RNA–Protein interactions for RNA: ENST00000543991.1

SMCO2-206, Transcript of single-pass membrane protein with coiled-coil domains 2, humanhuman

TSL 3

Gene SMCO2, Length 486 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO2-206ENST00000543991 CHIC1Q5VXU3 224 aa26.79■■□□□ 1.88
SMCO2-206ENST00000543991 AEBP2Q6ZN18 517 aaPredicted RBP26.73■■□□□ 1.87
SMCO2-206ENST00000543991 PHF23Q9BUL5 403 aaPredicted RBP23.62■■□□□ 1.37
SMCO2-206ENST00000543991 SENP3Q9H4L4 574 aaPredicted RBP22.59■■□□□ 1.21
SMCO2-206ENST00000543991 PLPPR3Q6T4P5 718 aa22.06■■□□□ 1.12
SMCO2-206ENST00000543991 FOXD1Q16676 465 aa20.87■□□□□ 0.93
SMCO2-206ENST00000543991 ADRA2BP18089 450 aa20.64■□□□□ 0.89
SMCO2-206ENST00000543991 PPP6R1Q9UPN7 881 aa20.62■□□□□ 0.89
SMCO2-206ENST00000543991 PIAS4Q8N2W9 510 aaPredicted RBP19.84■□□□□ 0.77
SMCO2-206ENST00000543991 KCNA4P22459 653 aa19.82■□□□□ 0.76
SMCO2-206ENST00000543991 PPP4R3CPQ6ZMV5 832 aa19.52■□□□□ 0.72
SMCO2-206ENST00000543991 EHMT2Q96KQ7 1210 aa19.23■□□□□ 0.67
SMCO2-206ENST00000543991 NCBP3Q53F19 620 aaKnown RBP19.22■□□□□ 0.67
SMCO2-206ENST00000543991 SLC4A1APQ9BWU0 796 aaKnown RBP19.01■□□□□ 0.63
SMCO2-206ENST00000543991 MSH5O43196 834 aa19■□□□□ 0.63
SMCO2-206ENST00000543991 NPM3O75607 178 aaKnown RBP18.92■□□□□ 0.62
SMCO2-206ENST00000543991 SCAF1Q9H7N4 1312 aaKnown RBP18.91■□□□□ 0.62
SMCO2-206ENST00000543991 CNKSR2Q8WXI2 1034 aa18.83■□□□□ 0.6
SMCO2-206ENST00000543991 CSRNP3Q8WYN3 585 aa18.72■□□□□ 0.59
SMCO2-206ENST00000543991 MAPK8IP2Q13387 824 aaPredicted RBP18.52■□□□□ 0.56
SMCO2-206ENST00000543991 DNAJC5BQ9UF47 199 aa18.32■□□□□ 0.52
SMCO2-206ENST00000543991 RNF216Q9NWF9 866 aaPredicted RBP18.3■□□□□ 0.52
SMCO2-206ENST00000543991 ZBTB22O15209 634 aa18.25■□□□□ 0.51
SMCO2-206ENST00000543991 DMRT2Q9Y5R5 561 aa18.15■□□□□ 0.5
SMCO2-206ENST00000543991 FOXD4L1Q9NU39 408 aa18.06■□□□□ 0.48
SMCO2-206ENST00000543991 HOXD11P31277 338 aaPredicted RBP18.04■□□□□ 0.48
SMCO2-206ENST00000543991 SLC4A2P04920 1241 aa17.7■□□□□ 0.42
SMCO2-206ENST00000543991 MYCNP04198 464 aaPredicted RBP17.47■□□□□ 0.39
SMCO2-206ENST00000543991 ATXN8OSP0DMR3 200 aa17.4■□□□□ 0.38
SMCO2-206ENST00000543991 DCAF8L1A6NGE4 600 aa17.3■□□□□ 0.36
SMCO2-206ENST00000543991 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.19■□□□□ 0.34
SMCO2-206ENST00000543991 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.32
SMCO2-206ENST00000543991 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
SMCO2-206ENST00000543991 SAMD1Q6SPF0 538 aaPredicted RBP16.99■□□□□ 0.31
SMCO2-206ENST00000543991 U3KPZ7 1027 aaPredicted RBP16.98■□□□□ 0.31
SMCO2-206ENST00000543991 ATF5Q9Y2D1 282 aaPredicted RBP16.94■□□□□ 0.3
SMCO2-206ENST00000543991 FKBP8Q14318 412 aa16.87■□□□□ 0.29
SMCO2-206ENST00000543991 APLP2Q06481 763 aa16.69■□□□□ 0.26
SMCO2-206ENST00000543991 ZNF219Q9P2Y4 722 aaPredicted RBP16.62■□□□□ 0.25
SMCO2-206ENST00000543991 AMER1Q5JTC6 1135 aaPredicted RBP16.59■□□□□ 0.25
SMCO2-206ENST00000543991 RTN4Q9NQC3 1192 aaKnown RBP16.54■□□□□ 0.24
SMCO2-206ENST00000543991 RNF39Q9H2S5 420 aa16.34■□□□□ 0.21
SMCO2-206ENST00000543991 TRHP20396 242 aaPredicted RBP16.29■□□□□ 0.2
SMCO2-206ENST00000543991 SPINK5Q9NQ38 1064 aaPredicted RBP16.29■□□□□ 0.2
SMCO2-206ENST00000543991 MKRN4PQ13434 485 aaPredicted RBP16.24■□□□□ 0.19
SMCO2-206ENST00000543991 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
SMCO2-206ENST00000543991 FBLN2P98095 1184 aa16.21■□□□□ 0.19
SMCO2-206ENST00000543991 CAPN15O75808 1086 aa16.2■□□□□ 0.18
SMCO2-206ENST00000543991 C1QBPQ07021 282 aaKnown RBP16.19■□□□□ 0.18
SMCO2-206ENST00000543991 POLA2Q14181 598 aa16.19■□□□□ 0.18
SMCO2-206ENST00000543991 FBXO3Q9UK99 471 aa16.11■□□□□ 0.17
SMCO2-206ENST00000543991 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
SMCO2-206ENST00000543991 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
SMCO2-206ENST00000543991 PROM2Q8N271 834 aa16.06■□□□□ 0.16
SMCO2-206ENST00000543991 ZBTB12Q9Y330 459 aaPredicted RBP15.99■□□□□ 0.15
SMCO2-206ENST00000543991 ABCB7O75027 752 aa15.94■□□□□ 0.14
SMCO2-206ENST00000543991 VASPP50552 380 aaPredicted RBP15.86■□□□□ 0.13
SMCO2-206ENST00000543991 DSG3P32926 999 aa15.78■□□□□ 0.12
SMCO2-206ENST00000543991 IFNLR1Q8IU57 520 aaPredicted RBP15.69■□□□□ 0.1
SMCO2-206ENST00000543991 ZNF692Q9BU19 519 aaPredicted RBP15.65■□□□□ 0.1
SMCO2-206ENST00000543991 SPDYE2BA6NHP3 402 aa15.61■□□□□ 0.09
SMCO2-206ENST00000543991 SPDYE6P0CI01 402 aa15.61■□□□□ 0.09
SMCO2-206ENST00000543991 SPDYE2Q495Y8 402 aa15.61■□□□□ 0.09
SMCO2-206ENST00000543991 OSCARQ8IYS5 282 aa15.6■□□□□ 0.09
SMCO2-206ENST00000543991 SSUH2Q9Y2M2 353 aa15.56■□□□□ 0.08
SMCO2-206ENST00000543991 STAG3Q9UJ98 1225 aa15.52■□□□□ 0.08
SMCO2-206ENST00000543991 PABPN1Q86U42 306 aaKnown RBP eCLIP15.46■□□□□ 0.07
SMCO2-206ENST00000543991 PKD2Q13563 968 aa15.43■□□□□ 0.06
SMCO2-206ENST00000543991 KLHL34Q8N239 644 aa15.43■□□□□ 0.06
SMCO2-206ENST00000543991 CACNB1Q02641 598 aaPredicted RBP15.41■□□□□ 0.06
SMCO2-206ENST00000543991 SPOCK2Q92563 424 aa15.41■□□□□ 0.06
SMCO2-206ENST00000543991 PLCD3Q8N3E9 789 aa15.36■□□□□ 0.05
SMCO2-206ENST00000543991 DCAF8L2P0C7V8 631 aa15.34■□□□□ 0.05
SMCO2-206ENST00000543991 PLCB2Q00722 1185 aa15.3■□□□□ 0.04
SMCO2-206ENST00000543991 MIER1Q8N108 512 aa15.3■□□□□ 0.04
SMCO2-206ENST00000543991 ECM2O94769 699 aaPredicted RBP15.21■□□□□ 0.03
SMCO2-206ENST00000543991 PLEKHG5O94827 1062 aa15.19■□□□□ 0.02
SMCO2-206ENST00000543991 ZBTB47Q9UFB7 747 aaPredicted RBP15.16■□□□□ 0.02
SMCO2-206ENST00000543991 HAP1P54257 671 aaPredicted RBP15.07■□□□□ 0
SMCO2-206ENST00000543991 RGL2O15211 777 aa15.04■□□□□ -0
SMCO2-206ENST00000543991 BBXQ8WY36 941 aaPredicted RBP15.04■□□□□ -0
SMCO2-206ENST00000543991 RBM42Q9BTD8 480 aaKnown RBP15.03■□□□□ -0
SMCO2-206ENST00000543991 CIZ1Q9ULV3 898 aaPredicted RBP15.03■□□□□ -0
SMCO2-206ENST00000543991 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.01□□□□□ -0.01
SMCO2-206ENST00000543991 NPM1P06748 294 aaKnown RBP eCLIP14.99□□□□□ -0.01
SMCO2-206ENST00000543991 AKT1S1Q96B36 256 aa14.99□□□□□ -0.01
SMCO2-206ENST00000543991 SPDYE1Q8NFV5 336 aaPredicted RBP14.98□□□□□ -0.01
SMCO2-206ENST00000543991 TRIM41Q8WV44 630 aa14.95□□□□□ -0.02
SMCO2-206ENST00000543991 VSIG10Q8N0Z9 540 aa14.89□□□□□ -0.03
SMCO2-206ENST00000543991 GSE1Q14687 1217 aa14.88□□□□□ -0.03
SMCO2-206ENST00000543991 PAXIP1Q6ZW49 1069 aaPredicted RBP14.87□□□□□ -0.03
SMCO2-206ENST00000543991 CLEC11AQ9Y240 323 aa14.86□□□□□ -0.03
SMCO2-206ENST00000543991 PRR29P0C7W0 189 aa14.85□□□□□ -0.03
SMCO2-206ENST00000543991 NUBP1P53384 320 aa14.85□□□□□ -0.03
SMCO2-206ENST00000543991 REM2Q8IYK8 340 aaPredicted RBP14.84□□□□□ -0.03
SMCO2-206ENST00000543991 CFAP44Q96MT7 982 aa14.83□□□□□ -0.04
SMCO2-206ENST00000543991 CHGAP10645 457 aaKnown RBP14.82□□□□□ -0.04
SMCO2-206ENST00000543991 CREBZFQ9NS37 354 aa14.81□□□□□ -0.04
SMCO2-206ENST00000543991 SPRYD3Q8NCJ5 442 aa14.79□□□□□ -0.04
SMCO2-206ENST00000543991 DCAF8Q5TAQ9 597 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms