RNA–Protein interactions for RNA: ENST00000541841.1

CIT-211, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-211ENST00000541841 AEBP2Q6ZN18 517 aaPredicted RBP29.9■■■□□ 2.38
CIT-211ENST00000541841 CHIC1Q5VXU3 224 aa28.67■■■□□ 2.18
CIT-211ENST00000541841 SENP3Q9H4L4 574 aaPredicted RBP25.3■■□□□ 1.64
CIT-211ENST00000541841 PHF23Q9BUL5 403 aaPredicted RBP25.26■■□□□ 1.63
CIT-211ENST00000541841 FOXD1Q16676 465 aa23.64■■□□□ 1.37
CIT-211ENST00000541841 PLPPR3Q6T4P5 718 aa23.04■■□□□ 1.28
CIT-211ENST00000541841 PPP6R1Q9UPN7 881 aa22.46■■□□□ 1.19
CIT-211ENST00000541841 ADRA2BP18089 450 aa22.42■■□□□ 1.18
CIT-211ENST00000541841 PIAS4Q8N2W9 510 aaPredicted RBP22.18■■□□□ 1.14
CIT-211ENST00000541841 MSH5O43196 834 aa21.84■■□□□ 1.09
CIT-211ENST00000541841 POTEDQ86YR6 584 aa20.79■□□□□ 0.92
CIT-211ENST00000541841 MAPK8IP2Q13387 824 aaPredicted RBP20.5■□□□□ 0.87
CIT-211ENST00000541841 PPP4R3CPQ6ZMV5 832 aa20.31■□□□□ 0.84
CIT-211ENST00000541841 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
CIT-211ENST00000541841 DMRT2Q9Y5R5 561 aa20.15■□□□□ 0.82
CIT-211ENST00000541841 CNKSR2Q8WXI2 1034 aa19.77■□□□□ 0.76
CIT-211ENST00000541841 NCBP3Q53F19 620 aaKnown RBP19.55■□□□□ 0.72
CIT-211ENST00000541841 HOXD11P31277 338 aaPredicted RBP19.53■□□□□ 0.72
CIT-211ENST00000541841 RNF216Q9NWF9 866 aaPredicted RBP19.48■□□□□ 0.71
CIT-211ENST00000541841 DCAF8L1A6NGE4 600 aa19.42■□□□□ 0.7
CIT-211ENST00000541841 KCNA4P22459 653 aa19.41■□□□□ 0.7
CIT-211ENST00000541841 NPM3O75607 178 aaKnown RBP19.38■□□□□ 0.69
CIT-211ENST00000541841 RNF39Q9H2S5 420 aa18.73■□□□□ 0.59
CIT-211ENST00000541841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.68■□□□□ 0.58
CIT-211ENST00000541841 DNAJC5BQ9UF47 199 aa18.67■□□□□ 0.58
CIT-211ENST00000541841 CACNB1Q02641 598 aaPredicted RBP18.6■□□□□ 0.57
CIT-211ENST00000541841 SLC4A2P04920 1241 aa18.43■□□□□ 0.54
CIT-211ENST00000541841 C1QBPQ07021 282 aaKnown RBP18.42■□□□□ 0.54
CIT-211ENST00000541841 U3KPZ7 1027 aaPredicted RBP18.35■□□□□ 0.53
CIT-211ENST00000541841 SLC4A1APQ9BWU0 796 aaKnown RBP18.34■□□□□ 0.53
CIT-211ENST00000541841 SPINK5Q9NQ38 1064 aaPredicted RBP18.02■□□□□ 0.48
CIT-211ENST00000541841 CAPN15O75808 1086 aa17.93■□□□□ 0.46
CIT-211ENST00000541841 FOXD4L1Q9NU39 408 aa17.9■□□□□ 0.46
CIT-211ENST00000541841 ZBTB22O15209 634 aa17.89■□□□□ 0.45
CIT-211ENST00000541841 MYCNP04198 464 aaPredicted RBP17.85■□□□□ 0.45
CIT-211ENST00000541841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.8■□□□□ 0.44
CIT-211ENST00000541841 HNRNPUL2Q1KMD3 747 aaKnown RBP17.8■□□□□ 0.44
CIT-211ENST00000541841 SAMD1Q6SPF0 538 aaPredicted RBP17.77■□□□□ 0.44
CIT-211ENST00000541841 TRHP20396 242 aaPredicted RBP17.76■□□□□ 0.43
CIT-211ENST00000541841 DSG3P32926 999 aa17.71■□□□□ 0.43
CIT-211ENST00000541841 APLP2Q06481 763 aa17.68■□□□□ 0.42
CIT-211ENST00000541841 ABCB7O75027 752 aa17.62■□□□□ 0.41
CIT-211ENST00000541841 ZNF219Q9P2Y4 722 aaPredicted RBP17.61■□□□□ 0.41
CIT-211ENST00000541841 ATF5Q9Y2D1 282 aaPredicted RBP17.56■□□□□ 0.4
CIT-211ENST00000541841 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
CIT-211ENST00000541841 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
CIT-211ENST00000541841 POLA2Q14181 598 aa17.33■□□□□ 0.36
CIT-211ENST00000541841 ATXN8OSP0DMR3 200 aa17.2■□□□□ 0.34
CIT-211ENST00000541841 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
CIT-211ENST00000541841 OSCARQ8IYS5 282 aa16.81■□□□□ 0.28
CIT-211ENST00000541841 RBM42Q9BTD8 480 aaKnown RBP16.76■□□□□ 0.27
CIT-211ENST00000541841 MKRN4PQ13434 485 aaPredicted RBP16.73■□□□□ 0.27
CIT-211ENST00000541841 FBLN2P98095 1184 aa16.69■□□□□ 0.26
CIT-211ENST00000541841 AKT1S1Q96B36 256 aa16.51■□□□□ 0.23
CIT-211ENST00000541841 SPDYE2BA6NHP3 402 aa16.43■□□□□ 0.22
CIT-211ENST00000541841 SPDYE6P0CI01 402 aa16.43■□□□□ 0.22
CIT-211ENST00000541841 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
CIT-211ENST00000541841 REM2Q8IYK8 340 aaPredicted RBP16.42■□□□□ 0.22
CIT-211ENST00000541841 ZNF692Q9BU19 519 aaPredicted RBP16.36■□□□□ 0.21
CIT-211ENST00000541841 POTEHQ6S545 545 aa16.35■□□□□ 0.21
CIT-211ENST00000541841 CHRDL2Q6WN34 429 aa16.35■□□□□ 0.21
CIT-211ENST00000541841 SSUH2Q9Y2M2 353 aa16.29■□□□□ 0.2
CIT-211ENST00000541841 PITPNM1O00562 1244 aa16.27■□□□□ 0.2
CIT-211ENST00000541841 PABPN1Q86U42 306 aaKnown RBP eCLIP16.16■□□□□ 0.18
CIT-211ENST00000541841 CLEC11AQ9Y240 323 aa16.13■□□□□ 0.17
CIT-211ENST00000541841 SPDYE4A6NLX3 237 aa16.09■□□□□ 0.17
CIT-211ENST00000541841 PIP4P2Q8N4L2 257 aa16.08■□□□□ 0.16
CIT-211ENST00000541841 SPDYE1Q8NFV5 336 aaPredicted RBP16.07■□□□□ 0.16
CIT-211ENST00000541841 FXR2P51116 673 aaKnown RBP eCLIP15.99■□□□□ 0.15
CIT-211ENST00000541841 PRR29P0C7W0 189 aa15.85■□□□□ 0.13
CIT-211ENST00000541841 PRKAR2AP13861 404 aaKnown RBP15.84■□□□□ 0.13
CIT-211ENST00000541841 CHADLQ6NUI6 762 aa15.82■□□□□ 0.12
CIT-211ENST00000541841 FKBP8Q14318 412 aa15.74■□□□□ 0.11
CIT-211ENST00000541841 PROM2Q8N271 834 aa15.7■□□□□ 0.1
CIT-211ENST00000541841 HAX1O00165 279 aa15.67■□□□□ 0.1
CIT-211ENST00000541841 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
CIT-211ENST00000541841 EVX2Q03828 476 aa15.59■□□□□ 0.09
CIT-211ENST00000541841 CREBZFQ9NS37 354 aa15.59■□□□□ 0.09
CIT-211ENST00000541841 FARP1Q9Y4F1 1045 aaPredicted RBP15.53■□□□□ 0.08
CIT-211ENST00000541841 SP7Q8TDD2 431 aaPredicted RBP15.49■□□□□ 0.07
CIT-211ENST00000541841 C19orf67A6NJJ6 358 aa15.47■□□□□ 0.07
CIT-211ENST00000541841 CD44P16070 742 aaKnown RBP15.36■□□□□ 0.05
CIT-211ENST00000541841 MNX1P50219 401 aaPredicted RBP15.36■□□□□ 0.05
CIT-211ENST00000541841 MIER1Q8N108 512 aa15.31■□□□□ 0.04
CIT-211ENST00000541841 PLCD3Q8N3E9 789 aa15.23■□□□□ 0.03
CIT-211ENST00000541841 ZRANB1Q9UGI0 708 aa15.22■□□□□ 0.03
CIT-211ENST00000541841 NPM1P06748 294 aaKnown RBP eCLIP15.21■□□□□ 0.03
CIT-211ENST00000541841 GABBR2O75899 941 aa15.18■□□□□ 0.02
CIT-211ENST00000541841 PLEKHG5O94827 1062 aa15.16■□□□□ 0.02
CIT-211ENST00000541841 FBXO3Q9UK99 471 aa15.14■□□□□ 0.01
CIT-211ENST00000541841 ZNF579Q8NAF0 562 aaKnown RBP15.09■□□□□ 0.01
CIT-211ENST00000541841 TSPYL2Q9H2G4 693 aaPredicted RBP15.09■□□□□ 0.01
CIT-211ENST00000541841 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
CIT-211ENST00000541841 PHF12Q96QT6 1004 aa15.08■□□□□ 0
CIT-211ENST00000541841 VASPP50552 380 aaPredicted RBP15.05■□□□□ -0
CIT-211ENST00000541841 RASEFQ8IZ41 740 aa15.04■□□□□ -0
CIT-211ENST00000541841 GALR2O43603 387 aaPredicted RBP14.98□□□□□ -0.01
CIT-211ENST00000541841 NUBP1P53384 320 aa14.96□□□□□ -0.01
CIT-211ENST00000541841 ZBTB47Q9UFB7 747 aaPredicted RBP14.96□□□□□ -0.01
CIT-211ENST00000541841 CCDC61Q9Y6R9 512 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms