RNA–Protein interactions for RNA: ENST00000541168.1

SMCO2-205, Transcript of single-pass membrane protein with coiled-coil domains 2, humanhuman

TSL 3

Gene SMCO2, Length 922 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO2-205ENST00000541168 AEBP2Q6ZN18 517 aaPredicted RBP38.03■■■■□ 3.68
SMCO2-205ENST00000541168 CHIC1Q5VXU3 224 aa36.1■■■■□ 3.37
SMCO2-205ENST00000541168 SENP3Q9H4L4 574 aaPredicted RBP32.48■■■□□ 2.79
SMCO2-205ENST00000541168 PHF23Q9BUL5 403 aaPredicted RBP32.02■■■□□ 2.72
SMCO2-205ENST00000541168 FOXD1Q16676 465 aa30.25■■■□□ 2.43
SMCO2-205ENST00000541168 PLPPR3Q6T4P5 718 aa28.84■■■□□ 2.21
SMCO2-205ENST00000541168 MSH5O43196 834 aa28.34■■■□□ 2.13
SMCO2-205ENST00000541168 PIAS4Q8N2W9 510 aaPredicted RBP28.29■■■□□ 2.12
SMCO2-205ENST00000541168 PPP6R1Q9UPN7 881 aa28.24■■■□□ 2.11
SMCO2-205ENST00000541168 ADRA2BP18089 450 aa28.17■■■□□ 2.1
SMCO2-205ENST00000541168 POTEDQ86YR6 584 aa27.7■■■□□ 2.02
SMCO2-205ENST00000541168 MAPK8IP2Q13387 824 aaPredicted RBP25.86■■□□□ 1.73
SMCO2-205ENST00000541168 SCAF1Q9H7N4 1312 aaKnown RBP25.78■■□□□ 1.72
SMCO2-205ENST00000541168 DMRT2Q9Y5R5 561 aa25.74■■□□□ 1.71
SMCO2-205ENST00000541168 PPP4R3CPQ6ZMV5 832 aa25.26■■□□□ 1.63
SMCO2-205ENST00000541168 CNKSR2Q8WXI2 1034 aa24.8■■□□□ 1.56
SMCO2-205ENST00000541168 HOXD11P31277 338 aaPredicted RBP24.77■■□□□ 1.56
SMCO2-205ENST00000541168 DCAF8L1A6NGE4 600 aa24.71■■□□□ 1.55
SMCO2-205ENST00000541168 RNF216Q9NWF9 866 aaPredicted RBP24.58■■□□□ 1.53
SMCO2-205ENST00000541168 CACNB1Q02641 598 aaPredicted RBP24.34■■□□□ 1.49
SMCO2-205ENST00000541168 NCBP3Q53F19 620 aaKnown RBP24.3■■□□□ 1.48
SMCO2-205ENST00000541168 RNF39Q9H2S5 420 aa24.17■■□□□ 1.46
SMCO2-205ENST00000541168 NPM3O75607 178 aaKnown RBP23.94■■□□□ 1.42
SMCO2-205ENST00000541168 DNAJC5BQ9UF47 199 aa23.92■■□□□ 1.42
SMCO2-205ENST00000541168 C1QBPQ07021 282 aaKnown RBP23.82■■□□□ 1.4
SMCO2-205ENST00000541168 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.62■■□□□ 1.37
SMCO2-205ENST00000541168 KCNA4P22459 653 aa23.46■■□□□ 1.35
SMCO2-205ENST00000541168 U3KPZ7 1027 aaPredicted RBP23.12■■□□□ 1.29
SMCO2-205ENST00000541168 SLC4A2P04920 1241 aa22.86■■□□□ 1.25
SMCO2-205ENST00000541168 SPINK5Q9NQ38 1064 aaPredicted RBP22.79■■□□□ 1.24
SMCO2-205ENST00000541168 CAPN15O75808 1086 aa22.77■■□□□ 1.24
SMCO2-205ENST00000541168 DSG3P32926 999 aa22.62■■□□□ 1.21
SMCO2-205ENST00000541168 APLP2Q06481 763 aa22.49■■□□□ 1.19
SMCO2-205ENST00000541168 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.46■■□□□ 1.19
SMCO2-205ENST00000541168 HNRNPUL2Q1KMD3 747 aaKnown RBP22.46■■□□□ 1.19
SMCO2-205ENST00000541168 TRHP20396 242 aaPredicted RBP22.39■■□□□ 1.17
SMCO2-205ENST00000541168 ZNF219Q9P2Y4 722 aaPredicted RBP22.36■■□□□ 1.17
SMCO2-205ENST00000541168 SAMD1Q6SPF0 538 aaPredicted RBP22.34■■□□□ 1.17
SMCO2-205ENST00000541168 ABCB7O75027 752 aa22.24■■□□□ 1.15
SMCO2-205ENST00000541168 MYCNP04198 464 aaPredicted RBP22.16■■□□□ 1.14
SMCO2-205ENST00000541168 SLC4A1APQ9BWU0 796 aaKnown RBP22.15■■□□□ 1.14
SMCO2-205ENST00000541168 FOXD4L1Q9NU39 408 aa21.92■■□□□ 1.1
SMCO2-205ENST00000541168 POLA2Q14181 598 aa21.76■■□□□ 1.07
SMCO2-205ENST00000541168 POTEHQ6S545 545 aa21.71■■□□□ 1.07
SMCO2-205ENST00000541168 RBM42Q9BTD8 480 aaKnown RBP21.62■■□□□ 1.05
SMCO2-205ENST00000541168 ATF5Q9Y2D1 282 aaPredicted RBP21.62■■□□□ 1.05
SMCO2-205ENST00000541168 ZBTB22O15209 634 aa21.56■■□□□ 1.04
SMCO2-205ENST00000541168 ZBTB12Q9Y330 459 aaPredicted RBP21.35■■□□□ 1.01
SMCO2-205ENST00000541168 ATXN8OSP0DMR3 200 aa21.23■□□□□ 0.99
SMCO2-205ENST00000541168 CHRDL2Q6WN34 429 aa21.14■□□□□ 0.97
SMCO2-205ENST00000541168 OSCARQ8IYS5 282 aa21.11■□□□□ 0.97
SMCO2-205ENST00000541168 AKT1S1Q96B36 256 aa21.1■□□□□ 0.97
SMCO2-205ENST00000541168 REM2Q8IYK8 340 aaPredicted RBP20.89■□□□□ 0.93
SMCO2-205ENST00000541168 FBLN2P98095 1184 aa20.82■□□□□ 0.92
SMCO2-205ENST00000541168 SPDYE2BA6NHP3 402 aa20.69■□□□□ 0.9
SMCO2-205ENST00000541168 SPDYE6P0CI01 402 aa20.69■□□□□ 0.9
SMCO2-205ENST00000541168 SPDYE2Q495Y8 402 aa20.69■□□□□ 0.9
SMCO2-205ENST00000541168 PITPNM1O00562 1244 aa20.68■□□□□ 0.9
SMCO2-205ENST00000541168 MKRN4PQ13434 485 aaPredicted RBP20.63■□□□□ 0.89
SMCO2-205ENST00000541168 PIP4P2Q8N4L2 257 aa20.62■□□□□ 0.89
SMCO2-205ENST00000541168 CSRNP3Q8WYN3 585 aa20.53■□□□□ 0.88
SMCO2-205ENST00000541168 FXR2P51116 673 aaKnown RBP eCLIP20.49■□□□□ 0.87
SMCO2-205ENST00000541168 ZNF692Q9BU19 519 aaPredicted RBP20.41■□□□□ 0.86
SMCO2-205ENST00000541168 SSUH2Q9Y2M2 353 aa20.4■□□□□ 0.86
SMCO2-205ENST00000541168 SPDYE1Q8NFV5 336 aaPredicted RBP20.34■□□□□ 0.85
SMCO2-205ENST00000541168 SP7Q8TDD2 431 aaPredicted RBP20.34■□□□□ 0.85
SMCO2-205ENST00000541168 CLEC11AQ9Y240 323 aa20.3■□□□□ 0.84
SMCO2-205ENST00000541168 EHMT2Q96KQ7 1210 aa20.28■□□□□ 0.84
SMCO2-205ENST00000541168 HAX1O00165 279 aa20.26■□□□□ 0.83
SMCO2-205ENST00000541168 PRKAR2AP13861 404 aaKnown RBP20.14■□□□□ 0.81
SMCO2-205ENST00000541168 PABPN1Q86U42 306 aaKnown RBP eCLIP20.12■□□□□ 0.81
SMCO2-205ENST00000541168 EVX2Q03828 476 aa19.98■□□□□ 0.79
SMCO2-205ENST00000541168 PRR29P0C7W0 189 aa19.95■□□□□ 0.78
SMCO2-205ENST00000541168 CHADLQ6NUI6 762 aa19.9■□□□□ 0.78
SMCO2-205ENST00000541168 C19orf67A6NJJ6 358 aa19.84■□□□□ 0.77
SMCO2-205ENST00000541168 SPDYE4A6NLX3 237 aa19.66■□□□□ 0.74
SMCO2-205ENST00000541168 FARP1Q9Y4F1 1045 aaPredicted RBP19.61■□□□□ 0.73
SMCO2-205ENST00000541168 STAG3Q9UJ98 1225 aa19.57■□□□□ 0.72
SMCO2-205ENST00000541168 GABBR2O75899 941 aa19.55■□□□□ 0.72
SMCO2-205ENST00000541168 CD44P16070 742 aaKnown RBP19.51■□□□□ 0.71
SMCO2-205ENST00000541168 CREBZFQ9NS37 354 aa19.44■□□□□ 0.7
SMCO2-205ENST00000541168 CLCN6P51797 869 aa19.23■□□□□ 0.67
SMCO2-205ENST00000541168 ZRANB1Q9UGI0 708 aa19.23■□□□□ 0.67
SMCO2-205ENST00000541168 ZNF579Q8NAF0 562 aaKnown RBP19.21■□□□□ 0.67
SMCO2-205ENST00000541168 PROM2Q8N271 834 aa19.17■□□□□ 0.66
SMCO2-205ENST00000541168 POTEIP0CG38 1075 aa19.12■□□□□ 0.65
SMCO2-205ENST00000541168 NPM1P06748 294 aaKnown RBP eCLIP19.1■□□□□ 0.65
SMCO2-205ENST00000541168 MNX1P50219 401 aaPredicted RBP19.09■□□□□ 0.65
SMCO2-205ENST00000541168 PAK3O75914 559 aaPredicted RBP19.08■□□□□ 0.64
SMCO2-205ENST00000541168 LHX8Q68G74 356 aa19.07■□□□□ 0.64
SMCO2-205ENST00000541168 DCBLD2Q96PD2 775 aa19.03■□□□□ 0.64
SMCO2-205ENST00000541168 GALR2O43603 387 aaPredicted RBP18.97■□□□□ 0.63
SMCO2-205ENST00000541168 PHF12Q96QT6 1004 aa18.97■□□□□ 0.63
SMCO2-205ENST00000541168 PLEKHG5O94827 1062 aa18.76■□□□□ 0.59
SMCO2-205ENST00000541168 MIER1Q8N108 512 aa18.75■□□□□ 0.59
SMCO2-205ENST00000541168 TSPYL2Q9H2G4 693 aaPredicted RBP18.75■□□□□ 0.59
SMCO2-205ENST00000541168 MS4A3Q96HJ5 214 aa18.72■□□□□ 0.59
SMCO2-205ENST00000541168 CCDC61Q9Y6R9 512 aa18.66■□□□□ 0.58
SMCO2-205ENST00000541168 FKBP8Q14318 412 aa18.65■□□□□ 0.58
SMCO2-205ENST00000541168 PLCD3Q8N3E9 789 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms