RNA–Protein interactions for RNA: ENST00000542381.1

SRGAP1-204, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 360 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-204ENST00000542381 AEBP2Q6ZN18 517 aaPredicted RBP35.24■■■■□ 3.23
SRGAP1-204ENST00000542381 CHIC1Q5VXU3 224 aa33.44■■■□□ 2.94
SRGAP1-204ENST00000542381 SENP3Q9H4L4 574 aaPredicted RBP29.95■■■□□ 2.39
SRGAP1-204ENST00000542381 PHF23Q9BUL5 403 aaPredicted RBP29.63■■■□□ 2.33
SRGAP1-204ENST00000542381 FOXD1Q16676 465 aa27.98■■■□□ 2.07
SRGAP1-204ENST00000542381 PLPPR3Q6T4P5 718 aa26.71■■□□□ 1.87
SRGAP1-204ENST00000542381 PPP6R1Q9UPN7 881 aa26.24■■□□□ 1.79
SRGAP1-204ENST00000542381 ADRA2BP18089 450 aa26.15■■□□□ 1.78
SRGAP1-204ENST00000542381 PIAS4Q8N2W9 510 aaPredicted RBP26.13■■□□□ 1.77
SRGAP1-204ENST00000542381 MSH5O43196 834 aa26.09■■□□□ 1.77
SRGAP1-204ENST00000542381 POTEDQ86YR6 584 aa25.47■■□□□ 1.67
SRGAP1-204ENST00000542381 MAPK8IP2Q13387 824 aaPredicted RBP24.03■■□□□ 1.44
SRGAP1-204ENST00000542381 SCAF1Q9H7N4 1312 aaKnown RBP23.82■■□□□ 1.4
SRGAP1-204ENST00000542381 DMRT2Q9Y5R5 561 aa23.78■■□□□ 1.4
SRGAP1-204ENST00000542381 PPP4R3CPQ6ZMV5 832 aa23.46■■□□□ 1.35
SRGAP1-204ENST00000542381 CNKSR2Q8WXI2 1034 aa22.97■■□□□ 1.27
SRGAP1-204ENST00000542381 HOXD11P31277 338 aaPredicted RBP22.92■■□□□ 1.26
SRGAP1-204ENST00000542381 DCAF8L1A6NGE4 600 aa22.84■■□□□ 1.25
SRGAP1-204ENST00000542381 RNF216Q9NWF9 866 aaPredicted RBP22.75■■□□□ 1.23
SRGAP1-204ENST00000542381 NCBP3Q53F19 620 aaKnown RBP22.51■■□□□ 1.19
SRGAP1-204ENST00000542381 CACNB1Q02641 598 aaPredicted RBP22.41■■□□□ 1.18
SRGAP1-204ENST00000542381 RNF39Q9H2S5 420 aa22.31■■□□□ 1.16
SRGAP1-204ENST00000542381 NPM3O75607 178 aaKnown RBP22.25■■□□□ 1.15
SRGAP1-204ENST00000542381 DNAJC5BQ9UF47 199 aa22.05■■□□□ 1.12
SRGAP1-204ENST00000542381 C1QBPQ07021 282 aaKnown RBP21.95■■□□□ 1.1
SRGAP1-204ENST00000542381 KCNA4P22459 653 aa21.89■■□□□ 1.09
SRGAP1-204ENST00000542381 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.85■■□□□ 1.09
SRGAP1-204ENST00000542381 U3KPZ7 1027 aaPredicted RBP21.42■■□□□ 1.02
SRGAP1-204ENST00000542381 SLC4A2P04920 1241 aa21.26■□□□□ 0.99
SRGAP1-204ENST00000542381 SPINK5Q9NQ38 1064 aaPredicted RBP21.12■□□□□ 0.97
SRGAP1-204ENST00000542381 CAPN15O75808 1086 aa21.05■□□□□ 0.96
SRGAP1-204ENST00000542381 DSG3P32926 999 aa20.92■□□□□ 0.94
SRGAP1-204ENST00000542381 TRHP20396 242 aaPredicted RBP20.74■□□□□ 0.91
SRGAP1-204ENST00000542381 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.72■□□□□ 0.91
SRGAP1-204ENST00000542381 HNRNPUL2Q1KMD3 747 aaKnown RBP20.72■□□□□ 0.91
SRGAP1-204ENST00000542381 APLP2Q06481 763 aa20.7■□□□□ 0.9
SRGAP1-204ENST00000542381 SAMD1Q6SPF0 538 aaPredicted RBP20.64■□□□□ 0.89
SRGAP1-204ENST00000542381 SLC4A1APQ9BWU0 796 aaKnown RBP20.63■□□□□ 0.89
SRGAP1-204ENST00000542381 ZNF219Q9P2Y4 722 aaPredicted RBP20.63■□□□□ 0.89
SRGAP1-204ENST00000542381 ABCB7O75027 752 aa20.6■□□□□ 0.89
SRGAP1-204ENST00000542381 MYCNP04198 464 aaPredicted RBP20.52■□□□□ 0.88
SRGAP1-204ENST00000542381 FOXD4L1Q9NU39 408 aa20.36■□□□□ 0.85
SRGAP1-204ENST00000542381 POLA2Q14181 598 aa20.19■□□□□ 0.82
SRGAP1-204ENST00000542381 ATF5Q9Y2D1 282 aaPredicted RBP20.16■□□□□ 0.82
SRGAP1-204ENST00000542381 ZBTB22O15209 634 aa20.15■□□□□ 0.82
SRGAP1-204ENST00000542381 POTEHQ6S545 545 aa19.95■□□□□ 0.78
SRGAP1-204ENST00000542381 RBM42Q9BTD8 480 aaKnown RBP19.88■□□□□ 0.77
SRGAP1-204ENST00000542381 ATXN8OSP0DMR3 200 aa19.69■□□□□ 0.74
SRGAP1-204ENST00000542381 ZBTB12Q9Y330 459 aaPredicted RBP19.68■□□□□ 0.74
SRGAP1-204ENST00000542381 OSCARQ8IYS5 282 aa19.54■□□□□ 0.72
SRGAP1-204ENST00000542381 CHRDL2Q6WN34 429 aa19.49■□□□□ 0.71
SRGAP1-204ENST00000542381 AKT1S1Q96B36 256 aa19.47■□□□□ 0.71
SRGAP1-204ENST00000542381 REM2Q8IYK8 340 aaPredicted RBP19.33■□□□□ 0.68
SRGAP1-204ENST00000542381 FBLN2P98095 1184 aa19.26■□□□□ 0.67
SRGAP1-204ENST00000542381 CSRNP3Q8WYN3 585 aa19.24■□□□□ 0.67
SRGAP1-204ENST00000542381 MKRN4PQ13434 485 aaPredicted RBP19.2■□□□□ 0.66
SRGAP1-204ENST00000542381 SPDYE2BA6NHP3 402 aa19.12■□□□□ 0.65
SRGAP1-204ENST00000542381 PITPNM1O00562 1244 aa19.12■□□□□ 0.65
SRGAP1-204ENST00000542381 SPDYE6P0CI01 402 aa19.12■□□□□ 0.65
SRGAP1-204ENST00000542381 SPDYE2Q495Y8 402 aa19.12■□□□□ 0.65
SRGAP1-204ENST00000542381 PIP4P2Q8N4L2 257 aa19.06■□□□□ 0.64
SRGAP1-204ENST00000542381 EHMT2Q96KQ7 1210 aa19.02■□□□□ 0.64
SRGAP1-204ENST00000542381 ZNF692Q9BU19 519 aaPredicted RBP18.94■□□□□ 0.62
SRGAP1-204ENST00000542381 FXR2P51116 673 aaKnown RBP eCLIP18.93■□□□□ 0.62
SRGAP1-204ENST00000542381 SSUH2Q9Y2M2 353 aa18.89■□□□□ 0.61
SRGAP1-204ENST00000542381 CLEC11AQ9Y240 323 aa18.8■□□□□ 0.6
SRGAP1-204ENST00000542381 SPDYE1Q8NFV5 336 aaPredicted RBP18.77■□□□□ 0.6
SRGAP1-204ENST00000542381 SP7Q8TDD2 431 aaPredicted RBP18.71■□□□□ 0.59
SRGAP1-204ENST00000542381 HAX1O00165 279 aa18.7■□□□□ 0.58
SRGAP1-204ENST00000542381 PABPN1Q86U42 306 aaKnown RBP eCLIP18.67■□□□□ 0.58
SRGAP1-204ENST00000542381 PRKAR2AP13861 404 aaKnown RBP18.62■□□□□ 0.57
SRGAP1-204ENST00000542381 EVX2Q03828 476 aa18.53■□□□□ 0.56
SRGAP1-204ENST00000542381 PRR29P0C7W0 189 aa18.47■□□□□ 0.55
SRGAP1-204ENST00000542381 CHADLQ6NUI6 762 aa18.47■□□□□ 0.55
SRGAP1-204ENST00000542381 C19orf67A6NJJ6 358 aa18.33■□□□□ 0.52
SRGAP1-204ENST00000542381 SPDYE4A6NLX3 237 aa18.28■□□□□ 0.52
SRGAP1-204ENST00000542381 FARP1Q9Y4F1 1045 aaPredicted RBP18.15■□□□□ 0.5
SRGAP1-204ENST00000542381 STAG3Q9UJ98 1225 aa18.1■□□□□ 0.49
SRGAP1-204ENST00000542381 GABBR2O75899 941 aa18.07■□□□□ 0.48
SRGAP1-204ENST00000542381 CREBZFQ9NS37 354 aa18.05■□□□□ 0.48
SRGAP1-204ENST00000542381 CD44P16070 742 aaKnown RBP18.03■□□□□ 0.48
SRGAP1-204ENST00000542381 PROM2Q8N271 834 aa17.84■□□□□ 0.45
SRGAP1-204ENST00000542381 ZRANB1Q9UGI0 708 aa17.79■□□□□ 0.44
SRGAP1-204ENST00000542381 MNX1P50219 401 aaPredicted RBP17.75■□□□□ 0.43
SRGAP1-204ENST00000542381 ZNF579Q8NAF0 562 aaKnown RBP17.73■□□□□ 0.43
SRGAP1-204ENST00000542381 POTEIP0CG38 1075 aa17.71■□□□□ 0.43
SRGAP1-204ENST00000542381 CLCN6P51797 869 aa17.68■□□□□ 0.42
SRGAP1-204ENST00000542381 NPM1P06748 294 aaKnown RBP eCLIP17.66■□□□□ 0.42
SRGAP1-204ENST00000542381 PAK3O75914 559 aaPredicted RBP17.59■□□□□ 0.41
SRGAP1-204ENST00000542381 PHF12Q96QT6 1004 aa17.57■□□□□ 0.4
SRGAP1-204ENST00000542381 GALR2O43603 387 aaPredicted RBP17.56■□□□□ 0.4
SRGAP1-204ENST00000542381 LHX8Q68G74 356 aa17.56■□□□□ 0.4
SRGAP1-204ENST00000542381 DCBLD2Q96PD2 775 aa17.56■□□□□ 0.4
SRGAP1-204ENST00000542381 MIER1Q8N108 512 aa17.44■□□□□ 0.38
SRGAP1-204ENST00000542381 FKBP8Q14318 412 aa17.43■□□□□ 0.38
SRGAP1-204ENST00000542381 TSPYL2Q9H2G4 693 aaPredicted RBP17.41■□□□□ 0.38
SRGAP1-204ENST00000542381 PLEKHG5O94827 1062 aa17.34■□□□□ 0.37
SRGAP1-204ENST00000542381 MS4A3Q96HJ5 214 aa17.33■□□□□ 0.36
SRGAP1-204ENST00000542381 CCDC61Q9Y6R9 512 aa17.31■□□□□ 0.36
SRGAP1-204ENST00000542381 PLCD3Q8N3E9 789 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms