RNA–Protein interactions for RNA: ENST00000539019.1

SSPN-206, Transcript of sarcospan, humanhuman

TSL 1 (best)

Gene SSPN, Length 1,356 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSPN-206ENST00000539019 AEBP2Q6ZN18 517 aaPredicted RBP29.01■■■□□ 2.24
SSPN-206ENST00000539019 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.06
SSPN-206ENST00000539019 SENP3Q9H4L4 574 aaPredicted RBP24.63■■□□□ 1.53
SSPN-206ENST00000539019 PHF23Q9BUL5 403 aaPredicted RBP24.57■■□□□ 1.52
SSPN-206ENST00000539019 FOXD1Q16676 465 aa22.95■■□□□ 1.26
SSPN-206ENST00000539019 PLPPR3Q6T4P5 718 aa22.51■■□□□ 1.19
SSPN-206ENST00000539019 PPP6R1Q9UPN7 881 aa21.82■■□□□ 1.08
SSPN-206ENST00000539019 ADRA2BP18089 450 aa21.77■■□□□ 1.08
SSPN-206ENST00000539019 PIAS4Q8N2W9 510 aaPredicted RBP21.53■■□□□ 1.04
SSPN-206ENST00000539019 MSH5O43196 834 aa21.26■□□□□ 0.99
SSPN-206ENST00000539019 POTEDQ86YR6 584 aa20.07■□□□□ 0.8
SSPN-206ENST00000539019 MAPK8IP2Q13387 824 aaPredicted RBP19.88■□□□□ 0.77
SSPN-206ENST00000539019 SCAF1Q9H7N4 1312 aaKnown RBP19.87■□□□□ 0.77
SSPN-206ENST00000539019 PPP4R3CPQ6ZMV5 832 aa19.82■□□□□ 0.76
SSPN-206ENST00000539019 DMRT2Q9Y5R5 561 aa19.61■□□□□ 0.73
SSPN-206ENST00000539019 CNKSR2Q8WXI2 1034 aa19.32■□□□□ 0.68
SSPN-206ENST00000539019 NCBP3Q53F19 620 aaKnown RBP19.16■□□□□ 0.66
SSPN-206ENST00000539019 HOXD11P31277 338 aaPredicted RBP19.06■□□□□ 0.64
SSPN-206ENST00000539019 RNF216Q9NWF9 866 aaPredicted RBP19.04■□□□□ 0.64
SSPN-206ENST00000539019 KCNA4P22459 653 aa18.93■□□□□ 0.62
SSPN-206ENST00000539019 NPM3O75607 178 aaKnown RBP18.9■□□□□ 0.62
SSPN-206ENST00000539019 DCAF8L1A6NGE4 600 aa18.81■□□□□ 0.6
SSPN-206ENST00000539019 DNAJC5BQ9UF47 199 aa18.37■□□□□ 0.53
SSPN-206ENST00000539019 RNF39Q9H2S5 420 aa18.2■□□□□ 0.5
SSPN-206ENST00000539019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.5
SSPN-206ENST00000539019 CACNB1Q02641 598 aaPredicted RBP18.02■□□□□ 0.47
SSPN-206ENST00000539019 SLC4A2P04920 1241 aa17.95■□□□□ 0.46
SSPN-206ENST00000539019 C1QBPQ07021 282 aaKnown RBP17.95■□□□□ 0.46
SSPN-206ENST00000539019 SLC4A1APQ9BWU0 796 aaKnown RBP17.94■□□□□ 0.46
SSPN-206ENST00000539019 U3KPZ7 1027 aaPredicted RBP17.84■□□□□ 0.45
SSPN-206ENST00000539019 FOXD4L1Q9NU39 408 aa17.51■□□□□ 0.39
SSPN-206ENST00000539019 SPINK5Q9NQ38 1064 aaPredicted RBP17.47■□□□□ 0.39
SSPN-206ENST00000539019 MYCNP04198 464 aaPredicted RBP17.45■□□□□ 0.38
SSPN-206ENST00000539019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.44■□□□□ 0.38
SSPN-206ENST00000539019 HNRNPUL2Q1KMD3 747 aaKnown RBP17.44■□□□□ 0.38
SSPN-206ENST00000539019 ZBTB22O15209 634 aa17.42■□□□□ 0.38
SSPN-206ENST00000539019 CAPN15O75808 1086 aa17.4■□□□□ 0.38
SSPN-206ENST00000539019 SAMD1Q6SPF0 538 aaPredicted RBP17.38■□□□□ 0.37
SSPN-206ENST00000539019 APLP2Q06481 763 aa17.34■□□□□ 0.37
SSPN-206ENST00000539019 TRHP20396 242 aaPredicted RBP17.25■□□□□ 0.35
SSPN-206ENST00000539019 DSG3P32926 999 aa17.21■□□□□ 0.35
SSPN-206ENST00000539019 ZNF219Q9P2Y4 722 aaPredicted RBP17.18■□□□□ 0.34
SSPN-206ENST00000539019 ATF5Q9Y2D1 282 aaPredicted RBP17.07■□□□□ 0.32
SSPN-206ENST00000539019 ABCB7O75027 752 aa17.06■□□□□ 0.32
SSPN-206ENST00000539019 CSRNP3Q8WYN3 585 aa17.02■□□□□ 0.31
SSPN-206ENST00000539019 EHMT2Q96KQ7 1210 aa17.01■□□□□ 0.31
SSPN-206ENST00000539019 ATXN8OSP0DMR3 200 aa16.92■□□□□ 0.3
SSPN-206ENST00000539019 POLA2Q14181 598 aa16.89■□□□□ 0.29
SSPN-206ENST00000539019 ZBTB12Q9Y330 459 aaPredicted RBP16.51■□□□□ 0.23
SSPN-206ENST00000539019 RBM42Q9BTD8 480 aaKnown RBP16.37■□□□□ 0.21
SSPN-206ENST00000539019 FBLN2P98095 1184 aa16.32■□□□□ 0.2
SSPN-206ENST00000539019 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
SSPN-206ENST00000539019 MKRN4PQ13434 485 aaPredicted RBP16.29■□□□□ 0.2
SSPN-206ENST00000539019 AKT1S1Q96B36 256 aa16.11■□□□□ 0.17
SSPN-206ENST00000539019 SPDYE2BA6NHP3 402 aa16.06■□□□□ 0.16
SSPN-206ENST00000539019 SPDYE6P0CI01 402 aa16.06■□□□□ 0.16
SSPN-206ENST00000539019 SPDYE2Q495Y8 402 aa16.06■□□□□ 0.16
SSPN-206ENST00000539019 REM2Q8IYK8 340 aaPredicted RBP15.97■□□□□ 0.15
SSPN-206ENST00000539019 ZNF692Q9BU19 519 aaPredicted RBP15.97■□□□□ 0.15
SSPN-206ENST00000539019 SSUH2Q9Y2M2 353 aa15.9■□□□□ 0.14
SSPN-206ENST00000539019 CHRDL2Q6WN34 429 aa15.86■□□□□ 0.13
SSPN-206ENST00000539019 POTEHQ6S545 545 aa15.8■□□□□ 0.12
SSPN-206ENST00000539019 PITPNM1O00562 1244 aa15.78■□□□□ 0.12
SSPN-206ENST00000539019 PABPN1Q86U42 306 aaKnown RBP eCLIP15.75■□□□□ 0.11
SSPN-206ENST00000539019 SPDYE4A6NLX3 237 aa15.73■□□□□ 0.11
SSPN-206ENST00000539019 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
SSPN-206ENST00000539019 CLEC11AQ9Y240 323 aa15.66■□□□□ 0.1
SSPN-206ENST00000539019 PIP4P2Q8N4L2 257 aa15.6■□□□□ 0.09
SSPN-206ENST00000539019 FXR2P51116 673 aaKnown RBP eCLIP15.57■□□□□ 0.08
SSPN-206ENST00000539019 PRR29P0C7W0 189 aa15.46■□□□□ 0.07
SSPN-206ENST00000539019 PRKAR2AP13861 404 aaKnown RBP15.39■□□□□ 0.05
SSPN-206ENST00000539019 FKBP8Q14318 412 aa15.39■□□□□ 0.05
SSPN-206ENST00000539019 PROM2Q8N271 834 aa15.39■□□□□ 0.05
SSPN-206ENST00000539019 STAG3Q9UJ98 1225 aa15.37■□□□□ 0.05
SSPN-206ENST00000539019 CHADLQ6NUI6 762 aa15.33■□□□□ 0.04
SSPN-206ENST00000539019 HAX1O00165 279 aa15.2■□□□□ 0.02
SSPN-206ENST00000539019 CREBZFQ9NS37 354 aa15.18■□□□□ 0.02
SSPN-206ENST00000539019 FARP1Q9Y4F1 1045 aaPredicted RBP15.12■□□□□ 0.01
SSPN-206ENST00000539019 EVX2Q03828 476 aa15.08■□□□□ 0
SSPN-206ENST00000539019 C19orf67A6NJJ6 358 aa15.05■□□□□ -0
SSPN-206ENST00000539019 SP7Q8TDD2 431 aaPredicted RBP15□□□□□ -0.01
SSPN-206ENST00000539019 MNX1P50219 401 aaPredicted RBP14.98□□□□□ -0.01
SSPN-206ENST00000539019 MIER1Q8N108 512 aa14.97□□□□□ -0.01
SSPN-206ENST00000539019 CD44P16070 742 aaKnown RBP14.92□□□□□ -0.02
SSPN-206ENST00000539019 FBXO3Q9UK99 471 aa14.92□□□□□ -0.02
SSPN-206ENST00000539019 NPM1P06748 294 aaKnown RBP eCLIP14.89□□□□□ -0.03
SSPN-206ENST00000539019 PLCD3Q8N3E9 789 aa14.88□□□□□ -0.03
SSPN-206ENST00000539019 PLEKHG5O94827 1062 aa14.87□□□□□ -0.03
SSPN-206ENST00000539019 ZRANB1Q9UGI0 708 aa14.79□□□□□ -0.04
SSPN-206ENST00000539019 GABBR2O75899 941 aa14.74□□□□□ -0.05
SSPN-206ENST00000539019 VASPP50552 380 aaPredicted RBP14.73□□□□□ -0.05
SSPN-206ENST00000539019 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
SSPN-206ENST00000539019 ZBTB47Q9UFB7 747 aaPredicted RBP14.71□□□□□ -0.06
SSPN-206ENST00000539019 ZNF579Q8NAF0 562 aaKnown RBP14.7□□□□□ -0.06
SSPN-206ENST00000539019 TSPYL2Q9H2G4 693 aaPredicted RBP14.67□□□□□ -0.06
SSPN-206ENST00000539019 RASEFQ8IZ41 740 aa14.65□□□□□ -0.06
SSPN-206ENST00000539019 PHF12Q96QT6 1004 aa14.62□□□□□ -0.07
SSPN-206ENST00000539019 NUBP1P53384 320 aa14.61□□□□□ -0.07
SSPN-206ENST00000539019 CLCN6P51797 869 aa14.6□□□□□ -0.07
SSPN-206ENST00000539019 KLHL34Q8N239 644 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms