RNA–Protein interactions for RNA: ENST00000544639.1

RAP1B-231, Transcript of RAP1B, member of RAS oncogene family, human

TSL 4

Gene RAP1B, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAP1B-231	ENST00000544639	AEBP2	Q6ZN18	517 aa	Predicted RBP	23.58	■■□□□ 1.37
RAP1B-231	ENST00000544639	CHIC1	Q5VXU3	224 aa		22.53	■■□□□ 1.2
RAP1B-231	ENST00000544639	SENP3	Q9H4L4	574 aa	Predicted RBP	20.17	■□□□□ 0.82
RAP1B-231	ENST00000544639	PHF23	Q9BUL5	403 aa	Predicted RBP	19.89	■□□□□ 0.77
RAP1B-231	ENST00000544639	FOXD1	Q16676	465 aa		18.74	■□□□□ 0.59
RAP1B-231	ENST00000544639	PLPPR3	Q6T4P5	718 aa		18.05	■□□□□ 0.48
RAP1B-231	ENST00000544639	MSH5	O43196	834 aa		17.57	■□□□□ 0.4
RAP1B-231	ENST00000544639	PPP6R1	Q9UPN7	881 aa		17.56	■□□□□ 0.4
RAP1B-231	ENST00000544639	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.53	■□□□□ 0.4
RAP1B-231	ENST00000544639	ADRA2B	P18089	450 aa		17.5	■□□□□ 0.39
RAP1B-231	ENST00000544639	POTED	Q86YR6	584 aa		16.95	■□□□□ 0.3
RAP1B-231	ENST00000544639	SCAF1	Q9H7N4	1312 aa	Known RBP	16.11	■□□□□ 0.17
RAP1B-231	ENST00000544639	MAPK8IP2	Q13387	824 aa	Predicted RBP	16.03	■□□□□ 0.16
RAP1B-231	ENST00000544639	DMRT2	Q9Y5R5	561 aa		16.01	■□□□□ 0.15
RAP1B-231	ENST00000544639	PPP4R3CP	Q6ZMV5	832 aa		15.8	■□□□□ 0.12
RAP1B-231	ENST00000544639	CNKSR2	Q8WXI2	1034 aa		15.52	■□□□□ 0.08
RAP1B-231	ENST00000544639	HOXD11	P31277	338 aa	Predicted RBP	15.46	■□□□□ 0.07
RAP1B-231	ENST00000544639	RNF216	Q9NWF9	866 aa	Predicted RBP	15.37	■□□□□ 0.05
RAP1B-231	ENST00000544639	NCBP3	Q53F19	620 aa	Known RBP	15.26	■□□□□ 0.03
RAP1B-231	ENST00000544639	DCAF8L1	A6NGE4	600 aa		15.25	■□□□□ 0.03
RAP1B-231	ENST00000544639	DNAJC5B	Q9UF47	199 aa		15	□□□□□ -0.01
RAP1B-231	ENST00000544639	NPM3	O75607	178 aa	Known RBP	14.99	□□□□□ -0.01
RAP1B-231	ENST00000544639	RNF39	Q9H2S5	420 aa		14.98	□□□□□ -0.01
RAP1B-231	ENST00000544639	CACNB1	Q02641	598 aa	Predicted RBP	14.97	□□□□□ -0.01
RAP1B-231	ENST00000544639	KCNA4	P22459	653 aa		14.93	□□□□□ -0.02
RAP1B-231	ENST00000544639	C1QBP	Q07021	282 aa	Known RBP	14.79	□□□□□ -0.04
RAP1B-231	ENST00000544639	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.68	□□□□□ -0.06
RAP1B-231	ENST00000544639		U3KPZ7	1027 aa	Predicted RBP	14.39	□□□□□ -0.11
RAP1B-231	ENST00000544639	SLC4A2	P04920	1241 aa		14.29	□□□□□ -0.12
RAP1B-231	ENST00000544639	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.23	□□□□□ -0.13
RAP1B-231	ENST00000544639	SPINK5	Q9NQ38	1064 aa	Predicted RBP	14.12	□□□□□ -0.15
RAP1B-231	ENST00000544639	CAPN15	O75808	1086 aa		14.11	□□□□□ -0.15
RAP1B-231	ENST00000544639	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	14.08	□□□□□ -0.16
RAP1B-231	ENST00000544639	APLP2	Q06481	763 aa		14.08	□□□□□ -0.16
RAP1B-231	ENST00000544639	HNRNPUL2	Q1KMD3	747 aa	Known RBP	14.08	□□□□□ -0.16
RAP1B-231	ENST00000544639	EHMT2	Q96KQ7	1210 aa		14.06	□□□□□ -0.16
RAP1B-231	ENST00000544639	DSG3	P32926	999 aa		14.04	□□□□□ -0.16
RAP1B-231	ENST00000544639	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.99	□□□□□ -0.17
RAP1B-231	ENST00000544639	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.94	□□□□□ -0.18
RAP1B-231	ENST00000544639	MYCN	P04198	464 aa	Predicted RBP	13.9	□□□□□ -0.18
RAP1B-231	ENST00000544639	TRH	P20396	242 aa	Predicted RBP	13.89	□□□□□ -0.19
RAP1B-231	ENST00000544639	CSRNP3	Q8WYN3	585 aa		13.83	□□□□□ -0.2
RAP1B-231	ENST00000544639	FOXD4L1	Q9NU39	408 aa		13.79	□□□□□ -0.2
RAP1B-231	ENST00000544639	ZBTB22	O15209	634 aa		13.75	□□□□□ -0.21
RAP1B-231	ENST00000544639	ABCB7	O75027	752 aa		13.75	□□□□□ -0.21
RAP1B-231	ENST00000544639	POLA2	Q14181	598 aa		13.56	□□□□□ -0.24
RAP1B-231	ENST00000544639	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.5	□□□□□ -0.25
RAP1B-231	ENST00000544639	RBM42	Q9BTD8	480 aa	Known RBP	13.45	□□□□□ -0.26
RAP1B-231	ENST00000544639	ATXN8OS	P0DMR3	200 aa		13.41	□□□□□ -0.26
RAP1B-231	ENST00000544639	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.37	□□□□□ -0.27
RAP1B-231	ENST00000544639	POTEH	Q6S545	545 aa		13.32	□□□□□ -0.28
RAP1B-231	ENST00000544639	AKT1S1	Q96B36	256 aa		13.14	□□□□□ -0.31
RAP1B-231	ENST00000544639	OSCAR	Q8IYS5	282 aa		13.1	□□□□□ -0.31
RAP1B-231	ENST00000544639	CHRDL2	Q6WN34	429 aa		13.07	□□□□□ -0.32
RAP1B-231	ENST00000544639	FBLN2	P98095	1184 aa		13.03	□□□□□ -0.32
RAP1B-231	ENST00000544639	REM2	Q8IYK8	340 aa	Predicted RBP	12.97	□□□□□ -0.33
RAP1B-231	ENST00000544639	SPDYE2B	A6NHP3	402 aa		12.94	□□□□□ -0.34
RAP1B-231	ENST00000544639	SPDYE6	P0CI01	402 aa		12.94	□□□□□ -0.34
RAP1B-231	ENST00000544639	SPDYE2	Q495Y8	402 aa		12.94	□□□□□ -0.34
RAP1B-231	ENST00000544639	MKRN4P	Q13434	485 aa	Predicted RBP	12.91	□□□□□ -0.34
RAP1B-231	ENST00000544639	PITPNM1	O00562	1244 aa		12.82	□□□□□ -0.36
RAP1B-231	ENST00000544639	SSUH2	Q9Y2M2	353 aa		12.77	□□□□□ -0.37
RAP1B-231	ENST00000544639	PIP4P2	Q8N4L2	257 aa		12.76	□□□□□ -0.37
RAP1B-231	ENST00000544639	ZNF692	Q9BU19	519 aa	Predicted RBP	12.76	□□□□□ -0.37
RAP1B-231	ENST00000544639	FXR2	P51116	673 aa	Known RBP eCLIP	12.74	□□□□□ -0.37
RAP1B-231	ENST00000544639	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.68	□□□□□ -0.38
RAP1B-231	ENST00000544639	CLEC11A	Q9Y240	323 aa		12.59	□□□□□ -0.39
RAP1B-231	ENST00000544639	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.56	□□□□□ -0.4
RAP1B-231	ENST00000544639	SP7	Q8TDD2	431 aa	Predicted RBP	12.53	□□□□□ -0.4
RAP1B-231	ENST00000544639	HAX1	O00165	279 aa		12.5	□□□□□ -0.41
RAP1B-231	ENST00000544639	PRKAR2A	P13861	404 aa	Known RBP	12.49	□□□□□ -0.41
RAP1B-231	ENST00000544639	FKBP8	Q14318	412 aa		12.47	□□□□□ -0.41
RAP1B-231	ENST00000544639	PRR29	P0C7W0	189 aa		12.44	□□□□□ -0.42
RAP1B-231	ENST00000544639	SPDYE4	A6NLX3	237 aa		12.35	□□□□□ -0.43
RAP1B-231	ENST00000544639	C19orf67	A6NJJ6	358 aa		12.32	□□□□□ -0.44
RAP1B-231	ENST00000544639	EVX2	Q03828	476 aa		12.32	□□□□□ -0.44
RAP1B-231	ENST00000544639	CHADL	Q6NUI6	762 aa		12.32	□□□□□ -0.44
RAP1B-231	ENST00000544639	STAG3	Q9UJ98	1225 aa		12.3	□□□□□ -0.44
RAP1B-231	ENST00000544639	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.21	□□□□□ -0.45
RAP1B-231	ENST00000544639	CREBZF	Q9NS37	354 aa		12.14	□□□□□ -0.47
RAP1B-231	ENST00000544639	PROM2	Q8N271	834 aa		12.13	□□□□□ -0.47
RAP1B-231	ENST00000544639	CD44	P16070	742 aa	Known RBP	12.11	□□□□□ -0.47
RAP1B-231	ENST00000544639	GABBR2	O75899	941 aa		12.09	□□□□□ -0.47
RAP1B-231	ENST00000544639	CLCN6	P51797	869 aa		12.05	□□□□□ -0.48
RAP1B-231	ENST00000544639	MNX1	P50219	401 aa	Predicted RBP	11.96	□□□□□ -0.49
RAP1B-231	ENST00000544639	ZNF579	Q8NAF0	562 aa	Known RBP	11.96	□□□□□ -0.49
RAP1B-231	ENST00000544639	FBXO3	Q9UK99	471 aa		11.96	□□□□□ -0.49
RAP1B-231	ENST00000544639	NPM1	P06748	294 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
RAP1B-231	ENST00000544639	ZRANB1	Q9UGI0	708 aa		11.94	□□□□□ -0.5
RAP1B-231	ENST00000544639	PAK3	O75914	559 aa	Predicted RBP	11.9	□□□□□ -0.5
RAP1B-231	ENST00000544639	POTEI	P0CG38	1075 aa		11.82	□□□□□ -0.52
RAP1B-231	ENST00000544639	VASP	P50552	380 aa	Predicted RBP	11.82	□□□□□ -0.52
RAP1B-231	ENST00000544639	PLEKHG5	O94827	1062 aa		11.8	□□□□□ -0.52
RAP1B-231	ENST00000544639	DCBLD2	Q96PD2	775 aa		11.78	□□□□□ -0.52
RAP1B-231	ENST00000544639	GALR2	O43603	387 aa	Predicted RBP	11.76	□□□□□ -0.53
RAP1B-231	ENST00000544639	MIER1	Q8N108	512 aa		11.76	□□□□□ -0.53
RAP1B-231	ENST00000544639	PHF12	Q96QT6	1004 aa		11.75	□□□□□ -0.53
RAP1B-231	ENST00000544639	LHX8	Q68G74	356 aa		11.74	□□□□□ -0.53
RAP1B-231	ENST00000544639	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.73	□□□□□ -0.53
RAP1B-231	ENST00000544639	RTN4	Q9NQC3	1192 aa	Known RBP	11.72	□□□□□ -0.53

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