RNA–Protein interactions for RNA: ENST00000541427.1

KNTC1-211, Transcript of kinetochore associated 1, humanhuman

TSL 2

Gene KNTC1, Length 641 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNTC1-211ENST00000541427 AEBP2Q6ZN18 517 aaPredicted RBP26.83■■□□□ 1.89
KNTC1-211ENST00000541427 CHIC1Q5VXU3 224 aa25.15■■□□□ 1.62
KNTC1-211ENST00000541427 SENP3Q9H4L4 574 aaPredicted RBP22.94■■□□□ 1.26
KNTC1-211ENST00000541427 PHF23Q9BUL5 403 aaPredicted RBP22.6■■□□□ 1.21
KNTC1-211ENST00000541427 FOXD1Q16676 465 aa21.42■■□□□ 1.02
KNTC1-211ENST00000541427 POTEDQ86YR6 584 aa20.26■□□□□ 0.83
KNTC1-211ENST00000541427 MSH5O43196 834 aa20.17■□□□□ 0.82
KNTC1-211ENST00000541427 PIAS4Q8N2W9 510 aaPredicted RBP19.95■□□□□ 0.78
KNTC1-211ENST00000541427 PLPPR3Q6T4P5 718 aa19.94■□□□□ 0.78
KNTC1-211ENST00000541427 PPP6R1Q9UPN7 881 aa19.78■□□□□ 0.76
KNTC1-211ENST00000541427 ADRA2BP18089 450 aa19.71■□□□□ 0.75
KNTC1-211ENST00000541427 MAPK8IP2Q13387 824 aaPredicted RBP18.2■□□□□ 0.5
KNTC1-211ENST00000541427 DMRT2Q9Y5R5 561 aa18.13■□□□□ 0.49
KNTC1-211ENST00000541427 SCAF1Q9H7N4 1312 aaKnown RBP18.02■□□□□ 0.48
KNTC1-211ENST00000541427 CACNB1Q02641 598 aaPredicted RBP17.53■□□□□ 0.4
KNTC1-211ENST00000541427 PPP4R3CPQ6ZMV5 832 aa17.45■□□□□ 0.38
KNTC1-211ENST00000541427 DCAF8L1A6NGE4 600 aa17.44■□□□□ 0.38
KNTC1-211ENST00000541427 HOXD11P31277 338 aaPredicted RBP17.33■□□□□ 0.36
KNTC1-211ENST00000541427 CNKSR2Q8WXI2 1034 aa17.19■□□□□ 0.34
KNTC1-211ENST00000541427 RNF39Q9H2S5 420 aa17.18■□□□□ 0.34
KNTC1-211ENST00000541427 RNF216Q9NWF9 866 aaPredicted RBP17.11■□□□□ 0.33
KNTC1-211ENST00000541427 C1QBPQ07021 282 aaKnown RBP16.91■□□□□ 0.3
KNTC1-211ENST00000541427 DNAJC5BQ9UF47 199 aa16.78■□□□□ 0.28
KNTC1-211ENST00000541427 NCBP3Q53F19 620 aaKnown RBP16.67■□□□□ 0.26
KNTC1-211ENST00000541427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.54■□□□□ 0.24
KNTC1-211ENST00000541427 NPM3O75607 178 aaKnown RBP16.43■□□□□ 0.22
KNTC1-211ENST00000541427 U3KPZ7 1027 aaPredicted RBP16.14■□□□□ 0.17
KNTC1-211ENST00000541427 SPINK5Q9NQ38 1064 aaPredicted RBP16.02■□□□□ 0.16
KNTC1-211ENST00000541427 CAPN15O75808 1086 aa16.01■□□□□ 0.15
KNTC1-211ENST00000541427 DSG3P32926 999 aa15.98■□□□□ 0.15
KNTC1-211ENST00000541427 KCNA4P22459 653 aa15.84■□□□□ 0.13
KNTC1-211ENST00000541427 POTEHQ6S545 545 aa15.81■□□□□ 0.12
KNTC1-211ENST00000541427 SLC4A2P04920 1241 aa15.78■□□□□ 0.12
KNTC1-211ENST00000541427 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
KNTC1-211ENST00000541427 APLP2Q06481 763 aa15.64■□□□□ 0.09
KNTC1-211ENST00000541427 ABCB7O75027 752 aa15.62■□□□□ 0.09
KNTC1-211ENST00000541427 ZNF219Q9P2Y4 722 aaPredicted RBP15.61■□□□□ 0.09
KNTC1-211ENST00000541427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.56■□□□□ 0.08
KNTC1-211ENST00000541427 HNRNPUL2Q1KMD3 747 aaKnown RBP15.56■□□□□ 0.08
KNTC1-211ENST00000541427 SAMD1Q6SPF0 538 aaPredicted RBP15.46■□□□□ 0.07
KNTC1-211ENST00000541427 RBM42Q9BTD8 480 aaKnown RBP15.25■□□□□ 0.03
KNTC1-211ENST00000541427 MYCNP04198 464 aaPredicted RBP15.2■□□□□ 0.02
KNTC1-211ENST00000541427 POLA2Q14181 598 aa15.18■□□□□ 0.02
KNTC1-211ENST00000541427 CHRDL2Q6WN34 429 aa15.07■□□□□ 0
KNTC1-211ENST00000541427 ATF5Q9Y2D1 282 aaPredicted RBP14.89□□□□□ -0.03
KNTC1-211ENST00000541427 SLC4A1APQ9BWU0 796 aaKnown RBP14.88□□□□□ -0.03
KNTC1-211ENST00000541427 FOXD4L1Q9NU39 408 aa14.87□□□□□ -0.03
KNTC1-211ENST00000541427 AKT1S1Q96B36 256 aa14.83□□□□□ -0.04
KNTC1-211ENST00000541427 ZBTB12Q9Y330 459 aaPredicted RBP14.82□□□□□ -0.04
KNTC1-211ENST00000541427 OSCARQ8IYS5 282 aa14.71□□□□□ -0.05
KNTC1-211ENST00000541427 REM2Q8IYK8 340 aaPredicted RBP14.7□□□□□ -0.06
KNTC1-211ENST00000541427 SP7Q8TDD2 431 aaPredicted RBP14.67□□□□□ -0.06
KNTC1-211ENST00000541427 PIP4P2Q8N4L2 257 aa14.63□□□□□ -0.07
KNTC1-211ENST00000541427 PITPNM1O00562 1244 aa14.55□□□□□ -0.08
KNTC1-211ENST00000541427 ZBTB22O15209 634 aa14.55□□□□□ -0.08
KNTC1-211ENST00000541427 HAX1O00165 279 aa14.48□□□□□ -0.09
KNTC1-211ENST00000541427 FXR2P51116 673 aaKnown RBP eCLIP14.48□□□□□ -0.09
KNTC1-211ENST00000541427 ATXN8OSP0DMR3 200 aa14.43□□□□□ -0.1
KNTC1-211ENST00000541427 SPDYE2BA6NHP3 402 aa14.35□□□□□ -0.11
KNTC1-211ENST00000541427 SPDYE6P0CI01 402 aa14.35□□□□□ -0.11
KNTC1-211ENST00000541427 SPDYE2Q495Y8 402 aa14.35□□□□□ -0.11
KNTC1-211ENST00000541427 FBLN2P98095 1184 aa14.33□□□□□ -0.12
KNTC1-211ENST00000541427 EVX2Q03828 476 aa14.26□□□□□ -0.13
KNTC1-211ENST00000541427 CLEC11AQ9Y240 323 aa14.19□□□□□ -0.14
KNTC1-211ENST00000541427 PRKAR2AP13861 404 aaKnown RBP14.18□□□□□ -0.14
KNTC1-211ENST00000541427 MKRN4PQ13434 485 aaPredicted RBP14.18□□□□□ -0.14
KNTC1-211ENST00000541427 SPDYE1Q8NFV5 336 aaPredicted RBP14.18□□□□□ -0.14
KNTC1-211ENST00000541427 ZNF692Q9BU19 519 aaPredicted RBP14.13□□□□□ -0.15
KNTC1-211ENST00000541427 SSUH2Q9Y2M2 353 aa14.11□□□□□ -0.15
KNTC1-211ENST00000541427 C19orf67A6NJJ6 358 aa14.03□□□□□ -0.16
KNTC1-211ENST00000541427 CHADLQ6NUI6 762 aa13.95□□□□□ -0.18
KNTC1-211ENST00000541427 GABBR2O75899 941 aa13.91□□□□□ -0.18
KNTC1-211ENST00000541427 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.184e-7■■■■□ 21.5
KNTC1-211ENST00000541427 PRR29P0C7W0 189 aa13.9□□□□□ -0.18
KNTC1-211ENST00000541427 LHX8Q68G74 356 aa13.76□□□□□ -0.21
KNTC1-211ENST00000541427 CD44P16070 742 aaKnown RBP13.71□□□□□ -0.21
KNTC1-211ENST00000541427 FARP1Q9Y4F1 1045 aaPredicted RBP13.71□□□□□ -0.21
KNTC1-211ENST00000541427 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
KNTC1-211ENST00000541427 POTEIP0CG38 1075 aa13.61□□□□□ -0.23
KNTC1-211ENST00000541427 CSRNP3Q8WYN3 585 aa13.57□□□□□ -0.24
KNTC1-211ENST00000541427 CLCN6P51797 869 aa13.56□□□□□ -0.24
KNTC1-211ENST00000541427 DCBLD2Q96PD2 775 aa13.48□□□□□ -0.25
KNTC1-211ENST00000541427 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
KNTC1-211ENST00000541427 ZRANB1Q9UGI0 708 aa13.47□□□□□ -0.25
KNTC1-211ENST00000541427 CREBZFQ9NS37 354 aa13.46□□□□□ -0.25
KNTC1-211ENST00000541427 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
KNTC1-211ENST00000541427 SPDYE4A6NLX3 237 aa13.35□□□□□ -0.27
KNTC1-211ENST00000541427 GALR2O43603 387 aaPredicted RBP13.34□□□□□ -0.27
KNTC1-211ENST00000541427 PAK3O75914 559 aaPredicted RBP13.28□□□□□ -0.28
KNTC1-211ENST00000541427 PHF12Q96QT6 1004 aa13.25□□□□□ -0.29
KNTC1-211ENST00000541427 NPM1P06748 294 aaKnown RBP eCLIP13.21□□□□□ -0.29
KNTC1-211ENST00000541427 MNX1P50219 401 aaPredicted RBP13.19□□□□□ -0.3
KNTC1-211ENST00000541427 OTUD5Q96G74 571 aa13.18□□□□□ -0.3
KNTC1-211ENST00000541427 POTEB2H3BUK9 544 aa13.17□□□□□ -0.3
KNTC1-211ENST00000541427 PLSCR2Q9NRY7 297 aa13.17□□□□□ -0.3
KNTC1-211ENST00000541427 PELP1Q8IZL8 1130 aaKnown RBP13.11□□□□□ -0.31
KNTC1-211ENST00000541427 MS4A3Q96HJ5 214 aa13.05□□□□□ -0.32
KNTC1-211ENST00000541427 ASTLQ6HA08 431 aaPredicted RBP13.03□□□□□ -0.32
KNTC1-211ENST00000541427 METRNQ9UJH8 293 aa13.01□□□□□ -0.33
KNTC1-211ENST00000541427 ATMINO43313 823 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms