NDUFA9-208ENST00000544675 MAPK8IP2Q13387 824 aaPredicted RBP18.75■□□□□ 0.59
NDUFA9-208ENST00000544675 DMRT2Q9Y5R5 561 aa18.66■□□□□ 0.58
NDUFA9-208ENST00000544675 CNKSR2Q8WXI2 1034 aa18.47■□□□□ 0.55
NDUFA9-208ENST00000544675 NCBP3Q53F19 620 aaKnown RBP18.37■□□□□ 0.53
NDUFA9-208ENST00000544675 HOXD11P31277 338 aaPredicted RBP18.21■□□□□ 0.51
NDUFA9-208ENST00000544675 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
NDUFA9-208ENST00000544675 KCNA4P22459 653 aa18.11■□□□□ 0.49
NDUFA9-208ENST00000544675 NPM3O75607 178 aaKnown RBP18.05■□□□□ 0.48
NDUFA9-208ENST00000544675 DNAJC5BQ9UF47 199 aa17.8■□□□□ 0.44
NDUFA9-208ENST00000544675 DCAF8L1A6NGE4 600 aa17.7■□□□□ 0.42
NDUFA9-208ENST00000544675 RNF39Q9H2S5 420 aa17.27■□□□□ 0.36
NDUFA9-208ENST00000544675 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.24■□□□□ 0.35
NDUFA9-208ENST00000544675 SLC4A1APQ9BWU0 796 aaKnown RBP17.21■□□□□ 0.35
NDUFA9-208ENST00000544675 SLC4A2P04920 1241 aa17.11■□□□□ 0.33
NDUFA9-208ENST00000544675 C1QBPQ07021 282 aaKnown RBP17.09■□□□□ 0.33
NDUFA9-208ENST00000544675 U3KPZ7 1027 aaPredicted RBP16.96■□□□□ 0.31
NDUFA9-208ENST00000544675 CACNB1Q02641 598 aaPredicted RBP16.93■□□□□ 0.3
NDUFA9-208ENST00000544675 FOXD4L1Q9NU39 408 aa16.81■□□□□ 0.28
NDUFA9-208ENST00000544675 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.75■□□□□ 0.27
NDUFA9-208ENST00000544675 HNRNPUL2Q1KMD3 747 aaKnown RBP16.75■□□□□ 0.27
NDUFA9-208ENST00000544675 MYCNP04198 464 aaPredicted RBP16.73■□□□□ 0.27
NDUFA9-208ENST00000544675 ZBTB22O15209 634 aa16.65■□□□□ 0.26
NDUFA9-208ENST00000544675 APLP2Q06481 763 aa16.65■□□□□ 0.26
NDUFA9-208ENST00000544675 SAMD1Q6SPF0 538 aaPredicted RBP16.65■□□□□ 0.26
NDUFA9-208ENST00000544675 SPINK5Q9NQ38 1064 aaPredicted RBP16.51■□□□□ 0.23
NDUFA9-208ENST00000544675 CAPN15O75808 1086 aa16.45■□□□□ 0.22
NDUFA9-208ENST00000544675 ZNF219Q9P2Y4 722 aaPredicted RBP16.41■□□□□ 0.22
NDUFA9-208ENST00000544675 CSRNP3Q8WYN3 585 aa16.37■□□□□ 0.21
NDUFA9-208ENST00000544675 ATXN8OSP0DMR3 200 aa16.34■□□□□ 0.21
NDUFA9-208ENST00000544675 DSG3P32926 999 aa16.32■□□□□ 0.2
NDUFA9-208ENST00000544675 EHMT2Q96KQ7 1210 aa16.3■□□□□ 0.2
NDUFA9-208ENST00000544675 TRHP20396 242 aaPredicted RBP16.29■□□□□ 0.2
NDUFA9-208ENST00000544675 ATF5Q9Y2D1 282 aaPredicted RBP16.2■□□□□ 0.18
NDUFA9-208ENST00000544675 ABCB7O75027 752 aa16.07■□□□□ 0.16
NDUFA9-208ENST00000544675 POLA2Q14181 598 aa16.02■□□□□ 0.16
NDUFA9-208ENST00000544675 ZBTB12Q9Y330 459 aaPredicted RBP15.85■□□□□ 0.13
NDUFA9-208ENST00000544675 FBLN2P98095 1184 aa15.61■□□□□ 0.09
NDUFA9-208ENST00000544675 RBM42Q9BTD8 480 aaKnown RBP15.61■□□□□ 0.09
NDUFA9-208ENST00000544675 MKRN4PQ13434 485 aaPredicted RBP15.52■□□□□ 0.08
NDUFA9-208ENST00000544675 OSCARQ8IYS5 282 aa15.46■□□□□ 0.07
NDUFA9-208ENST00000544675 SPDYE2BA6NHP3 402 aa15.38■□□□□ 0.05
NDUFA9-208ENST00000544675 SPDYE6P0CI01 402 aa15.38■□□□□ 0.05
NDUFA9-208ENST00000544675 SPDYE2Q495Y8 402 aa15.38■□□□□ 0.05
NDUFA9-208ENST00000544675 AKT1S1Q96B36 256 aa15.35■□□□□ 0.05
NDUFA9-208ENST00000544675 SSUH2Q9Y2M2 353 aa15.23■□□□□ 0.03
NDUFA9-208ENST00000544675 ZNF692Q9BU19 519 aaPredicted RBP15.2■□□□□ 0.02
NDUFA9-208ENST00000544675 REM2Q8IYK8 340 aaPredicted RBP15.15■□□□□ 0.02
NDUFA9-208ENST00000544675 SPDYE4A6NLX3 237 aa15.05■□□□□ -0
NDUFA9-208ENST00000544675 CHRDL2Q6WN34 429 aa15□□□□□ -0.01
NDUFA9-208ENST00000544675 PABPN1Q86U42 306 aaKnown RBP eCLIP14.98□□□□□ -0.01
NDUFA9-208ENST00000544675 SPDYE1Q8NFV5 336 aaPredicted RBP14.97□□□□□ -0.01
NDUFA9-208ENST00000544675 PITPNM1O00562 1244 aa14.96□□□□□ -0.01
NDUFA9-208ENST00000544675 PROM2Q8N271 834 aa14.88□□□□□ -0.03
NDUFA9-208ENST00000544675 POTEHQ6S545 545 aa14.83□□□□□ -0.04
NDUFA9-208ENST00000544675 FXR2P51116 673 aaKnown RBP eCLIP14.8□□□□□ -0.04
NDUFA9-208ENST00000544675 STAG3Q9UJ98 1225 aa14.79□□□□□ -0.04
NDUFA9-208ENST00000544675 CLEC11AQ9Y240 323 aa14.79□□□□□ -0.04
NDUFA9-208ENST00000544675 FKBP8Q14318 412 aa14.76□□□□□ -0.05
NDUFA9-208ENST00000544675 PIP4P2Q8N4L2 257 aa14.73□□□□□ -0.05
NDUFA9-208ENST00000544675 PRR29P0C7W0 189 aa14.68□□□□□ -0.06
NDUFA9-208ENST00000544675 PRKAR2AP13861 404 aaKnown RBP14.57□□□□□ -0.08
NDUFA9-208ENST00000544675 CREBZFQ9NS37 354 aa14.46□□□□□ -0.09
NDUFA9-208ENST00000544675 CHADLQ6NUI6 762 aa14.45□□□□□ -0.1
NDUFA9-208ENST00000544675 FBXO3Q9UK99 471 aa14.43□□□□□ -0.1
NDUFA9-208ENST00000544675 FARP1Q9Y4F1 1045 aaPredicted RBP14.38□□□□□ -0.11
NDUFA9-208ENST00000544675 MNX1P50219 401 aaPredicted RBP14.31□□□□□ -0.12
NDUFA9-208ENST00000544675 C19orf67A6NJJ6 358 aa14.3□□□□□ -0.12
NDUFA9-208ENST00000544675 HAX1O00165 279 aa14.3□□□□□ -0.12
NDUFA9-208ENST00000544675 PLEKHG5O94827 1062 aa14.27□□□□□ -0.13
NDUFA9-208ENST00000544675 MIER1Q8N108 512 aa14.27□□□□□ -0.13
NDUFA9-208ENST00000544675 NPM1P06748 294 aaKnown RBP eCLIP14.25□□□□□ -0.13
NDUFA9-208ENST00000544675 PLCD3Q8N3E9 789 aa14.22□□□□□ -0.13
NDUFA9-208ENST00000544675 ZBTB47Q9UFB7 747 aaPredicted RBP14.19□□□□□ -0.14
NDUFA9-208ENST00000544675 VASPP50552 380 aaPredicted RBP14.18□□□□□ -0.14
NDUFA9-208ENST00000544675 EVX2Q03828 476 aa14.15□□□□□ -0.14
NDUFA9-208ENST00000544675 SP7Q8TDD2 431 aaPredicted RBP14.15□□□□□ -0.14
NDUFA9-208ENST00000544675 CD44P16070 742 aaKnown RBP14.14□□□□□ -0.15
NDUFA9-208ENST00000544675 PAK3O75914 559 aaPredicted RBP14.05□□□□□ -0.16
NDUFA9-208ENST00000544675 CLCN6P51797 869 aa14.05□□□□□ -0.16
NDUFA9-208ENST00000544675 ZNF579Q8NAF0 562 aaKnown RBP14.02□□□□□ -0.17
NDUFA9-208ENST00000544675 NUBP1P53384 320 aa14□□□□□ -0.17
NDUFA9-208ENST00000544675 ZRANB1Q9UGI0 708 aa14□□□□□ -0.17
NDUFA9-208ENST00000544675 IFNLR1Q8IU57 520 aaPredicted RBP13.95□□□□□ -0.18
NDUFA9-208ENST00000544675 RASEFQ8IZ41 740 aa13.95□□□□□ -0.18
NDUFA9-208ENST00000544675 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
NDUFA9-208ENST00000544675 GABBR2O75899 941 aa13.91□□□□□ -0.18
NDUFA9-208ENST00000544675 CCDC61Q9Y6R9 512 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms