RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 AEBP2Q6ZN18 517 aaPredicted RBP12.19□□□□□ -0.46
YBX3-214ENST00000544501 CHIC1Q5VXU3 224 aa12.02□□□□□ -0.49
YBX3-214ENST00000544501 PHF23Q9BUL5 403 aaPredicted RBP10.55□□□□□ -0.72
YBX3-214ENST00000544501 SENP3Q9H4L4 574 aaPredicted RBP10.39□□□□□ -0.75
YBX3-214ENST00000544501 PLPPR3Q6T4P5 718 aa9.81□□□□□ -0.84
YBX3-214ENST00000544501 FOXD1Q16676 465 aa9.6□□□□□ -0.87
YBX3-214ENST00000544501 PPP6R1Q9UPN7 881 aa9.28□□□□□ -0.92
YBX3-214ENST00000544501 ADRA2BP18089 450 aa9.27□□□□□ -0.93
YBX3-214ENST00000544501 PIAS4Q8N2W9 510 aaPredicted RBP9.07□□□□□ -0.96
YBX3-214ENST00000544501 MSH5O43196 834 aa8.87□□□□□ -0.99
YBX3-214ENST00000544501 PPP4R3CPQ6ZMV5 832 aa8.63□□□□□ -1.03
YBX3-214ENST00000544501 SCAF1Q9H7N4 1312 aaKnown RBP8.55□□□□□ -1.04
YBX3-214ENST00000544501 KCNA4P22459 653 aa8.48□□□□□ -1.05
YBX3-214ENST00000544501 NCBP3Q53F19 620 aaKnown RBP8.47□□□□□ -1.05
YBX3-214ENST00000544501 CNKSR2Q8WXI2 1034 aa8.4□□□□□ -1.06
YBX3-214ENST00000544501 MAPK8IP2Q13387 824 aaPredicted RBP8.38□□□□□ -1.07
YBX3-214ENST00000544501 NPM3O75607 178 aaKnown RBP8.3□□□□□ -1.08
YBX3-214ENST00000544501 DMRT2Q9Y5R5 561 aa8.3□□□□□ -1.08
YBX3-214ENST00000544501 RNF216Q9NWF9 866 aaPredicted RBP8.22□□□□□ -1.09
YBX3-214ENST00000544501 HOXD11P31277 338 aaPredicted RBP8.16□□□□□ -1.1
YBX3-214ENST00000544501 DNAJC5BQ9UF47 199 aa8.13□□□□□ -1.11
YBX3-214ENST00000544501 SLC4A1APQ9BWU0 796 aaKnown RBP8.11□□□□□ -1.11
YBX3-214ENST00000544501 EHMT2Q96KQ7 1210 aa7.92□□□□□ -1.14
YBX3-214ENST00000544501 POTEDQ86YR6 584 aa7.9□□□□□ -1.14
YBX3-214ENST00000544501 DCAF8L1A6NGE4 600 aa7.89□□□□□ -1.15
YBX3-214ENST00000544501 CSRNP3Q8WYN3 585 aa7.83□□□□□ -1.16
YBX3-214ENST00000544501 FOXD4L1Q9NU39 408 aa7.82□□□□□ -1.16
YBX3-214ENST00000544501 SLC4A2P04920 1241 aa7.81□□□□□ -1.16
YBX3-214ENST00000544501 ZBTB22O15209 634 aa7.8□□□□□ -1.16
YBX3-214ENST00000544501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.76□□□□□ -1.178e-10■■■□□ 19
YBX3-214ENST00000544501 MYCNP04198 464 aaPredicted RBP7.69□□□□□ -1.18
YBX3-214ENST00000544501 U3KPZ7 1027 aaPredicted RBP7.63□□□□□ -1.19
YBX3-214ENST00000544501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.62□□□□□ -1.19
YBX3-214ENST00000544501 HNRNPUL2Q1KMD3 747 aaKnown RBP7.62□□□□□ -1.19
YBX3-214ENST00000544501 ATXN8OSP0DMR3 200 aa7.59□□□□□ -1.19
YBX3-214ENST00000544501 RNF39Q9H2S5 420 aa7.59□□□□□ -1.19
YBX3-214ENST00000544501 SAMD1Q6SPF0 538 aaPredicted RBP7.58□□□□□ -1.2
YBX3-214ENST00000544501 APLP2Q06481 763 aa7.53□□□□□ -1.2
YBX3-214ENST00000544501 C1QBPQ07021 282 aaKnown RBP7.53□□□□□ -1.2
YBX3-214ENST00000544501 ATF5Q9Y2D1 282 aaPredicted RBP7.42□□□□□ -1.22
YBX3-214ENST00000544501 SPINK5Q9NQ38 1064 aaPredicted RBP7.38□□□□□ -1.23
YBX3-214ENST00000544501 ZNF219Q9P2Y4 722 aaPredicted RBP7.38□□□□□ -1.23
YBX3-214ENST00000544501 CAPN15O75808 1086 aa7.36□□□□□ -1.23
YBX3-214ENST00000544501 TRHP20396 242 aaPredicted RBP7.33□□□□□ -1.24
YBX3-214ENST00000544501 CACNB1Q02641 598 aaPredicted RBP7.31□□□□□ -1.24
YBX3-214ENST00000544501 POLA2Q14181 598 aa7.25□□□□□ -1.25
YBX3-214ENST00000544501 DSG3P32926 999 aa7.24□□□□□ -1.25
YBX3-214ENST00000544501 ABCB7O75027 752 aa7.19□□□□□ -1.26
YBX3-214ENST00000544501 ZBTB12Q9Y330 459 aaPredicted RBP7.19□□□□□ -1.26
YBX3-214ENST00000544501 FBLN2P98095 1184 aa7.16□□□□□ -1.26
YBX3-214ENST00000544501 MKRN4PQ13434 485 aaPredicted RBP7.12□□□□□ -1.27
YBX3-214ENST00000544501 FKBP8Q14318 412 aa7.06□□□□□ -1.28
YBX3-214ENST00000544501 SPDYE4A6NLX3 237 aa7.01□□□□□ -1.29
YBX3-214ENST00000544501 SPDYE2BA6NHP3 402 aa6.98□□□□□ -1.29
YBX3-214ENST00000544501 SPDYE6P0CI01 402 aa6.98□□□□□ -1.29
YBX3-214ENST00000544501 SPDYE2Q495Y8 402 aa6.98□□□□□ -1.29
YBX3-214ENST00000544501 OSCARQ8IYS5 282 aa6.98□□□□□ -1.29
YBX3-214ENST00000544501 PROM2Q8N271 834 aa6.94□□□□□ -1.3
YBX3-214ENST00000544501 ZNF692Q9BU19 519 aaPredicted RBP6.94□□□□□ -1.3
YBX3-214ENST00000544501 RBM42Q9BTD8 480 aaKnown RBP6.93□□□□□ -1.3
YBX3-214ENST00000544501 SSUH2Q9Y2M2 353 aa6.92□□□□□ -1.3
YBX3-214ENST00000544501 FBXO3Q9UK99 471 aa6.86□□□□□ -1.31
YBX3-214ENST00000544501 AKT1S1Q96B36 256 aa6.85□□□□□ -1.31
YBX3-214ENST00000544501 PABPN1Q86U42 306 aaKnown RBP eCLIP6.84□□□□□ -1.31
YBX3-214ENST00000544501 STAG3Q9UJ98 1225 aa6.8□□□□□ -1.32
YBX3-214ENST00000544501 REM2Q8IYK8 340 aaPredicted RBP6.76□□□□□ -1.33
YBX3-214ENST00000544501 SPDYE1Q8NFV5 336 aaPredicted RBP6.75□□□□□ -1.33
YBX3-214ENST00000544501 VASPP50552 380 aaPredicted RBP6.72□□□□□ -1.33
YBX3-214ENST00000544501 PITPNM1O00562 1244 aa6.67□□□□□ -1.34
YBX3-214ENST00000544501 CLEC11AQ9Y240 323 aa6.67□□□□□ -1.34
YBX3-214ENST00000544501 PRR29P0C7W0 189 aa6.65□□□□□ -1.34
YBX3-214ENST00000544501 MIER1Q8N108 512 aa6.65□□□□□ -1.34
YBX3-214ENST00000544501 PLEKHG5O94827 1062 aa6.64□□□□□ -1.35
YBX3-214ENST00000544501 PLCD3Q8N3E9 789 aa6.64□□□□□ -1.35
YBX3-214ENST00000544501 IFNLR1Q8IU57 520 aaPredicted RBP6.63□□□□□ -1.35
YBX3-214ENST00000544501 ZBTB47Q9UFB7 747 aaPredicted RBP6.62□□□□□ -1.35
YBX3-214ENST00000544501 AMER1Q5JTC6 1135 aaPredicted RBP6.61□□□□□ -1.35
YBX3-214ENST00000544501 CHRDL2Q6WN34 429 aa6.58□□□□□ -1.36
YBX3-214ENST00000544501 KLHL34Q8N239 644 aa6.58□□□□□ -1.36
YBX3-214ENST00000544501 CREBZFQ9NS37 354 aa6.57□□□□□ -1.36
YBX3-214ENST00000544501 FXR2P51116 673 aaKnown RBP eCLIP6.56□□□□□ -1.36
YBX3-214ENST00000544501 SPOCK2Q92563 424 aa6.56□□□□□ -1.36
YBX3-214ENST00000544501 MNX1P50219 401 aaPredicted RBP6.53□□□□□ -1.36
YBX3-214ENST00000544501 RTN4Q9NQC3 1192 aaKnown RBP6.53□□□□□ -1.36
YBX3-214ENST00000544501 NPM1P06748 294 aaKnown RBP eCLIP6.5□□□□□ -1.37
YBX3-214ENST00000544501 PRKAR2AP13861 404 aaKnown RBP6.5□□□□□ -1.37
YBX3-214ENST00000544501 PIP4P2Q8N4L2 257 aa6.5□□□□□ -1.37
YBX3-214ENST00000544501 CHADLQ6NUI6 762 aa6.48□□□□□ -1.37
YBX3-214ENST00000544501 FARP1Q9Y4F1 1045 aaPredicted RBP6.48□□□□□ -1.37
YBX3-214ENST00000544501 NUBP1P53384 320 aa6.47□□□□□ -1.37
YBX3-214ENST00000544501 PKD2Q13563 968 aa6.44□□□□□ -1.38
YBX3-214ENST00000544501 GSE1Q14687 1217 aa6.44□□□□□ -1.38
YBX3-214ENST00000544501 TRIM41Q8WV44 630 aa6.43□□□□□ -1.38
YBX3-214ENST00000544501 FAM212AQ96EL1 285 aa6.43□□□□□ -1.38
YBX3-214ENST00000544501 CIZ1Q9ULV3 898 aaPredicted RBP6.41□□□□□ -1.38
YBX3-214ENST00000544501 DCAF8Q5TAQ9 597 aa6.4□□□□□ -1.38
YBX3-214ENST00000544501 RASEFQ8IZ41 740 aa6.4□□□□□ -1.38
YBX3-214ENST00000544501 ECM2O94769 699 aaPredicted RBP6.38□□□□□ -1.39
YBX3-214ENST00000544501 CHRM1P11229 460 aaPredicted RBP6.37□□□□□ -1.39
YBX3-214ENST00000544501 PAK3O75914 559 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms