RNA–Protein interactions for RNA: ENST00000538647.1

SMCO2-204, Transcript of single-pass membrane protein with coiled-coil domains 2, humanhuman

TSL 5

Gene SMCO2, Length 287 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO2-204ENST00000538647 AEBP2Q6ZN18 517 aaPredicted RBP43.36■■■■■ 4.53
SMCO2-204ENST00000538647 CHIC1Q5VXU3 224 aa42.66■■■■■ 4.42
SMCO2-204ENST00000538647 PHF23Q9BUL5 403 aaPredicted RBP37.58■■■■□ 3.61
SMCO2-204ENST00000538647 SENP3Q9H4L4 574 aaPredicted RBP36.7■■■■□ 3.47
SMCO2-204ENST00000538647 PLPPR3Q6T4P5 718 aa34.79■■■■□ 3.16
SMCO2-204ENST00000538647 FOXD1Q16676 465 aa34.04■■■■□ 3.04
SMCO2-204ENST00000538647 ADRA2BP18089 450 aa33.05■■■□□ 2.88
SMCO2-204ENST00000538647 PPP6R1Q9UPN7 881 aa33.05■■■□□ 2.88
SMCO2-204ENST00000538647 PIAS4Q8N2W9 510 aaPredicted RBP32.2■■■□□ 2.75
SMCO2-204ENST00000538647 MSH5O43196 834 aa31.22■■■□□ 2.59
SMCO2-204ENST00000538647 PPP4R3CPQ6ZMV5 832 aa30.72■■■□□ 2.51
SMCO2-204ENST00000538647 KCNA4P22459 653 aa30.43■■■□□ 2.46
SMCO2-204ENST00000538647 SCAF1Q9H7N4 1312 aaKnown RBP30.18■■■□□ 2.42
SMCO2-204ENST00000538647 NCBP3Q53F19 620 aaKnown RBP29.99■■■□□ 2.39
SMCO2-204ENST00000538647 MAPK8IP2Q13387 824 aaPredicted RBP29.89■■■□□ 2.38
SMCO2-204ENST00000538647 CNKSR2Q8WXI2 1034 aa29.76■■■□□ 2.35
SMCO2-204ENST00000538647 NPM3O75607 178 aaKnown RBP29.58■■■□□ 2.33
SMCO2-204ENST00000538647 DMRT2Q9Y5R5 561 aa29.36■■■□□ 2.29
SMCO2-204ENST00000538647 RNF216Q9NWF9 866 aaPredicted RBP29.09■■■□□ 2.25
SMCO2-204ENST00000538647 SLC4A1APQ9BWU0 796 aaKnown RBP29.03■■■□□ 2.24
SMCO2-204ENST00000538647 HOXD11P31277 338 aaPredicted RBP28.88■■■□□ 2.21
SMCO2-204ENST00000538647 EHMT2Q96KQ7 1210 aa28.65■■■□□ 2.18
SMCO2-204ENST00000538647 DNAJC5BQ9UF47 199 aa28.6■■■□□ 2.17
SMCO2-204ENST00000538647 DCAF8L1A6NGE4 600 aa28.12■■■□□ 2.09
SMCO2-204ENST00000538647 CSRNP3Q8WYN3 585 aa28.12■■■□□ 2.09
SMCO2-204ENST00000538647 ZBTB22O15209 634 aa28.03■■■□□ 2.08
SMCO2-204ENST00000538647 FOXD4L1Q9NU39 408 aa27.88■■■□□ 2.05
SMCO2-204ENST00000538647 SLC4A2P04920 1241 aa27.85■■■□□ 2.05
SMCO2-204ENST00000538647 POTEDQ86YR6 584 aa27.85■■■□□ 2.05
SMCO2-204ENST00000538647 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.55■■■□□ 2
SMCO2-204ENST00000538647 MYCNP04198 464 aaPredicted RBP27.31■■□□□ 1.96
SMCO2-204ENST00000538647 U3KPZ7 1027 aaPredicted RBP27.15■■□□□ 1.94
SMCO2-204ENST00000538647 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.88■■□□□ 1.89
SMCO2-204ENST00000538647 HNRNPUL2Q1KMD3 747 aaKnown RBP26.88■■□□□ 1.89
SMCO2-204ENST00000538647 ATXN8OSP0DMR3 200 aa26.84■■□□□ 1.89
SMCO2-204ENST00000538647 SAMD1Q6SPF0 538 aaPredicted RBP26.82■■□□□ 1.88
SMCO2-204ENST00000538647 RNF39Q9H2S5 420 aa26.81■■□□□ 1.88
SMCO2-204ENST00000538647 ATF5Q9Y2D1 282 aaPredicted RBP26.6■■□□□ 1.85
SMCO2-204ENST00000538647 APLP2Q06481 763 aa26.51■■□□□ 1.83
SMCO2-204ENST00000538647 C1QBPQ07021 282 aaKnown RBP26.49■■□□□ 1.83
SMCO2-204ENST00000538647 SPINK5Q9NQ38 1064 aaPredicted RBP26.3■■□□□ 1.8
SMCO2-204ENST00000538647 CAPN15O75808 1086 aa26.17■■□□□ 1.78
SMCO2-204ENST00000538647 TRHP20396 242 aaPredicted RBP26.15■■□□□ 1.78
SMCO2-204ENST00000538647 ZNF219Q9P2Y4 722 aaPredicted RBP26.13■■□□□ 1.77
SMCO2-204ENST00000538647 CACNB1Q02641 598 aaPredicted RBP25.87■■□□□ 1.73
SMCO2-204ENST00000538647 POLA2Q14181 598 aa25.79■■□□□ 1.72
SMCO2-204ENST00000538647 ABCB7O75027 752 aa25.73■■□□□ 1.71
SMCO2-204ENST00000538647 DSG3P32926 999 aa25.63■■□□□ 1.69
SMCO2-204ENST00000538647 MKRN4PQ13434 485 aaPredicted RBP25.45■■□□□ 1.66
SMCO2-204ENST00000538647 FBLN2P98095 1184 aa25.42■■□□□ 1.66
SMCO2-204ENST00000538647 FKBP8Q14318 412 aa25.42■■□□□ 1.66
SMCO2-204ENST00000538647 ZBTB12Q9Y330 459 aaPredicted RBP25.35■■□□□ 1.65
SMCO2-204ENST00000538647 SPDYE4A6NLX3 237 aa25.04■■□□□ 1.6
SMCO2-204ENST00000538647 OSCARQ8IYS5 282 aa24.92■■□□□ 1.58
SMCO2-204ENST00000538647 SPDYE2BA6NHP3 402 aa24.7■■□□□ 1.54
SMCO2-204ENST00000538647 SPDYE6P0CI01 402 aa24.7■■□□□ 1.54
SMCO2-204ENST00000538647 SPDYE2Q495Y8 402 aa24.7■■□□□ 1.54
SMCO2-204ENST00000538647 ZNF692Q9BU19 519 aaPredicted RBP24.69■■□□□ 1.54
SMCO2-204ENST00000538647 PROM2Q8N271 834 aa24.65■■□□□ 1.54
SMCO2-204ENST00000538647 SSUH2Q9Y2M2 353 aa24.57■■□□□ 1.52
SMCO2-204ENST00000538647 RBM42Q9BTD8 480 aaKnown RBP24.39■■□□□ 1.49
SMCO2-204ENST00000538647 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
SMCO2-204ENST00000538647 FBXO3Q9UK99 471 aa24.37■■□□□ 1.49
SMCO2-204ENST00000538647 AKT1S1Q96B36 256 aa24.17■■□□□ 1.46
SMCO2-204ENST00000538647 VASPP50552 380 aaPredicted RBP24.06■■□□□ 1.44
SMCO2-204ENST00000538647 STAG3Q9UJ98 1225 aa24■■□□□ 1.43
SMCO2-204ENST00000538647 REM2Q8IYK8 340 aaPredicted RBP23.97■■□□□ 1.43
SMCO2-204ENST00000538647 SPDYE1Q8NFV5 336 aaPredicted RBP23.9■■□□□ 1.42
SMCO2-204ENST00000538647 CLEC11AQ9Y240 323 aa23.81■■□□□ 1.4
SMCO2-204ENST00000538647 IFNLR1Q8IU57 520 aaPredicted RBP23.77■■□□□ 1.4
SMCO2-204ENST00000538647 AMER1Q5JTC6 1135 aaPredicted RBP23.74■■□□□ 1.39
SMCO2-204ENST00000538647 RTN4Q9NQC3 1192 aaKnown RBP23.73■■□□□ 1.39
SMCO2-204ENST00000538647 PLCD3Q8N3E9 789 aa23.72■■□□□ 1.39
SMCO2-204ENST00000538647 MIER1Q8N108 512 aa23.71■■□□□ 1.39
SMCO2-204ENST00000538647 PITPNM1O00562 1244 aa23.7■■□□□ 1.38
SMCO2-204ENST00000538647 PRR29P0C7W0 189 aa23.62■■□□□ 1.37
SMCO2-204ENST00000538647 KLHL34Q8N239 644 aa23.58■■□□□ 1.37
SMCO2-204ENST00000538647 PLEKHG5O94827 1062 aa23.53■■□□□ 1.36
SMCO2-204ENST00000538647 SPOCK2Q92563 424 aa23.41■■□□□ 1.34
SMCO2-204ENST00000538647 CREBZFQ9NS37 354 aa23.41■■□□□ 1.34
SMCO2-204ENST00000538647 ZBTB47Q9UFB7 747 aaPredicted RBP23.39■■□□□ 1.33
SMCO2-204ENST00000538647 CHRDL2Q6WN34 429 aa23.27■■□□□ 1.32
SMCO2-204ENST00000538647 MNX1P50219 401 aaPredicted RBP23.21■■□□□ 1.31
SMCO2-204ENST00000538647 CHADLQ6NUI6 762 aa23.21■■□□□ 1.31
SMCO2-204ENST00000538647 FXR2P51116 673 aaKnown RBP eCLIP23.16■■□□□ 1.3
SMCO2-204ENST00000538647 PRKAR2AP13861 404 aaKnown RBP23.11■■□□□ 1.29
SMCO2-204ENST00000538647 PKD2Q13563 968 aa23.11■■□□□ 1.29
SMCO2-204ENST00000538647 NUBP1P53384 320 aa23.06■■□□□ 1.28
SMCO2-204ENST00000538647 PIP4P2Q8N4L2 257 aa23.06■■□□□ 1.28
SMCO2-204ENST00000538647 CIZ1Q9ULV3 898 aaPredicted RBP23.01■■□□□ 1.27
SMCO2-204ENST00000538647 NPM1P06748 294 aaKnown RBP eCLIP23■■□□□ 1.27
SMCO2-204ENST00000538647 FARP1Q9Y4F1 1045 aaPredicted RBP22.99■■□□□ 1.27
SMCO2-204ENST00000538647 ECM2O94769 699 aaPredicted RBP22.9■■□□□ 1.26
SMCO2-204ENST00000538647 RASEFQ8IZ41 740 aa22.9■■□□□ 1.26
SMCO2-204ENST00000538647 GSE1Q14687 1217 aa22.88■■□□□ 1.25
SMCO2-204ENST00000538647 DCAF8Q5TAQ9 597 aa22.87■■□□□ 1.25
SMCO2-204ENST00000538647 FAM212AQ96EL1 285 aa22.87■■□□□ 1.25
SMCO2-204ENST00000538647 TRIM41Q8WV44 630 aa22.74■■□□□ 1.23
SMCO2-204ENST00000538647 DCAF8L2P0C7V8 631 aa22.72■■□□□ 1.23
SMCO2-204ENST00000538647 TSPYL2Q9H2G4 693 aaPredicted RBP22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms