RNA–Protein interactions for RNA: ENST00000539369.1

LDHC-206, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 881 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-206ENST00000539369 AEBP2Q6ZN18 517 aaPredicted RBP28.05■■■□□ 2.08
LDHC-206ENST00000539369 CHIC1Q5VXU3 224 aa26.17■■□□□ 1.78
LDHC-206ENST00000539369 SENP3Q9H4L4 574 aaPredicted RBP23.85■■□□□ 1.41
LDHC-206ENST00000539369 PHF23Q9BUL5 403 aaPredicted RBP23.54■■□□□ 1.36
LDHC-206ENST00000539369 FOXD1Q16676 465 aa22.37■■□□□ 1.17
LDHC-206ENST00000539369 POTEDQ86YR6 584 aa21.24■□□□□ 0.99
LDHC-206ENST00000539369 MSH5O43196 834 aa20.97■□□□□ 0.95
LDHC-206ENST00000539369 PIAS4Q8N2W9 510 aaPredicted RBP20.74■□□□□ 0.91
LDHC-206ENST00000539369 PLPPR3Q6T4P5 718 aa20.67■□□□□ 0.9
LDHC-206ENST00000539369 PPP6R1Q9UPN7 881 aa20.66■□□□□ 0.9
LDHC-206ENST00000539369 ADRA2BP18089 450 aa20.53■□□□□ 0.88
LDHC-206ENST00000539369 MAPK8IP2Q13387 824 aaPredicted RBP19■□□□□ 0.63
LDHC-206ENST00000539369 DMRT2Q9Y5R5 561 aa18.89■□□□□ 0.61
LDHC-206ENST00000539369 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
LDHC-206ENST00000539369 CACNB1Q02641 598 aaPredicted RBP18.25■□□□□ 0.51
LDHC-206ENST00000539369 PPP4R3CPQ6ZMV5 832 aa18.11■□□□□ 0.49
LDHC-206ENST00000539369 DCAF8L1A6NGE4 600 aa18.08■□□□□ 0.48
LDHC-206ENST00000539369 HOXD11P31277 338 aaPredicted RBP18.05■□□□□ 0.48
LDHC-206ENST00000539369 RNF39Q9H2S5 420 aa17.93■□□□□ 0.46
LDHC-206ENST00000539369 CNKSR2Q8WXI2 1034 aa17.83■□□□□ 0.44
LDHC-206ENST00000539369 RNF216Q9NWF9 866 aaPredicted RBP17.78■□□□□ 0.44
LDHC-206ENST00000539369 C1QBPQ07021 282 aaKnown RBP17.58■□□□□ 0.4
LDHC-206ENST00000539369 DNAJC5BQ9UF47 199 aa17.45■□□□□ 0.38
LDHC-206ENST00000539369 NCBP3Q53F19 620 aaKnown RBP17.19■□□□□ 0.34
LDHC-206ENST00000539369 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.13■□□□□ 0.33
LDHC-206ENST00000539369 NPM3O75607 178 aaKnown RBP17.07■□□□□ 0.32
LDHC-206ENST00000539369 U3KPZ7 1027 aaPredicted RBP16.82■□□□□ 0.28
LDHC-206ENST00000539369 SPINK5Q9NQ38 1064 aaPredicted RBP16.71■□□□□ 0.27
LDHC-206ENST00000539369 DSG3P32926 999 aa16.67■□□□□ 0.26
LDHC-206ENST00000539369 CAPN15O75808 1086 aa16.61■□□□□ 0.25
LDHC-206ENST00000539369 POTEHQ6S545 545 aa16.53■□□□□ 0.24
LDHC-206ENST00000539369 SLC4A2P04920 1241 aa16.45■□□□□ 0.22
LDHC-206ENST00000539369 KCNA4P22459 653 aa16.41■□□□□ 0.22
LDHC-206ENST00000539369 TRHP20396 242 aaPredicted RBP16.26■□□□□ 0.19
LDHC-206ENST00000539369 ABCB7O75027 752 aa16.24■□□□□ 0.19
LDHC-206ENST00000539369 ZNF219Q9P2Y4 722 aaPredicted RBP16.17■□□□□ 0.18
LDHC-206ENST00000539369 APLP2Q06481 763 aa16.12■□□□□ 0.17
LDHC-206ENST00000539369 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.05■□□□□ 0.16
LDHC-206ENST00000539369 HNRNPUL2Q1KMD3 747 aaKnown RBP16.05■□□□□ 0.16
LDHC-206ENST00000539369 SAMD1Q6SPF0 538 aaPredicted RBP15.98■□□□□ 0.15
LDHC-206ENST00000539369 RBM42Q9BTD8 480 aaKnown RBP15.81■□□□□ 0.12
LDHC-206ENST00000539369 POLA2Q14181 598 aa15.75■□□□□ 0.11
LDHC-206ENST00000539369 MYCNP04198 464 aaPredicted RBP15.73■□□□□ 0.11
LDHC-206ENST00000539369 CHRDL2Q6WN34 429 aa15.69■□□□□ 0.1
LDHC-206ENST00000539369 ATF5Q9Y2D1 282 aaPredicted RBP15.52■□□□□ 0.08
LDHC-206ENST00000539369 AKT1S1Q96B36 256 aa15.4■□□□□ 0.06
LDHC-206ENST00000539369 FOXD4L1Q9NU39 408 aa15.37■□□□□ 0.05
LDHC-206ENST00000539369 SLC4A1APQ9BWU0 796 aaKnown RBP15.35■□□□□ 0.05
LDHC-206ENST00000539369 SP7Q8TDD2 431 aaPredicted RBP15.31■□□□□ 0.04
LDHC-206ENST00000539369 ZBTB12Q9Y330 459 aaPredicted RBP15.31■□□□□ 0.04
LDHC-206ENST00000539369 REM2Q8IYK8 340 aaPredicted RBP15.3■□□□□ 0.04
LDHC-206ENST00000539369 OSCARQ8IYS5 282 aa15.29■□□□□ 0.04
LDHC-206ENST00000539369 PIP4P2Q8N4L2 257 aa15.26■□□□□ 0.03
LDHC-206ENST00000539369 PITPNM1O00562 1244 aa15.16■□□□□ 0.02
LDHC-206ENST00000539369 ZBTB22O15209 634 aa15.13■□□□□ 0.01
LDHC-206ENST00000539369 FXR2P51116 673 aaKnown RBP eCLIP15.1■□□□□ 0.01
LDHC-206ENST00000539369 HAX1O00165 279 aa15.03■□□□□ -0
LDHC-206ENST00000539369 EVX2Q03828 476 aa14.95□□□□□ -0.02
LDHC-206ENST00000539369 ATXN8OSP0DMR3 200 aa14.91□□□□□ -0.02
LDHC-206ENST00000539369 SPDYE2BA6NHP3 402 aa14.86□□□□□ -0.03
LDHC-206ENST00000539369 SPDYE6P0CI01 402 aa14.86□□□□□ -0.03
LDHC-206ENST00000539369 SPDYE2Q495Y8 402 aa14.86□□□□□ -0.03
LDHC-206ENST00000539369 FBLN2P98095 1184 aa14.78□□□□□ -0.04
LDHC-206ENST00000539369 MKRN4PQ13434 485 aaPredicted RBP14.78□□□□□ -0.04
LDHC-206ENST00000539369 PRKAR2AP13861 404 aaKnown RBP14.73□□□□□ -0.05
LDHC-206ENST00000539369 CLEC11AQ9Y240 323 aa14.69□□□□□ -0.06
LDHC-206ENST00000539369 SPDYE1Q8NFV5 336 aaPredicted RBP14.68□□□□□ -0.06
LDHC-206ENST00000539369 SSUH2Q9Y2M2 353 aa14.67□□□□□ -0.06
LDHC-206ENST00000539369 C19orf67A6NJJ6 358 aa14.63□□□□□ -0.07
LDHC-206ENST00000539369 ZNF692Q9BU19 519 aaPredicted RBP14.62□□□□□ -0.07
LDHC-206ENST00000539369 CHADLQ6NUI6 762 aa14.52□□□□□ -0.09
LDHC-206ENST00000539369 GABBR2O75899 941 aa14.51□□□□□ -0.09
LDHC-206ENST00000539369 PABPN1Q86U42 306 aaKnown RBP eCLIP14.42□□□□□ -0.1
LDHC-206ENST00000539369 PRR29P0C7W0 189 aa14.38□□□□□ -0.11
LDHC-206ENST00000539369 LHX8Q68G74 356 aa14.35□□□□□ -0.11
LDHC-206ENST00000539369 POTEIP0CG38 1075 aa14.27□□□□□ -0.13
LDHC-206ENST00000539369 CD44P16070 742 aaKnown RBP14.23□□□□□ -0.13
LDHC-206ENST00000539369 FARP1Q9Y4F1 1045 aaPredicted RBP14.23□□□□□ -0.13
LDHC-206ENST00000539369 CSRNP3Q8WYN3 585 aa14.04□□□□□ -0.16
LDHC-206ENST00000539369 CLCN6P51797 869 aa14.03□□□□□ -0.16
LDHC-206ENST00000539369 ZNF579Q8NAF0 562 aaKnown RBP14.01□□□□□ -0.17
LDHC-206ENST00000539369 CREBZFQ9NS37 354 aa14.01□□□□□ -0.17
LDHC-206ENST00000539369 ZRANB1Q9UGI0 708 aa13.97□□□□□ -0.17
LDHC-206ENST00000539369 DCBLD2Q96PD2 775 aa13.96□□□□□ -0.17
LDHC-206ENST00000539369 GALR2O43603 387 aaPredicted RBP13.9□□□□□ -0.18
LDHC-206ENST00000539369 STAG3Q9UJ98 1225 aa13.85□□□□□ -0.19
LDHC-206ENST00000539369 POTEB2H3BUK9 544 aa13.8□□□□□ -0.2
LDHC-206ENST00000539369 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
LDHC-206ENST00000539369 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
LDHC-206ENST00000539369 PHF12Q96QT6 1004 aa13.79□□□□□ -0.2
LDHC-206ENST00000539369 OTUD5Q96G74 571 aa13.78□□□□□ -0.2
LDHC-206ENST00000539369 MNX1P50219 401 aaPredicted RBP13.75□□□□□ -0.21
LDHC-206ENST00000539369 PLSCR2Q9NRY7 297 aa13.72□□□□□ -0.21
LDHC-206ENST00000539369 PELP1Q8IZL8 1130 aaKnown RBP13.71□□□□□ -0.21
LDHC-206ENST00000539369 PAK3O75914 559 aaPredicted RBP13.67□□□□□ -0.22
LDHC-206ENST00000539369 NPM1P06748 294 aaKnown RBP eCLIP13.61□□□□□ -0.23
LDHC-206ENST00000539369 MS4A3Q96HJ5 214 aa13.58□□□□□ -0.24
LDHC-206ENST00000539369 ASTLQ6HA08 431 aaPredicted RBP13.56□□□□□ -0.24
LDHC-206ENST00000539369 POTEJP0CG39 1038 aa13.55□□□□□ -0.24
LDHC-206ENST00000539369 POTEMA6NI47 508 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms