RNA–Protein interactions for RNA: ENST00000542813.2

SFSWAP-211, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-211ENST00000542813 AEBP2Q6ZN18 517 aaPredicted RBP18.18■□□□□ 0.5
SFSWAP-211ENST00000542813 CHIC1Q5VXU3 224 aa17.28■□□□□ 0.36
SFSWAP-211ENST00000542813 SENP3Q9H4L4 574 aaPredicted RBP15.56■□□□□ 0.08
SFSWAP-211ENST00000542813 PHF23Q9BUL5 403 aaPredicted RBP15.33■□□□□ 0.04
SFSWAP-211ENST00000542813 FOXD1Q16676 465 aa14.47□□□□□ -0.09
SFSWAP-211ENST00000542813 POTEDQ86YR6 584 aa14.15□□□□□ -0.14
SFSWAP-211ENST00000542813 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.2
SFSWAP-211ENST00000542813 MSH5O43196 834 aa13.58□□□□□ -0.24
SFSWAP-211ENST00000542813 PIAS4Q8N2W9 510 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-211ENST00000542813 PPP6R1Q9UPN7 881 aa13.5□□□□□ -0.25
SFSWAP-211ENST00000542813 ADRA2BP18089 450 aa13.47□□□□□ -0.25
SFSWAP-211ENST00000542813 SCAF1Q9H7N4 1312 aaKnown RBP12.37□□□□□ -0.43
SFSWAP-211ENST00000542813 MAPK8IP2Q13387 824 aaPredicted RBP12.36□□□□□ -0.43
SFSWAP-211ENST00000542813 DMRT2Q9Y5R5 561 aa12.32□□□□□ -0.44
SFSWAP-211ENST00000542813 PPP4R3CPQ6ZMV5 832 aa12.1□□□□□ -0.47
SFSWAP-211ENST00000542813 CACNB1Q02641 598 aaPredicted RBP11.95□□□□□ -0.5
SFSWAP-211ENST00000542813 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
SFSWAP-211ENST00000542813 HOXD11P31277 338 aaPredicted RBP11.87□□□□□ -0.51
SFSWAP-211ENST00000542813 DCAF8L1A6NGE4 600 aa11.8□□□□□ -0.52
SFSWAP-211ENST00000542813 RNF216Q9NWF9 866 aaPredicted RBP11.79□□□□□ -0.52
SFSWAP-211ENST00000542813 NCBP3Q53F19 620 aaKnown RBP11.66□□□□□ -0.54
SFSWAP-211ENST00000542813 RNF39Q9H2S5 420 aa11.57□□□□□ -0.56
SFSWAP-211ENST00000542813 DNAJC5BQ9UF47 199 aa11.5□□□□□ -0.57
SFSWAP-211ENST00000542813 NPM3O75607 178 aaKnown RBP11.47□□□□□ -0.57
SFSWAP-211ENST00000542813 C1QBPQ07021 282 aaKnown RBP11.42□□□□□ -0.58
SFSWAP-211ENST00000542813 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.3□□□□□ -0.61e-9■■■■□ 25.1
SFSWAP-211ENST00000542813 KCNA4P22459 653 aa11.22□□□□□ -0.61
SFSWAP-211ENST00000542813 U3KPZ7 1027 aaPredicted RBP11.06□□□□□ -0.64
SFSWAP-211ENST00000542813 POTEHQ6S545 545 aa10.97□□□□□ -0.65
SFSWAP-211ENST00000542813 SLC4A2P04920 1241 aa10.94□□□□□ -0.66
SFSWAP-211ENST00000542813 CAPN15O75808 1086 aa10.89□□□□□ -0.67
SFSWAP-211ENST00000542813 SPINK5Q9NQ38 1064 aaPredicted RBP10.89□□□□□ -0.67
SFSWAP-211ENST00000542813 DSG3P32926 999 aa10.83□□□□□ -0.68
SFSWAP-211ENST00000542813 APLP2Q06481 763 aa10.81□□□□□ -0.68
SFSWAP-211ENST00000542813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.79□□□□□ -0.68
SFSWAP-211ENST00000542813 HNRNPUL2Q1KMD3 747 aaKnown RBP10.79□□□□□ -0.68
SFSWAP-211ENST00000542813 ZNF219Q9P2Y4 722 aaPredicted RBP10.72□□□□□ -0.69
SFSWAP-211ENST00000542813 TRHP20396 242 aaPredicted RBP10.71□□□□□ -0.69
SFSWAP-211ENST00000542813 SAMD1Q6SPF0 538 aaPredicted RBP10.71□□□□□ -0.69
SFSWAP-211ENST00000542813 MYCNP04198 464 aaPredicted RBP10.63□□□□□ -0.71
SFSWAP-211ENST00000542813 ABCB7O75027 752 aa10.62□□□□□ -0.71
SFSWAP-211ENST00000542813 SLC4A1APQ9BWU0 796 aaKnown RBP10.61□□□□□ -0.71
SFSWAP-211ENST00000542813 FOXD4L1Q9NU39 408 aa10.5□□□□□ -0.73
SFSWAP-211ENST00000542813 POLA2Q14181 598 aa10.42□□□□□ -0.74
SFSWAP-211ENST00000542813 EHMT2Q96KQ7 1210 aa10.36□□□□□ -0.75
SFSWAP-211ENST00000542813 RBM42Q9BTD8 480 aaKnown RBP10.36□□□□□ -0.75
SFSWAP-211ENST00000542813 ATF5Q9Y2D1 282 aaPredicted RBP10.34□□□□□ -0.75
SFSWAP-211ENST00000542813 ZBTB22O15209 634 aa10.31□□□□□ -0.76
SFSWAP-211ENST00000542813 ZBTB12Q9Y330 459 aaPredicted RBP10.25□□□□□ -0.77
SFSWAP-211ENST00000542813 ATXN8OSP0DMR3 200 aa10.2□□□□□ -0.78
SFSWAP-211ENST00000542813 CHRDL2Q6WN34 429 aa10.11□□□□□ -0.79
SFSWAP-211ENST00000542813 AKT1S1Q96B36 256 aa10.11□□□□□ -0.79
SFSWAP-211ENST00000542813 OSCARQ8IYS5 282 aa10.09□□□□□ -0.79
SFSWAP-211ENST00000542813 REM2Q8IYK8 340 aaPredicted RBP10□□□□□ -0.81
SFSWAP-211ENST00000542813 SP7Q8TDD2 431 aaPredicted RBP10□□□□□ -0.81
SFSWAP-211ENST00000542813 FBLN2P98095 1184 aa9.98□□□□□ -0.81
SFSWAP-211ENST00000542813 CSRNP3Q8WYN3 585 aa9.92□□□□□ -0.82
SFSWAP-211ENST00000542813 SPDYE2BA6NHP3 402 aa9.91□□□□□ -0.82
SFSWAP-211ENST00000542813 SPDYE6P0CI01 402 aa9.91□□□□□ -0.82
SFSWAP-211ENST00000542813 SPDYE2Q495Y8 402 aa9.91□□□□□ -0.82
SFSWAP-211ENST00000542813 PITPNM1O00562 1244 aa9.89□□□□□ -0.83
SFSWAP-211ENST00000542813 MKRN4PQ13434 485 aaPredicted RBP9.87□□□□□ -0.83
SFSWAP-211ENST00000542813 PIP4P2Q8N4L2 257 aa9.86□□□□□ -0.83
SFSWAP-211ENST00000542813 FXR2P51116 673 aaKnown RBP eCLIP9.81□□□□□ -0.84
SFSWAP-211ENST00000542813 ZNF692Q9BU19 519 aaPredicted RBP9.79□□□□□ -0.84
SFSWAP-211ENST00000542813 SSUH2Q9Y2M2 353 aa9.77□□□□□ -0.85
SFSWAP-211ENST00000542813 HAX1O00165 279 aa9.74□□□□□ -0.85
SFSWAP-211ENST00000542813 SPDYE1Q8NFV5 336 aaPredicted RBP9.74□□□□□ -0.85
SFSWAP-211ENST00000542813 CLEC11AQ9Y240 323 aa9.71□□□□□ -0.86
SFSWAP-211ENST00000542813 PRKAR2AP13861 404 aaKnown RBP9.64□□□□□ -0.87
SFSWAP-211ENST00000542813 PABPN1Q86U42 306 aaKnown RBP eCLIP9.63□□□□□ -0.87
SFSWAP-211ENST00000542813 EVX2Q03828 476 aa9.62□□□□□ -0.87
SFSWAP-211ENST00000542813 PRR29P0C7W0 189 aa9.56□□□□□ -0.88
SFSWAP-211ENST00000542813 CHADLQ6NUI6 762 aa9.51□□□□□ -0.89
SFSWAP-211ENST00000542813 C19orf67A6NJJ6 358 aa9.5□□□□□ -0.89
SFSWAP-211ENST00000542813 SPDYE4A6NLX3 237 aa9.42□□□□□ -0.9
SFSWAP-211ENST00000542813 SLC24A1O60721 1099 aa9.41□□□□□ -0.9
SFSWAP-211ENST00000542813 STAG3Q9UJ98 1225 aa9.4□□□□□ -0.9
SFSWAP-211ENST00000542813 LHX8Q68G74 356 aa9.39□□□□□ -0.91
SFSWAP-211ENST00000542813 FARP1Q9Y4F1 1045 aaPredicted RBP9.39□□□□□ -0.91
SFSWAP-211ENST00000542813 GABBR2O75899 941 aa9.35□□□□□ -0.91
SFSWAP-211ENST00000542813 PLSCR2Q9NRY7 297 aa9.34□□□□□ -0.91
SFSWAP-211ENST00000542813 CD44P16070 742 aaKnown RBP9.33□□□□□ -0.92
SFSWAP-211ENST00000542813 CREBZFQ9NS37 354 aa9.31□□□□□ -0.92
SFSWAP-211ENST00000542813 AMER1Q5JTC6 1135 aaPredicted RBP9.27□□□□□ -0.93
SFSWAP-211ENST00000542813 RTN4Q9NQC3 1192 aaKnown RBP9.27□□□□□ -0.93
SFSWAP-211ENST00000542813 CLCN6P51797 869 aa9.26□□□□□ -0.93
SFSWAP-211ENST00000542813 PROM2Q8N271 834 aa9.2□□□□□ -0.94
SFSWAP-211ENST00000542813 ZNF579Q8NAF0 562 aaKnown RBP9.2□□□□□ -0.94
SFSWAP-211ENST00000542813 ZRANB1Q9UGI0 708 aa9.2□□□□□ -0.94
SFSWAP-211ENST00000542813 NPM1P06748 294 aaKnown RBP eCLIP9.17□□□□□ -0.94
SFSWAP-211ENST00000542813 PAK3O75914 559 aaPredicted RBP9.15□□□□□ -0.94
SFSWAP-211ENST00000542813 MNX1P50219 401 aaPredicted RBP9.15□□□□□ -0.94
SFSWAP-211ENST00000542813 POTEIP0CG38 1075 aa9.14□□□□□ -0.95
SFSWAP-211ENST00000542813 DCBLD2Q96PD2 775 aa9.11□□□□□ -0.95
SFSWAP-211ENST00000542813 GALR2O43603 387 aaPredicted RBP9.07□□□□□ -0.96
SFSWAP-211ENST00000542813 PHF12Q96QT6 1004 aa9.05□□□□□ -0.96
SFSWAP-211ENST00000542813 PLEKHG5O94827 1062 aa9.02□□□□□ -0.97
SFSWAP-211ENST00000542813 MIER1Q8N108 512 aa8.99□□□□□ -0.97
SFSWAP-211ENST00000542813 TSPYL2Q9H2G4 693 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms