RNA–Protein interactions for RNA: ENST00000537585.1

SRGAP1-203, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 3

Gene SRGAP1, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-203ENST00000537585 AEBP2Q6ZN18 517 aaPredicted RBP28.96■■■□□ 2.23
SRGAP1-203ENST00000537585 CHIC1Q5VXU3 224 aa27.62■■■□□ 2.01
SRGAP1-203ENST00000537585 SENP3Q9H4L4 574 aaPredicted RBP24.4■■□□□ 1.5
SRGAP1-203ENST00000537585 PHF23Q9BUL5 403 aaPredicted RBP24.38■■□□□ 1.49
SRGAP1-203ENST00000537585 FOXD1Q16676 465 aa22.87■■□□□ 1.25
SRGAP1-203ENST00000537585 PLPPR3Q6T4P5 718 aa22.11■■□□□ 1.13
SRGAP1-203ENST00000537585 PPP6R1Q9UPN7 881 aa21.7■■□□□ 1.06
SRGAP1-203ENST00000537585 ADRA2BP18089 450 aa21.62■■□□□ 1.05
SRGAP1-203ENST00000537585 PIAS4Q8N2W9 510 aaPredicted RBP21.38■■□□□ 1.01
SRGAP1-203ENST00000537585 MSH5O43196 834 aa21.08■□□□□ 0.97
SRGAP1-203ENST00000537585 POTEDQ86YR6 584 aa20.26■□□□□ 0.83
SRGAP1-203ENST00000537585 MAPK8IP2Q13387 824 aaPredicted RBP19.8■□□□□ 0.76
SRGAP1-203ENST00000537585 PPP4R3CPQ6ZMV5 832 aa19.51■□□□□ 0.71
SRGAP1-203ENST00000537585 DMRT2Q9Y5R5 561 aa19.46■□□□□ 0.71
SRGAP1-203ENST00000537585 SCAF1Q9H7N4 1312 aaKnown RBP19.45■□□□□ 0.7
SRGAP1-203ENST00000537585 CNKSR2Q8WXI2 1034 aa18.98■□□□□ 0.63
SRGAP1-203ENST00000537585 HOXD11P31277 338 aaPredicted RBP18.84■□□□□ 0.61
SRGAP1-203ENST00000537585 RNF216Q9NWF9 866 aaPredicted RBP18.74■□□□□ 0.59
SRGAP1-203ENST00000537585 NCBP3Q53F19 620 aaKnown RBP18.67■□□□□ 0.58
SRGAP1-203ENST00000537585 DCAF8L1A6NGE4 600 aa18.66■□□□□ 0.58
SRGAP1-203ENST00000537585 NPM3O75607 178 aaKnown RBP18.63■□□□□ 0.57
SRGAP1-203ENST00000537585 KCNA4P22459 653 aa18.6■□□□□ 0.57
SRGAP1-203ENST00000537585 RNF39Q9H2S5 420 aa18.13■□□□□ 0.49
SRGAP1-203ENST00000537585 CACNB1Q02641 598 aaPredicted RBP17.98■□□□□ 0.47
SRGAP1-203ENST00000537585 DNAJC5BQ9UF47 199 aa17.97■□□□□ 0.47
SRGAP1-203ENST00000537585 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.93■□□□□ 0.46
SRGAP1-203ENST00000537585 C1QBPQ07021 282 aaKnown RBP17.77■□□□□ 0.44
SRGAP1-203ENST00000537585 SLC4A2P04920 1241 aa17.76■□□□□ 0.43
SRGAP1-203ENST00000537585 U3KPZ7 1027 aaPredicted RBP17.7■□□□□ 0.42
SRGAP1-203ENST00000537585 SLC4A1APQ9BWU0 796 aaKnown RBP17.5■□□□□ 0.39
SRGAP1-203ENST00000537585 SPINK5Q9NQ38 1064 aaPredicted RBP17.41■□□□□ 0.38
SRGAP1-203ENST00000537585 CAPN15O75808 1086 aa17.23■□□□□ 0.35
SRGAP1-203ENST00000537585 ZBTB22O15209 634 aa17.2■□□□□ 0.34
SRGAP1-203ENST00000537585 FOXD4L1Q9NU39 408 aa17.12■□□□□ 0.33
SRGAP1-203ENST00000537585 MYCNP04198 464 aaPredicted RBP17.1■□□□□ 0.33
SRGAP1-203ENST00000537585 DSG3P32926 999 aa17.1■□□□□ 0.33
SRGAP1-203ENST00000537585 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
SRGAP1-203ENST00000537585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.32
SRGAP1-203ENST00000537585 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
SRGAP1-203ENST00000537585 SAMD1Q6SPF0 538 aaPredicted RBP17.02■□□□□ 0.32
SRGAP1-203ENST00000537585 ABCB7O75027 752 aa16.98■□□□□ 0.31
SRGAP1-203ENST00000537585 ATF5Q9Y2D1 282 aaPredicted RBP16.92■□□□□ 0.3
SRGAP1-203ENST00000537585 APLP2Q06481 763 aa16.9■□□□□ 0.3
SRGAP1-203ENST00000537585 ZNF219Q9P2Y4 722 aaPredicted RBP16.9■□□□□ 0.3
SRGAP1-203ENST00000537585 POLA2Q14181 598 aa16.66■□□□□ 0.26
SRGAP1-203ENST00000537585 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
SRGAP1-203ENST00000537585 EHMT2Q96KQ7 1210 aa16.56■□□□□ 0.24
SRGAP1-203ENST00000537585 ATXN8OSP0DMR3 200 aa16.45■□□□□ 0.22
SRGAP1-203ENST00000537585 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
SRGAP1-203ENST00000537585 ZBTB12Q9Y330 459 aaPredicted RBP16.16■□□□□ 0.18
SRGAP1-203ENST00000537585 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
SRGAP1-203ENST00000537585 RBM42Q9BTD8 480 aaKnown RBP16.12■□□□□ 0.17
SRGAP1-203ENST00000537585 FBLN2P98095 1184 aa15.95■□□□□ 0.14
SRGAP1-203ENST00000537585 POTEHQ6S545 545 aa15.88■□□□□ 0.13
SRGAP1-203ENST00000537585 AKT1S1Q96B36 256 aa15.88■□□□□ 0.13
SRGAP1-203ENST00000537585 REM2Q8IYK8 340 aaPredicted RBP15.83■□□□□ 0.12
SRGAP1-203ENST00000537585 CHRDL2Q6WN34 429 aa15.79■□□□□ 0.12
SRGAP1-203ENST00000537585 SPDYE2BA6NHP3 402 aa15.76■□□□□ 0.11
SRGAP1-203ENST00000537585 SPDYE6P0CI01 402 aa15.76■□□□□ 0.11
SRGAP1-203ENST00000537585 SPDYE2Q495Y8 402 aa15.76■□□□□ 0.11
SRGAP1-203ENST00000537585 PITPNM1O00562 1244 aa15.71■□□□□ 0.11
SRGAP1-203ENST00000537585 SSUH2Q9Y2M2 353 aa15.68■□□□□ 0.1
SRGAP1-203ENST00000537585 ZNF692Q9BU19 519 aaPredicted RBP15.67■□□□□ 0.1
SRGAP1-203ENST00000537585 PIP4P2Q8N4L2 257 aa15.54■□□□□ 0.08
SRGAP1-203ENST00000537585 PABPN1Q86U42 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
SRGAP1-203ENST00000537585 CLEC11AQ9Y240 323 aa15.46■□□□□ 0.07
SRGAP1-203ENST00000537585 FXR2P51116 673 aaKnown RBP eCLIP15.45■□□□□ 0.06
SRGAP1-203ENST00000537585 SPDYE1Q8NFV5 336 aaPredicted RBP15.41■□□□□ 0.06
SRGAP1-203ENST00000537585 SPDYE4A6NLX3 237 aa15.38■□□□□ 0.05
SRGAP1-203ENST00000537585 PRKAR2AP13861 404 aaKnown RBP15.26■□□□□ 0.03
SRGAP1-203ENST00000537585 CHADLQ6NUI6 762 aa15.25■□□□□ 0.03
SRGAP1-203ENST00000537585 PRR29P0C7W0 189 aa15.18■□□□□ 0.02
SRGAP1-203ENST00000537585 EVX2Q03828 476 aa15.14■□□□□ 0.01
SRGAP1-203ENST00000537585 HAX1O00165 279 aa15.1■□□□□ 0.01
SRGAP1-203ENST00000537585 PROM2Q8N271 834 aa15.08■□□□□ 0
SRGAP1-203ENST00000537585 SP7Q8TDD2 431 aaPredicted RBP15.01□□□□□ -0.01
SRGAP1-203ENST00000537585 CREBZFQ9NS37 354 aa15□□□□□ -0.01
SRGAP1-203ENST00000537585 FKBP8Q14318 412 aa14.98□□□□□ -0.01
SRGAP1-203ENST00000537585 C19orf67A6NJJ6 358 aa14.94□□□□□ -0.02
SRGAP1-203ENST00000537585 STAG3Q9UJ98 1225 aa14.94□□□□□ -0.02
SRGAP1-203ENST00000537585 FARP1Q9Y4F1 1045 aaPredicted RBP14.94□□□□□ -0.02
SRGAP1-203ENST00000537585 MNX1P50219 401 aaPredicted RBP14.81□□□□□ -0.04
SRGAP1-203ENST00000537585 CD44P16070 742 aaKnown RBP14.78□□□□□ -0.04
SRGAP1-203ENST00000537585 GABBR2O75899 941 aa14.67□□□□□ -0.06
SRGAP1-203ENST00000537585 ZRANB1Q9UGI0 708 aa14.62□□□□□ -0.07
SRGAP1-203ENST00000537585 MIER1Q8N108 512 aa14.59□□□□□ -0.07
SRGAP1-203ENST00000537585 PHF12Q96QT6 1004 aa14.55□□□□□ -0.08
SRGAP1-203ENST00000537585 ZNF579Q8NAF0 562 aaKnown RBP14.54□□□□□ -0.08
SRGAP1-203ENST00000537585 NPM1P06748 294 aaKnown RBP eCLIP14.52□□□□□ -0.09
SRGAP1-203ENST00000537585 PLCD3Q8N3E9 789 aa14.5□□□□□ -0.09
SRGAP1-203ENST00000537585 POTEIP0CG38 1075 aa14.47□□□□□ -0.09
SRGAP1-203ENST00000537585 RASEFQ8IZ41 740 aa14.47□□□□□ -0.09
SRGAP1-203ENST00000537585 GALR2O43603 387 aaPredicted RBP14.46□□□□□ -0.09
SRGAP1-203ENST00000537585 TSPYL2Q9H2G4 693 aaPredicted RBP14.46□□□□□ -0.09
SRGAP1-203ENST00000537585 PAK3O75914 559 aaPredicted RBP14.4□□□□□ -0.1
SRGAP1-203ENST00000537585 PLEKHG5O94827 1062 aa14.38□□□□□ -0.11
SRGAP1-203ENST00000537585 CCDC61Q9Y6R9 512 aa14.37□□□□□ -0.11
SRGAP1-203ENST00000537585 VASPP50552 380 aaPredicted RBP14.36□□□□□ -0.11
SRGAP1-203ENST00000537585 NUBP1P53384 320 aa14.36□□□□□ -0.11
SRGAP1-203ENST00000537585 FBXO3Q9UK99 471 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms